mRNA_H-elongata_contig180633.4811.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig180633.4811.1
Unique NamemRNA_H-elongata_contig180633.4811.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: UPI001CF4D73B (uncharacterized protein LOC122958583 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF4D73B)

HSP 1 Score: 66.2 bits (160), Expect = 7.010e-11
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    1 MLSYLEVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEHRVTEYCIAFGIDPKCW 240
            +++ +EVL +A+   IE  ++K  L +AGHV+R+ D RL KIVM GE+  G R RG P KR + ++ +   A  ID + W
Sbjct:  428 LITNVEVLEQAEVSSIEAMILKYQLRWAGHVSRLEDHRLPKIVMFGELSSGHRDRGVPTKRFKDKLKKSLTACNIDHRQW 507          
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: A0A8K0EG69_BRALA (Hypp8672 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0EG69_BRALA)

HSP 1 Score: 62.0 bits (149), Expect = 2.220e-9
Identity = 33/75 (44.00%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   16 EVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEHRVTEYCIAFGIDPKCW 240
            EVL RA+   IE  +MK  L +AGHV+RM D RL KI++ GE+  G R RG P KR +  + +      ID   W
Sbjct:  947 EVLERAEITSIEAMLMKTQLRWAGHVSRMEDHRLPKIILYGELSTGHRNRGAPKKRFKDTLKKSLQCCNIDYHQW 1021          
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: UPI0016045646 (uncharacterized protein LOC118413616 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016045646)

HSP 1 Score: 61.2 bits (147), Expect = 3.740e-9
Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    4 LSYLEVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEHRVTEYCIAFGIDPKCW 240
            ++ +EVL +A+   IE  +MK  L +AGHV+RM D RL KIV+ GE+  G R RG P KR +  + +   +  ID   W
Sbjct:  200 ITNVEVLEQAEIPSIEATLMKTQLRWAGHVSRMEDHRLPKIVLYGELSTGYRHRGAPKKRFKDSLKKSLASCHIDLHQW 278          
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR)

HSP 1 Score: 60.1 bits (144), Expect = 1.050e-8
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   16 EVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEHRVTEYCIAFGIDPKCW 240
            EVL+RAD   I   + +  L +AGHVARM D+RL K+++ GE+  GKR +G   KR +  +     AF I+P  W
Sbjct:  816 EVLVRADLPSIFTILAQSQLRWAGHVARMKDNRLPKMLLFGELTQGKRSQGGQKKRYKDTLKAALKAFNINPINW 890          
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: A0A6S7JBE9_PARCT (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBE9_PARCT)

HSP 1 Score: 58.5 bits (140), Expect = 3.540e-8
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   16 EVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEH 192
            EVL RA C  IE  + KR L +AGH+ RM D+RL KI++ GE+  G R  G+P KR  H
Sbjct:  294 EVLERAKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRTSH 352          
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT)

HSP 1 Score: 58.2 bits (139), Expect = 4.210e-8
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   16 EVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEHRVTEYCIAFGIDPKCW 240
            EVL RA C  +E  + KR L +AGH+ RM D+RL KI++ GE+  G R  G+P KR +  + +   +  +  + W
Sbjct:  211 EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSW 285          
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT)

HSP 1 Score: 58.2 bits (139), Expect = 4.820e-8
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   16 EVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEHRVTEYCIAFGIDPKCW 240
            EVL RA C  +E  + KR L +AGH+ RM D+RL KI++ GE+  G R  G+P KR +  + +   +  +  + W
Sbjct:  278 EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSW 352          
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT)

HSP 1 Score: 58.2 bits (139), Expect = 4.980e-8
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   16 EVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEHRVTEYCIAFGIDPKCW 240
            EVL RA C  +E  + KR L +AGH+ RM D+RL KI++ GE+  G R  G+P KR +  + +   +  +  + W
Sbjct:  564 EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSW 638          
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: UPI0013901FBB (uncharacterized protein K02A2.6-like n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013901FBB)

HSP 1 Score: 58.2 bits (139), Expect = 5.050e-8
Identity = 32/75 (42.67%), Postives = 42/75 (56.00%), Query Frame = 1
Query:   16 EVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEHRVTEYCIAFGIDPKCW 240
            EVL RA   CI   + +  L +AGHVARM D+RL K ++ GE+  GKR +G   KR +  +     AF ID   W
Sbjct:   27 EVLARAGLPCIHTILKQSQLRWAGHVARMPDERLPKKLLFGELQHGKRCKGGQKKRFKDTLKLSLKAFNIDHTSW 101          
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: K7EZV3_PELSI (Reverse transcriptase domain-containing protein n=1 Tax=Pelodiscus sinensis TaxID=13735 RepID=K7EZV3_PELSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.000e-7
Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   16 EVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEHRVTEYCIAFGIDPKCW 240
            EVL  A+   IE  V+K  L +AGH+ARM + RL KIV+ GE+  G R  G P KR +  + +   A  ID + W
Sbjct:  176 EVLELAEVTSIEAMVLKIQLRWAGHIARMENHRLPKIVLYGELSSGYRDIGAPRKRYKDSLKKSLTACCIDHRQW 250          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
UPI001CF4D73B7.010e-1141.25uncharacterized protein LOC122958583 n=1 Tax=Acrop... [more]
A0A8K0EG69_BRALA2.220e-944.00Hypp8672 protein n=1 Tax=Branchiostoma lanceolatum... [more]
UPI00160456463.740e-941.77uncharacterized protein LOC118413616 n=1 Tax=Branc... [more]
A0A8C5PP25_9ANUR1.050e-842.67Reverse transcriptase domain-containing protein n=... [more]
A0A6S7JBE9_PARCT3.540e-850.85Reverse transcriptase domain-containing protein (F... [more]
A0A6S7JKI9_PARCT4.210e-838.67Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A6S7K883_PARCT4.820e-838.67RNA-directed DNA polymerase from mobile element jo... [more]
A0A7D9M5G6_PARCT4.980e-838.67RNA-directed DNA polymerase from mobile element jo... [more]
UPI0013901FBB5.050e-842.67uncharacterized protein K02A2.6-like n=1 Tax=Nemat... [more]
K7EZV3_PELSI1.000e-742.67Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180633contigH-elongata_contig180633:748..987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.8
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog7739.XP_002599408.1
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48EZY@7711,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.6352625-CDS-H-elongata_contig180633:747..9871622930041.6352625-CDS-H-elongata_contig180633:747..987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180633 748..987 -
1691679258.1225595-CDS-H-elongata_contig180633:747..9871691679258.1225595-CDS-H-elongata_contig180633:747..987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180633 748..987 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180633.4811.1prot_H-elongata_contig180633.4811.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig180633 748..987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig180633.4811.1

>prot_H-elongata_contig180633.4811.1 ID=prot_H-elongata_contig180633.4811.1|Name=mRNA_H-elongata_contig180633.4811.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MLSYLEVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVG
GKRKRGQPAKRLEHRVTEYCIAFGIDPKCW
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mRNA from alignment at H-elongata_contig180633:748..987-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig180633.4811.1 ID=mRNA_H-elongata_contig180633.4811.1|Name=mRNA_H-elongata_contig180633.4811.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig180633:748..987- (Himanthalia elongata Himel1 dioecious)
ATGCTCTCATACCTCGAGGTCCTCCTCAGGGCTGACTGTGAGTGCATTGA GGTTGCTGTGATGAAGCGCGTCCTCCACTACGCCGGCCACGTCGCGCGCA TGCACGACGATCGCCTCTCCAAAATCGTCATGCGTGGCGAAATGGTCGGA GGGAAGAGAAAACGGGGCCAGCCTGCGAAACGCCTCGAACACCGTGTCAC GGAATACTGCATTGCCTTCGGAATCGACCCCAAGTGTTGG
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Coding sequence (CDS) from alignment at H-elongata_contig180633:748..987-

>mRNA_H-elongata_contig180633.4811.1 ID=mRNA_H-elongata_contig180633.4811.1|Name=mRNA_H-elongata_contig180633.4811.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig180633:748..987- (Himanthalia elongata Himel1 dioecious)
ATGCTCTCATACCTCGAGGTCCTCCTCAGGGCTGACTGTGAGTGCATTGA
GGTTGCTGTGATGAAGCGCGTCCTCCACTACGCCGGCCACGTCGCGCGCA
TGCACGACGATCGCCTCTCCAAAATCGTCATGCGTGGCGAAATGGTCGGA
GGGAAGAGAAAACGGGGCCAGCCTGCGAAACGCCTCGAACACCGTGTCAC
GGAATACTGCATTGCCTTCGGAATCGACCCCAAGTGTTGGATGCTCTCAT
ACCTCGAGGTCCTCCTCAGGGCTGACTGTGAGTGCATTGAGGTTGCTGTG
ATGAAGCGCGTCCTCCACTACGCCGGCCACGTCGCGCGCATGCACGACGA
TCGCCTCTCCAAAATCGTCATGCGTGGCGAAATGGTCGGAGGGAAGAGAA
AACGGGGCCAGCCTGCGAAACGCCTCGAACACCGTGTCACGGAATACTGC
ATTGCCTTCGGAATCGACCCCAAGTGTTGG
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