mRNA_H-elongata_contig180393.4800.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig180393.4800.1
Unique NamemRNA_H-elongata_contig180393.4800.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig180393.4800.1 vs. uniprot
Match: D8LIV9_ECTSI (Novel protein containing a T-complex protein 11 domain (Zgc:73347) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV9_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 7.260e-24
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:  106 QGFDSEMKQAAASKNAFAIVPLLPRAFEFVFARIEEIKRDTANAHLRLIAPYLVRHGADYERAKFDVR 309
            +GFD+ M+ A AS +  AI+PLLPR FEFVFA++EEIKRDTANAH+RL+APYL RHGA YERAKF+ R
Sbjct:  568 KGFDASMEAAIASGDPLAIIPLLPRVFEFVFAQMEEIKRDTANAHIRLVAPYLARHGAPYERAKFEAR 635
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BLAST of mRNA_H-elongata_contig180393.4800.1 vs. uniprot
Match: A0A835Z8D6_9STRA (T-complex protein 11-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8D6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.070e-15
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:  106 QGFDSEMKQAAASKNAFAIVPLLPRAFEFVFARIEEIKRDTANAHLRLIAPYLVRHGADYERAKFDVR 309
            Q F+ +M  AA+S +  A V LLPR FEFVFARI+E+++D ANAH+ ++ PYL +HG +YER KF+ R
Sbjct:  665 QRFNDDMAAAASSGDPGAPVRLLPRIFEFVFARIDEVRQDAANAHVAVLVPYLQQHGVEYERDKFNER 732
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BLAST of mRNA_H-elongata_contig180393.4800.1 vs. uniprot
Match: A0A067CQ89_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQ89_SAPPC)

HSP 1 Score: 56.6 bits (135), Expect = 5.430e-7
Identity = 26/70 (37.14%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:  100 TNQGFDSEMKQAAASKNAFAIVPLLPRAFEFVFARIEEIKRDTANAHLRLIAPYLVRHGADYERAKFDVR 309
            + Q +   +++  AS+ A+  V  L R  +F FA+++EI+ D+ NAHL+++APY+ RHG ++E+ KF ++
Sbjct:  513 STQAWLDRLQETPASEAAW--VEALVRFLQFGFAKVDEIQIDSMNAHLKVLAPYVARHGVEHEQKKFALK 580
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BLAST of mRNA_H-elongata_contig180393.4800.1 vs. uniprot
Match: A0A2D4C9H7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9H7_PYTIN)

HSP 1 Score: 54.3 bits (129), Expect = 3.270e-6
Identity = 26/68 (38.24%), Postives = 37/68 (54.41%), Query Frame = 1 
Query:  127 KQAAASKNAFAIVPLLPRAFEFVFARIEEIKRDTANAHLRLIAPYLVRHGADYERAKFDVRKKKTGML 330
            +   A K AF +  LL     F F ++EEI+ D  NAHL ++A YLV HG DYE+ K   + +    +
Sbjct:  184 RHVEARKAAFNVQTLLVDFLAFTFEKVEEIRVDALNAHLDMLAAYLVHHGVDYEQKKLTSKLQSGASM 251
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BLAST of mRNA_H-elongata_contig180393.4800.1 vs. uniprot
Match: W4GLB1_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLB1_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.100e-5
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:  184 FEFVFARIEEIKRDTANAHLRLIAPYLVRHGADYERAKFDVR 309
            F F F + +EI+ D+ NAHL L+APYL RHG ++E  KF+ R
Sbjct:  560 FRFCFDKADEIRGDSLNAHLALLAPYLQRHGVEHEAKKFEQR 601
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180393.4800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LIV9_ECTSI7.260e-2470.59Novel protein containing a T-complex protein 11 do... [more]
A0A835Z8D6_9STRA8.070e-1554.41T-complex protein 11-domain-containing protein n=1... [more]
A0A067CQ89_SAPPC5.430e-737.14Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A2D4C9H7_PYTIN3.270e-638.24Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
W4GLB1_9STRA3.100e-552.38Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180393contigH-elongata_contig180393:5..337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue2.1e-20
Seed eggNOG ortholog2880.D8LIV9
EggNOG free text desc.regulation of sperm capacitation
EggNOG OGsKOG1981@1,KOG1981@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930040.7089021-CDS-H-elongata_contig180393:4..3371622930040.7089021-CDS-H-elongata_contig180393:4..337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180393 5..337 +
1691679257.7648888-CDS-H-elongata_contig180393:4..3371691679257.7648888-CDS-H-elongata_contig180393:4..337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180393 5..337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180393.4800.1prot_H-elongata_contig180393.4800.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig180393 5..337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig180393.4800.1

>prot_H-elongata_contig180393.4800.1 ID=prot_H-elongata_contig180393.4800.1|Name=mRNA_H-elongata_contig180393.4800.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
LLKNPPISKFIKVFDPIKKPPPPPARARVCHWHTNQGFDSEMKQAAASKN
AFAIVPLLPRAFEFVFARIEEIKRDTANAHLRLIAPYLVRHGADYERAKF
DVRKKKTGML*
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mRNA from alignment at H-elongata_contig180393:5..337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig180393.4800.1 ID=mRNA_H-elongata_contig180393.4800.1|Name=mRNA_H-elongata_contig180393.4800.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig180393:5..337+ (Himanthalia elongata Himel1 dioecious)
CTGTTGAAAAACCCCCCCATATCAAAGTTCATCAAAGTGTTTGACCCCAT
AAAAAAGCCCCCCCCCCCCCCCGCGCGCGCGCGTGTGTGTCATTGGCACA
CCAATCAGGGTTTCGATTCCGAAATGAAGCAGGCAGCAGCTTCCAAGAAC
GCGTTCGCGATCGTCCCCCTGCTTCCCCGAGCATTCGAGTTCGTATTCGC
GCGCATCGAAGAGATCAAGCGGGACACGGCCAACGCCCACCTTCGGCTGA
TCGCGCCCTACCTCGTCCGCCACGGAGCTGACTACGAACGGGCAAAGTTC
GACGTACGTAAAAAAAAAACTGGTATGCTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig180393:5..337+

>mRNA_H-elongata_contig180393.4800.1 ID=mRNA_H-elongata_contig180393.4800.1|Name=mRNA_H-elongata_contig180393.4800.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig180393:5..337+ (Himanthalia elongata Himel1 dioecious)
CTGTTGAAAAACCCCCCCATATCAAAGTTCATCAAAGTGTTTGACCCCAT
AAAAAAGCCCCCCCCCCCCCCCGCGCGCGCGCGTGTGTGTCATTGGCACA
CCAATCAGGGTTTCGATTCCGAAATGAAGCAGGCAGCAGCTTCCAAGAAC
GCGTTCGCGATCGTCCCCCTGCTTCCCCGAGCATTCGAGTTCGTATTCGC
GCGCATCGAAGAGATCAAGCGGGACACGGCCAACGCCCACCTTCGGCTGA
TCGCGCCCTACCTCGTCCGCCACGGAGCTGACTACGAACGGGCAAAGTTC
GACGTACGTAAAAAAAAAACTGGTATGCTGTAACTGTTGAAAAACCCCCC
CATATCAAAGTTCATCAAAGTGTTTGACCCCATAAAAAAGCCCCCCCCCC
CCCCCGCGCGCGCGCGTGTGTGTCATTGGCACACCAATCAGGGTTTCGAT
TCCGAAATGAAGCAGGCAGCAGCTTCCAAGAACGCGTTCGCGATCGTCCC
CCTGCTTCCCCGAGCATTCGAGTTCGTATTCGCGCGCATCGAAGAGATCA
AGCGGGACACGGCCAACGCCCACCTTCGGCTGATCGCGCCCTACCTCGTC
CGCCACGGAGCTGACTACGAACGGGCAAAGTTCGACGTACGTAAAAAAAA
AACTGGTATGCTGTAA
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