mRNA_H-elongata_contig180662.4814.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig180662.4814.1
Unique Name	mRNA_H-elongata_contig180662.4814.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig180662.4814.1 vs. uniprot
Match: A0A6H5K7D8_9PHAE (CobW C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7D8_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.920e-15
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1

Query:    1 QVPVTILTGFLGSGKTSLLNHLLHAQREKRIAVIENEFGAV 123
            +VPVTILTGFLGSGKT++LNHLLH QREKRIAVIENEFG V
Sbjct:  154 KVPVTILTGFLGSGKTTMLNHLLHVQREKRIAVIENEFGEV 194

[Close]

BLAST of mRNA_H-elongata_contig180662.4814.1 vs. uniprot
Match: A0A0G4FCK2_9ALVE (CobW C-terminal domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FCK2_9ALVE)

HSP 1 Score: 75.5 bits (184), Expect = 7.460e-15
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1

Query:    1 QVPVTILTGFLGSGKTSLLNHLLHAQREKRIAVIENEFGAV 123
            ++PVTILTGFLGSGKT+ LNHLLH QR+KR+AVIENEFGAV
Sbjct:  110 RIPVTILTGFLGSGKTTTLNHLLHVQRDKRVAVIENEFGAV 150

[Close]

BLAST of mRNA_H-elongata_contig180662.4814.1 vs. uniprot
Match: A0A0M0JLD7_9EUKA (Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JLD7_9EUKA)

HSP 1 Score: 73.9 bits (180), Expect = 1.640e-14
Identity = 32/41 (78.05%), Postives = 40/41 (97.56%), Query Frame = 1

Query:    1 QVPVTILTGFLGSGKTSLLNHLLHAQREKRIAVIENEFGAV 123
            ++P+T+LTGFLG+GKT+LLNHLLH Q++KRIAVIENEFGAV
Sbjct:  254 KIPITVLTGFLGAGKTTLLNHLLHQQQDKRIAVIENEFGAV 294

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BLAST of mRNA_H-elongata_contig180662.4814.1 vs. uniprot
Match: A0A7S0Q4E2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q4E2_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 3.550e-14
Identity = 32/41 (78.05%), Postives = 39/41 (95.12%), Query Frame = 1

Query:    1 QVPVTILTGFLGSGKTSLLNHLLHAQREKRIAVIENEFGAV 123
            ++P+T+LTGFLG+GKT+LLNHLLH QREK+IAVIENEFG V
Sbjct:  138 KIPITVLTGFLGAGKTTLLNHLLHEQREKKIAVIENEFGEV 178

[Close]

BLAST of mRNA_H-elongata_contig180662.4814.1 vs. uniprot
Match: A0A836CDY8_9STRA (CobW/HypB/UreG, nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDY8_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.850e-14
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 1

Query:    4 VPVTILTGFLGSGKTSLLNHLLHAQREKRIAVIENEFGAV 123
            +PVTILTGFLGSGKT++LNHLLH QRE+R+AVIENEFG V
Sbjct:   44 IPVTILTGFLGSGKTTVLNHLLHEQRERRVAVIENEFGEV 83

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BLAST of mRNA_H-elongata_contig180662.4814.1 vs. uniprot
Match: A0A813IBR1_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IBR1_POLGL)

HSP 1 Score: 69.7 bits (169), Expect = 8.070e-13
Identity = 31/41 (75.61%), Postives = 39/41 (95.12%), Query Frame = 1

Query:    1 QVPVTILTGFLGSGKTSLLNHLLHAQREKRIAVIENEFGAV 123
            ++P+TILTGFLGSGKT+LLN++L  QR+K+IAVIENEFGAV
Sbjct:  115 KIPITILTGFLGSGKTTLLNYILEEQRDKKIAVIENEFGAV 155

[Close]

BLAST of mRNA_H-elongata_contig180662.4814.1 vs. uniprot
Match: A0A7S1Q5R7_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1Q5R7_ALECA)

HSP 1 Score: 67.8 bits (164), Expect = 1.390e-12
Identity = 30/41 (73.17%), Postives = 38/41 (92.68%), Query Frame = 1

Query:    1 QVPVTILTGFLGSGKTSLLNHLLHAQREKRIAVIENEFGAV 123
            ++PVTILTGFLGSGKT+LLN++L  QR+K+IAVIENEFG +
Sbjct:  136 KIPVTILTGFLGSGKTTLLNYILQEQRDKKIAVIENEFGEI 176

[Close]

BLAST of mRNA_H-elongata_contig180662.4814.1 vs. uniprot
Match: A0A7S2P0G3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2P0G3_9DINO)

HSP 1 Score: 66.6 bits (161), Expect = 1.520e-12
Identity = 29/41 (70.73%), Postives = 38/41 (92.68%), Query Frame = 1

Query:    1 QVPVTILTGFLGSGKTSLLNHLLHAQREKRIAVIENEFGAV 123
            ++PVTILTGFLGSGKT+LLN++L  Q+EK+IA+IENEFG +
Sbjct:  108 KIPVTILTGFLGSGKTTLLNYILKEQQEKKIAIIENEFGEI 148

[Close]

BLAST of mRNA_H-elongata_contig180662.4814.1 vs. uniprot
Match: A0A812J598_SYMMI (YciC protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812J598_SYMMI)

HSP 1 Score: 67.0 bits (162), Expect = 3.210e-12
Identity = 29/41 (70.73%), Postives = 38/41 (92.68%), Query Frame = 1

Query:    1 QVPVTILTGFLGSGKTSLLNHLLHAQREKRIAVIENEFGAV 123
            ++PVTILTGFLG+GKT++LN++L  QREK+IA+IENEFG V
Sbjct:  168 KIPVTILTGFLGAGKTTMLNYILEEQREKKIAIIENEFGEV 208

[Close]

BLAST of mRNA_H-elongata_contig180662.4814.1 vs. uniprot
Match: A0A7S1Q7X7_ALECA (Hypothetical protein (Fragment) n=2 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1Q7X7_ALECA)

HSP 1 Score: 67.4 bits (163), Expect = 3.270e-12
Identity = 31/41 (75.61%), Postives = 38/41 (92.68%), Query Frame = 1

Query:    1 QVPVTILTGFLGSGKTSLLNHLLHAQREKRIAVIENEFGAV 123
            ++PVTILTGFLGSGKT+LLN++L  Q+EK+IAVIENEFG V
Sbjct:  120 KLPVTILTGFLGSGKTTLLNYILQEQKEKKIAVIENEFGEV 160

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig180662.4814.1 vs. uniprot

BLAST of mRNA_H-elongata_contig180662.4814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K7D8_9PHAE	2.920e-15	87.80	CobW C-terminal domain-containing protein n=2 Tax=...	[more]
A0A0G4FCK2_9ALVE	7.460e-15	82.93	CobW C-terminal domain-containing protein n=1 Tax=...	[more]
A0A0M0JLD7_9EUKA	1.640e-14	78.05	Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=...	[more]
A0A7S0Q4E2_9EUKA	3.550e-14	78.05	Hypothetical protein n=1 Tax=Coccolithus braarudii...	[more]
A0A836CDY8_9STRA	4.850e-14	82.50	CobW/HypB/UreG, nucleotide-binding domain-containi...	[more]
A0A813IBR1_POLGL	8.070e-13	75.61	Hypothetical protein n=2 Tax=Polarella glacialis T...	[more]
A0A7S1Q5R7_ALECA	1.390e-12	73.17	Hypothetical protein (Fragment) n=1 Tax=Alexandriu...	[more]
A0A7S2P0G3_9DINO	1.520e-12	70.73	Hypothetical protein (Fragment) n=1 Tax=Brandtodin...	[more]
A0A812J598_SYMMI	3.210e-12	70.73	YciC protein (Fragment) n=1 Tax=Symbiodinium micro...	[more]
A0A7S1Q7X7_ALECA	3.270e-12	75.61	Hypothetical protein (Fragment) n=2 Tax=Alexandriu...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig180662	contig	H-elongata_contig180662:309..431 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	77.0
Seed ortholog evalue	2.2e-12
Seed eggNOG ortholog	2880.D7G996
EggNOG free text desc.	ATP binding
EggNOG OGs	COG0523@1,KOG2743@2759
COG Functional cat.	F
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	123
Cds size	123
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930041.8669987-CDS-H-elongata_contig180662:308..431	1622930041.8669987-CDS-H-elongata_contig180662:308..431	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig180662 309..431 -
1691679258.2187595-CDS-H-elongata_contig180662:308..431	1691679258.2187595-CDS-H-elongata_contig180662:308..431	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig180662 309..431 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig180662.4814.1	prot_H-elongata_contig180662.4814.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig180662 309..431 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig180662:309..431-
coding sequence from alignment at H-elongata_contig180662:309..431-

protein sequence of mRNA_H-elongata_contig180662.4814.1

>prot_H-elongata_contig180662.4814.1 ID=prot_H-elongata_contig180662.4814.1|Name=mRNA_H-elongata_contig180662.4814.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
QVPVTILTGFLGSGKTSLLNHLLHAQREKRIAVIENEFGAV

mRNA from alignment at H-elongata_contig180662:309..431-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig180662.4814.1 ID=mRNA_H-elongata_contig180662.4814.1|Name=mRNA_H-elongata_contig180662.4814.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig180662:309..431- (Himanthalia elongata Himel1 dioecious)
CAGGTGCCCGTTACCATACTCACGGGCTTCCTAGGCTCCGGGAAGACCAG
CCTGCTAAACCACCTGCTCCATGCTCAGCGGGAGAAGCGGATCGCAGTAA
TCGAAAACGAGTTCGGAGCGGTG

Coding sequence (CDS) from alignment at H-elongata_contig180662:309..431-

>mRNA_H-elongata_contig180662.4814.1 ID=mRNA_H-elongata_contig180662.4814.1|Name=mRNA_H-elongata_contig180662.4814.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig180662:309..431- (Himanthalia elongata Himel1 dioecious)
CAGGTGCCCGTTACCATACTCACGGGCTTCCTAGGCTCCGGGAAGACCAG
CCTGCTAAACCACCTGCTCCATGCTCAGCGGGAGAAGCGGATCGCAGTAA
TCGAAAACGAGTTCGGAGCGGTGCAGGTGCCCGTTACCATACTCACGGGC
TTCCTAGGCTCCGGGAAGACCAGCCTGCTAAACCACCTGCTCCATGCTCA
GCGGGAGAAGCGGATCGCAGTAATCGAAAACGAGTTCGGAGCGGTG