mRNA_H-elongata_contig180785.4823.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig180785.4823.1 vs. uniprot
Match: D8LUC7_ECTSI (Alb3 homolog, thylakoidal inner membrane insertase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC7_ECTSI) HSP 1 Score: 204 bits (518), Expect = 1.680e-61 Identity = 98/135 (72.59%), Postives = 115/135 (85.19%), Query Frame = 1
Query: 1 RSLLNLAKEDKLTESFLWIPSLEGPTFNSPPTEMMNWIKEWTDGVPKLGWHDTLAYLTIPVILVLTQAVSMKIMQPVKDPNAPWTNRSKLLKMRAQRACHNTTVLKFLPLLIGWFSLSVPSALGLYWILNNFIST 405
RSLLNLAKE+KLTESFLWIPSLEGPTF+SPPTEMM+WIK+W+DG PKLGWHDT+AY+TIP+ILV+TQ++S +IMQP KDP+ P +Q A N ++KFLPL+IGWFSLSVPSALGLYWILNNFIST
Sbjct: 220 RSLLNLAKENKLTESFLWIPSLEGPTFDSPPTEMMSWIKDWSDGAPKLGWHDTIAYMTIPIILVITQSISTRIMQPAKDPSQPVDE--------SQAASQN--IVKFLPLMIGWFSLSVPSALGLYWILNNFIST 344
BLAST of mRNA_H-elongata_contig180785.4823.1 vs. uniprot
Match: A0A835YLS0_9STRA (Alb3-like protein, thylakoidal inner membrane insertase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS0_9STRA) HSP 1 Score: 168 bits (425), Expect = 7.070e-48 Identity = 80/135 (59.26%), Postives = 99/135 (73.33%), Query Frame = 1
Query: 1 RSLLNLAKEDKLTESFLWIPSLEGPTFNSPPTEMMNWIKEWTDGVPKLGWHDTLAYLTIPVILVLTQAVSMKIMQPVKDPNAPWTNRSKLLKMRAQRACHNTTVLKFLPLLIGWFSLSVPSALGLYWILNNFIST 405
R+LLNLAKE+KL E FLW+PSLEGP F +PPTE +NWIK W +GVP LGWHDTL YL+IPVILV+TQ++S +++ P K A A + +LK+LPLLIGWFSL+VPS LGLYWI+NN +ST
Sbjct: 209 RALLNLAKENKLDEGFLWLPSLEGPVFGAPPTESLNWIKTWENGVPALGWHDTLCYLSIPVILVITQSISQQLISPPKKEGA--------------EADTSQAILKYLPLLIGWFSLNVPSGLGLYWIVNNIVST 329
BLAST of mRNA_H-elongata_contig180785.4823.1 vs. uniprot
Match: A0A7S1FKR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FKR9_9STRA) HSP 1 Score: 148 bits (374), Expect = 2.330e-40 Identity = 73/136 (53.68%), Postives = 95/136 (69.85%), Query Frame = 1
Query: 1 RSLLNLAKEDKLTESFLWIPSLEGPTFNSPPTEMMNWI-KEWTDGVPKLGWHDTLAYLTIPVILVLTQAVSMKIMQPVKDPNAPWTNRSKLLKMRAQRACHNTTVLKFLPLLIGWFSLSVPSALGLYWILNNFIST 405
R++L+LAKEDKL + FLW+P+LEGPT+ + P +WI K W DG P LGW DT+A+L+IP+IL++ QAVS ++MQP K+P+ P N VLK LPLLIGWFSL+VPSALG+YWI N +ST
Sbjct: 246 RAVLDLAKEDKLEQPFLWLPNLEGPTYGADPAHASDWILKGWHDGAPSLGWEDTIAFLSIPLILIVLQAVSTQLMQPPKNPDDP-------------NDPSNNVVLKALPLLIGWFSLNVPSALGIYWITNTLVST 368
BLAST of mRNA_H-elongata_contig180785.4823.1 vs. uniprot
Match: A0A7S2XXH5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXH5_9STRA) HSP 1 Score: 145 bits (365), Expect = 8.260e-39 Identity = 71/136 (52.21%), Postives = 94/136 (69.12%), Query Frame = 1
Query: 1 RSLLNLAKEDKLTESFLWIPSLEGPTFNSPPTEMMNWIKE-WTDGVPKLGWHDTLAYLTIPVILVLTQAVSMKIMQPVKDPNAPWTNRSKLLKMRAQRACHNTTVLKFLPLLIGWFSLSVPSALGLYWILNNFIST 405
R+LLNLA E+KL E+FLW+PSL+GPT+ + P + MNW+K W DGVP LGW DTLA+LT+PVILV++Q +S +IMQP P P N + K LPL+IG+FSL+VPS L +YW+ NNF++T
Sbjct: 210 RALLNLAAEEKLNEAFLWLPSLDGPTYGASPADGMNWLKTGWEDGVPPLGWPDTLAFLTLPVILVISQYISTQIMQPKVKPGEPDPMEQ------------NQLLFKVLPLMIGYFSLNVPSGLAIYWVANNFLTT 333
BLAST of mRNA_H-elongata_contig180785.4823.1 vs. uniprot
Match: A0A7S2H5X8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H5X8_9STRA) HSP 1 Score: 144 bits (362), Expect = 2.160e-38 Identity = 72/137 (52.55%), Postives = 95/137 (69.34%), Query Frame = 1
Query: 1 RSLLNLAKEDKLTESFLWIPSLEGPTFNSPPTEMMNWI-KEWTDGVPKLGWHDTLAYLTIPVILVLTQAVSMKIMQPV-KDPNAPWTNRSKLLKMRAQRACHNTTVLKFLPLLIGWFSLSVPSALGLYWILNNFIST 405
R++LNLAKE+ L ESFLW+P+LEGPT+ + P +WI K W DGVP LGW DTLA+L IP+ILV++Q SM+IMQP +DP N +LKFLP +IG+FSL+VP+ALG+YW+ NNF++T
Sbjct: 235 RAVLNLAKENALDESFLWLPNLEGPTYGADPASGSDWIFKNWVDGVPSLGWDDTLAFLAIPLILVVSQYASMQIMQPKSQDPQQQQAN----------------AILKFLPFMIGYFSLNVPAALGIYWVTNNFVTT 355
BLAST of mRNA_H-elongata_contig180785.4823.1 vs. uniprot
Match: W7U5Y4_9STRA (Membrane insertion protein, OxaA/YidC n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U5Y4_9STRA) HSP 1 Score: 142 bits (358), Expect = 4.130e-38 Identity = 63/135 (46.67%), Postives = 95/135 (70.37%), Query Frame = 1
Query: 1 RSLLNLAKEDKLTESFLWIPSLEGPTFNSPPTEMMNWIKEWTDGVPKLGWHDTLAYLTIPVILVLTQAVSMKIMQPVKDPNAPWTNRSKLLKMRAQRACHNTTVLKFLPLLIGWFSLSVPSALGLYWILNNFIST 405
R+L NLA ++L E FLW+P+LEGPT+ + P + MNW+K+W P LGWHDT+A+LT+P+IL+++Q++S +I+QP + + P +S+ +LKFLP ++G+FSL+VPS LG+YWI NN I+T
Sbjct: 259 RALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQSQ-------------AILKFLPFMVGYFSLNVPSGLGVYWIANNLITT 380
BLAST of mRNA_H-elongata_contig180785.4823.1 vs. uniprot
Match: A0A7S2EC37_9STRA (Hypothetical protein n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EC37_9STRA) HSP 1 Score: 142 bits (359), Expect = 7.280e-38 Identity = 71/137 (51.82%), Postives = 95/137 (69.34%), Query Frame = 1
Query: 1 RSLLNLAKEDKLTESFLWIPSLEGPTFNSPPTEMMNWI-KEWTDGVPKLGWHDTLAYLTIPVILVLTQAVSMKIMQPV-KDPNAPWTNRSKLLKMRAQRACHNTTVLKFLPLLIGWFSLSVPSALGLYWILNNFIST 405
R++LNLAK D L E FLW+P+LEGPT+ + PT +W+ K W DG P LGW +T+A+L IPVILV++Q VSM++MQP +DP N +LKFLPL+IG+FSLSVP+ALG+YW+ NNF++T
Sbjct: 247 RAVLNLAKADALDEPFLWLPNLEGPTYGADPTTGSDWLFKNWVDGTPSLGWDNTVAFLAIPVILVISQFVSMQLMQPKSEDPQQQQAN----------------AILKFLPLMIGYFSLSVPAALGIYWVTNNFVTT 367
BLAST of mRNA_H-elongata_contig180785.4823.1 vs. uniprot
Match: K8YSD2_NANGC (Preprotein translocase subunit YidC n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSD2_NANGC) HSP 1 Score: 142 bits (358), Expect = 1.270e-37 Identity = 63/135 (46.67%), Postives = 95/135 (70.37%), Query Frame = 1
Query: 1 RSLLNLAKEDKLTESFLWIPSLEGPTFNSPPTEMMNWIKEWTDGVPKLGWHDTLAYLTIPVILVLTQAVSMKIMQPVKDPNAPWTNRSKLLKMRAQRACHNTTVLKFLPLLIGWFSLSVPSALGLYWILNNFIST 405
R+L NLA ++L E FLW+P+LEGPT+ + P + MNW+K+W P LGWHDT+A+LT+P+IL+++Q++S +I+QP + + P +S+ +LKFLP ++G+FSL+VPS LG+YWI NN I+T
Sbjct: 221 RALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQSQ-------------AILKFLPFMVGYFSLNVPSGLGVYWIANNLITT 342
BLAST of mRNA_H-elongata_contig180785.4823.1 vs. uniprot
Match: K0SWS0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SWS0_THAOC) HSP 1 Score: 137 bits (345), Expect = 3.630e-37 Identity = 66/136 (48.53%), Postives = 94/136 (69.12%), Query Frame = 1
Query: 1 RSLLNLAKEDKLTESFLWIPSLEGPTFNSPPTEMMNWI-KEWTDGVPKLGWHDTLAYLTIPVILVLTQAVSMKIMQPVKDPNAPWTNRSKLLKMRAQRACHNTTVLKFLPLLIGWFSLSVPSALGLYWILNNFIST 405
RS+LNLAKE+ L E FL++P+LEGPT+ + P +WI K W DGVP LGW DT+A+L+IP+ LV++Q VSM +MQP D P ++ + +LK LP ++GWF+L+VPSALG+YW++NN ++T
Sbjct: 78 RSVLNLAKENALDEPFLFLPNLEGPTYGADPAHGSDWILKNWVDGVPSLGWEDTIAFLSIPIFLVISQFVSMNLMQPKSDD--PQQQQANI-------------ILKVLPFMVGWFALNVPSALGIYWVVNNVVTT 198
BLAST of mRNA_H-elongata_contig180785.4823.1 vs. uniprot
Match: A0A4D9D9H4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9H4_9STRA) HSP 1 Score: 140 bits (354), Expect = 1.750e-36 Identity = 65/138 (47.10%), Postives = 95/138 (68.84%), Query Frame = 1
Query: 1 RSLLNLAKEDKLTESFLWIPSLEGPTFNSPPTEMMNWIKEWTDGVPKLGWHDTLAYLTIPVILVLTQAVSMKIMQPV---KDPNAPWTNRSKLLKMRAQRACHNTTVLKFLPLLIGWFSLSVPSALGLYWILNNFIST 405
R+L NLA ++L E FLW+P+LEGPT+ + P + MNW+K+W P LGWHDT+A+LT+P+IL+++Q++S +I+QP +DPNA + +LKFLP ++G+FSL+VPS LG+YWI NN I+T
Sbjct: 321 RALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFNPSLGWHDTIAFLTVPLILIVSQSISQQILQPAASKEDPNAQ----------------QSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITT 442 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180785.4823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig180785.4823.1 >prot_H-elongata_contig180785.4823.1 ID=prot_H-elongata_contig180785.4823.1|Name=mRNA_H-elongata_contig180785.4823.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp RSLLNLAKEDKLTESFLWIPSLEGPTFNSPPTEMMNWIKEWTDGVPKLGWback to top mRNA from alignment at H-elongata_contig180785:4..1255- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig180785.4823.1 ID=mRNA_H-elongata_contig180785.4823.1|Name=mRNA_H-elongata_contig180785.4823.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1252bp|location=Sequence derived from alignment at H-elongata_contig180785:4..1255- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig180785:4..1255- >mRNA_H-elongata_contig180785.4823.1 ID=mRNA_H-elongata_contig180785.4823.1|Name=mRNA_H-elongata_contig180785.4823.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig180785:4..1255- (Himanthalia elongata Himel1 dioecious)back to top |