mRNA_H-elongata_contig18085.4827.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18085.4827.1
Unique NamemRNA_H-elongata_contig18085.4827.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig18085.4827.1 vs. uniprot
Match: A0A6H5JD35_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD35_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.290e-13
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:   10 GTAERESKFQMMKRQAAAADPAG-GSGSFFAFHGSKAENWHGILREGLKNMSGA 168
            GTAERE++FQ +KR+AA     G G+GSF+AFHGS   NWHGIL+EGLKNMSG+
Sbjct:  731 GTAEREARFQALKREAALLSRGGTGTGSFYAFHGSGPGNWHGILQEGLKNMSGS 784
[Close]
BLAST of mRNA_H-elongata_contig18085.4827.1 vs. uniprot
Match: D7FUS3_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS3_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 3.300e-13
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   10 GTAERESKFQMMKRQAAAADPAG-GSGSFFAFHGSKAENWHGILREGLKNMSG 165
            GTAERE+KFQ MKR A +    G G+GSF+AFHGSK +NWHGIL  GL+NMSG
Sbjct:  777 GTAEREAKFQTMKRIAGSRRSGGSGTGSFYAFHGSKPDNWHGILHMGLRNMSG 829
[Close]
BLAST of mRNA_H-elongata_contig18085.4827.1 vs. uniprot
Match: D8LFE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE1_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 7.730e-13
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:   10 GTAERESKFQMMKRQAAAADPAGGSGSFFAFHGSKAENWHGILREGLKNMSG 165
            GTAERE+ FQ MKR+AA+    G +GSFFAFHGSK +NWH IL+ GLKNMSG
Sbjct:  321 GTAEREANFQRMKREAAS---NGRTGSFFAFHGSKPDNWHAILQLGLKNMSG 369
[Close]
BLAST of mRNA_H-elongata_contig18085.4827.1 vs. uniprot
Match: D7G899_ECTSI (UBA/TS-N domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G899_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 8.410e-13
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:   10 GTAERESKFQMMKRQAAAADPAG-GSGSFFAFHGSKAENWHGILREGLKNMSGA 168
            GTAERE++FQ++KR+AA       G+GSF+AFHGS   NWHGIL+EGLKNMSG+
Sbjct:  664 GTAEREARFQVLKREAALLSGGETGTGSFYAFHGSGPGNWHGILQEGLKNMSGS 717
[Close]
BLAST of mRNA_H-elongata_contig18085.4827.1 vs. uniprot
Match: D7G896_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G896_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.150e-12
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   13 TAERESKFQMMKRQAAAADPAGGSGSFFAFHGSKAENWHGILREGLKNMSG 165
            T+ERE +FQ MKR+AAA+  + G+GSFFAFHGS   NWHGILR G+KNMSG
Sbjct:  644 TSEREERFQAMKREAAAS--SNGTGSFFAFHGSAPGNWHGILRLGIKNMSG 692
[Close]
BLAST of mRNA_H-elongata_contig18085.4827.1 vs. uniprot
Match: A0A6H5JCJ2_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ2_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.570e-12
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:   13 TAERESKFQMMKRQAAAADPAGGSGSFFAFHGSKAENWHGILREGLKNMSGA 168
            T+ERE +FQ MKR+AAA+    G+GSFFAFHGS   NWHGILR G+KNMSG+
Sbjct:  222 TSEREERFQAMKREAAAS--LNGTGSFFAFHGSAPGNWHGILRLGIKNMSGS 271
[Close]
BLAST of mRNA_H-elongata_contig18085.4827.1 vs. uniprot
Match: A0A6H5JHW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW3_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.140e-12
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:   10 GTAERESKFQMMKRQAAAADPAGGSGSFFAFHGSKAENWHGILREGLKNMSG 165
            GTAERE+ FQ MK++AA+    G +GSFFAFHGSK +NWH IL+ GLKNMSG
Sbjct:  555 GTAEREANFQRMKKEAAS---NGRTGSFFAFHGSKPDNWHAILQLGLKNMSG 603
[Close]
BLAST of mRNA_H-elongata_contig18085.4827.1 vs. uniprot
Match: D7FUS7_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS7_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.600e-11
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   13 TAERESKFQMMKRQAAAADPAGGSGSFFAFHGSKAENWHGILREGLKNMSGA 168
            T+ RE  FQ MKR+AAA+  + G+GSFFAFHGS   NWHGILR G+KNMSG+
Sbjct:  332 TSAREECFQAMKREAAAS--SNGTGSFFAFHGSAPGNWHGILRLGIKNMSGS 381
[Close]
BLAST of mRNA_H-elongata_contig18085.4827.1 vs. uniprot
Match: A0A6H5JA28_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA28_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 3.570e-11
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   13 TAERESKFQMMKRQAAAADPAGGSGSFFAFHGSKAENWHGILREGLKNMSGA 168
            T+ RE +FQ MKR+AAA+  + G+GS FAFHGS   NWHGILR G+KNMSG+
Sbjct:  695 TSAREERFQAMKREAAAS--SNGTGSLFAFHGSAPGNWHGILRLGIKNMSGS 744
[Close]
BLAST of mRNA_H-elongata_contig18085.4827.1 vs. uniprot
Match: A0A6H5JN35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN35_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.710e-10
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   10 GTAERESKFQMMKRQAAAADPAG-GSGSFFAFHGSKAENWHGILREGLKNMS 162
            GTAERE+ FQ MKR A +    G G+GSF+AFHGSK ++WHGIL  GL+N+S
Sbjct:    5 GTAEREATFQTMKRIAGSRRSGGSGTGSFYAFHGSKPDSWHGILHVGLRNVS 56
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18085.4827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5JD35_9PHAE1.290e-1366.67PARP catalytic domain-containing protein n=1 Tax=E... [more]
D7FUS3_ECTSI3.300e-1367.92PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LFE1_ECTSI7.730e-1369.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G899_ECTSI8.410e-1364.81UBA/TS-N domain containing protein n=1 Tax=Ectocar... [more]
D7G896_ECTSI1.150e-1268.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCJ2_9PHAE1.570e-1267.31PARP catalytic domain-containing protein n=1 Tax=E... [more]
A0A6H5JHW3_9PHAE2.140e-1267.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUS7_ECTSI2.600e-1165.38PARP catalytic domain-containing protein n=1 Tax=E... [more]
A0A6H5JA28_9PHAE3.570e-1163.46PARP catalytic domain-containing protein n=1 Tax=E... [more]
A0A6H5JN35_9PHAE1.710e-1061.54Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18085contigH-elongata_contig18085:7131..7298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue5.8e-11
Seed eggNOG ortholog2880.D7FUS3
Preferred namePARP8
KEGG koko:K15258
GOsGO:0005575,GO:0005622,GO:0005623,GO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0022008,GO:0022603,GO:0022604,GO:0030154,GO:0031344,GO:0031346,GO:0032501,GO:0032502,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0120035,GO:1900006,GO:2000026
EggNOG free text desc.NAD ADP-ribosyltransferase activity
EggNOG OGs28HD2@1,2QPRC@2759
EC2.4.2.30
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930043.1802633-CDS-H-elongata_contig18085:7130..72981622930043.1802633-CDS-H-elongata_contig18085:7130..7298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18085 7131..7298 +
1691679258.751478-CDS-H-elongata_contig18085:7130..72981691679258.751478-CDS-H-elongata_contig18085:7130..7298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18085 7131..7298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18085.4827.1prot_H-elongata_contig18085.4827.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18085 7131..7298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18085.4827.1

>prot_H-elongata_contig18085.4827.1 ID=prot_H-elongata_contig18085.4827.1|Name=mRNA_H-elongata_contig18085.4827.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
LPPGTAERESKFQMMKRQAAAADPAGGSGSFFAFHGSKAENWHGILREGL
KNMSGA
back to top

mRNA from alignment at H-elongata_contig18085:7131..7298+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18085.4827.1 ID=mRNA_H-elongata_contig18085.4827.1|Name=mRNA_H-elongata_contig18085.4827.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig18085:7131..7298+ (Himanthalia elongata Himel1 dioecious)
TTACCGCCAGGCACTGCCGAGCGAGAATCAAAATTCCAGATGATGAAGAG
GCAAGCCGCGGCGGCGGACCCTGCTGGAGGAAGCGGCTCGTTTTTCGCGT
TCCATGGCAGCAAGGCAGAGAACTGGCACGGGATCCTGCGGGAGGGTCTG
AAGAACATGTCCGGTGCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig18085:7131..7298+

>mRNA_H-elongata_contig18085.4827.1 ID=mRNA_H-elongata_contig18085.4827.1|Name=mRNA_H-elongata_contig18085.4827.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig18085:7131..7298+ (Himanthalia elongata Himel1 dioecious)
TTACCGCCAGGCACTGCCGAGCGAGAATCAAAATTCCAGATGATGAAGAG
GCAAGCCGCGGCGGCGGACCCTGCTGGAGGAAGCGGCTCGTTTTTCGCGT
TCCATGGCAGCAAGGCAGAGAACTGGCACGGGATCCTGCGGGAGGGTCTG
AAGAACATGTCCGGTGCGTTACCGCCAGGCACTGCCGAGCGAGAATCAAA
ATTCCAGATGATGAAGAGGCAAGCCGCGGCGGCGGACCCTGCTGGAGGAA
GCGGCTCGTTTTTCGCGTTCCATGGCAGCAAGGCAGAGAACTGGCACGGG
ATCCTGCGGGAGGGTCTGAAGAACATGTCCGGTGCG
back to top