mRNA_H-elongata_contig180334.4798.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig180334.4798.1
Unique NamemRNA_H-elongata_contig180334.4798.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180334.4798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180334contigH-elongata_contig180334:461..811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930040.5582519-CDS-H-elongata_contig180334:460..6191622930040.5582519-CDS-H-elongata_contig180334:460..619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180334 461..619 -
1691679257.6746867-CDS-H-elongata_contig180334:460..6191691679257.6746867-CDS-H-elongata_contig180334:460..619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180334 461..619 -
1622930040.5751748-CDS-H-elongata_contig180334:676..8111622930040.5751748-CDS-H-elongata_contig180334:676..811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180334 677..811 -
1691679257.691821-CDS-H-elongata_contig180334:676..8111691679257.691821-CDS-H-elongata_contig180334:676..811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180334 677..811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180334.4798.1prot_H-elongata_contig180334.4798.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig180334 461..811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig180334.4798.1

>prot_H-elongata_contig180334.4798.1 ID=prot_H-elongata_contig180334.4798.1|Name=mRNA_H-elongata_contig180334.4798.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
CWVCKSTGHVSLACPAQFCQRCGKKGHHVRQCKKEEYNTVMAVGQAYTAH
TEGKCLVSVGVDGEHSRVGKEPWILDSGATGHFTHDGSRLSGYAECSR
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mRNA from alignment at H-elongata_contig180334:461..811-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig180334.4798.1 ID=mRNA_H-elongata_contig180334.4798.1|Name=mRNA_H-elongata_contig180334.4798.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at H-elongata_contig180334:461..811- (Himanthalia elongata Himel1 dioecious)
TGCTGGGTGTGCAAAAGCACTGGGCATGTTAGTCTCGCCTGCCCTGCTCA
GTTCTGTCAAAGATGCGGTAAGAAGGGGCACCATGTCCGCCAGTGCAAGA
AAGAGGAGTACAACACGGTGATGGCGGTGGGCCAAGTCGAGGAGCTTGCA
CCAGGAAACGAGTCACCGGTCAGCTCAGACGTCAAGCTGGAGGCGTACAC
TGCCCACACCGAAGGTAAGTGTCTGGTTTCTGTTGGGGTGGATGGCGAAC
ATTCGCGCGTGGGGAAAGAACCCTGGATACTGGATTCGGGGGCCACAGGT
CATTTTACGCATGACGGCAGCAGACTTTCCGGCTACGCGGAGTGCAGCAG
A
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Coding sequence (CDS) from alignment at H-elongata_contig180334:461..811-

>mRNA_H-elongata_contig180334.4798.1 ID=mRNA_H-elongata_contig180334.4798.1|Name=mRNA_H-elongata_contig180334.4798.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig180334:461..811- (Himanthalia elongata Himel1 dioecious)
TGCTGGGTGTGCAAAAGCACTGGGCATGTTAGTCTCGCCTGCCCTGCTCA
GTTCTGTCAAAGATGCGGTAAGAAGGGGCACCATGTCCGCCAGTGCAAGA
AAGAGGAGTACAACACGGTGATGGCGGTGGGCCAATGCTGGGTGTGCAAA
AGCACTGGGCATGTTAGTCTCGCCTGCCCTGCTCAGTTCTGTCAAAGATG
CGGTAAGAAGGGGCACCATGTCCGCCAGTGCAAGAAAGAGGAGTACAACA
CGGTGATGGCGGTGGGCCAAGCGTACACTGCCCACACCGAAGGTAAGTGT
CTGGTTTCTGTTGGGGTGGATGGCGAACATTCGCGCGTGGGGAAAGAACC
CTGGATACTGGATTCGGGGGCCACAGGTCATTTTACGCATGACGGCAGCA
GACTTTCCGGCTACGCGGAGTGCAGCAGAGCGTACACTGCCCACACCGAA
GGTAAGTGTCTGGTTTCTGTTGGGGTGGATGGCGAACATTCGCGCGTGGG
GAAAGAACCCTGGATACTGGATTCGGGGGCCACAGGTCATTTTACGCATG
ACGGCAGCAGACTTTCCGGCTACGCGGAGTGCAGCAGA
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