mRNA_H-elongata_contig180139.4792.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig180139.4792.1
Unique NamemRNA_H-elongata_contig180139.4792.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig180139.4792.1 vs. uniprot
Match: A0A6H5KVH0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH0_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.240e-15
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 ILPEKHSGFRLNHSTTDMMFMIRRLHGLARKKRIPLYVVCFIGITKACDSVDQTLLW 171
            ILPE+  GFR   ST DMMF++RRL  L R+K+IPLY+ CF+ + KA DSVDQ +LW
Sbjct:   62 ILPEEQCGFRPGRSTVDMMFVVRRLQELGRRKKIPLYL-CFVDLNKAYDSVDQEMLW 117
[Close]
BLAST of mRNA_H-elongata_contig180139.4792.1 vs. uniprot
Match: A0A6H5KQ53_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ53_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 7.400e-15
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 ILPEKHSGFRLNHSTTDMMFMIRRLHGLARKKRIPLYVVCFIGITKACDSVDQTLLW 171
            ILPE+  GFR   ST DM+F++RRL  L R+K+IPLY+ CF+ + KA DSVD+ LLW
Sbjct:   42 ILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYM-CFVDLNKAYDSVDRQLLW 97
[Close]
BLAST of mRNA_H-elongata_contig180139.4792.1 vs. uniprot
Match: A0A6H5KLC1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.640e-14
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 ILPEKHSGFRLNHSTTDMMFMIRRLHGLARKKRIPLYVVCFIGITKACDSVDQTLLW 171
            ILPE+  GFR   ST DM+F++RRL  L R+K+IPLY+ CF+ + KA DSVD+ +LW
Sbjct:  108 ILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYM-CFVDLNKAYDSVDREMLW 163
[Close]
BLAST of mRNA_H-elongata_contig180139.4792.1 vs. uniprot
Match: A0A6H5JSW8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSW8_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.730e-14
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 ILPEKHSGFRLNHSTTDMMFMIRRLHGLARKKRIPLYVVCFIGITKACDSVDQTLLW 171
            ILPE+  GFR   ST DM+F++RRL  L R+K+IPLY+ CF+ + KA DSVD+ +LW
Sbjct:  104 ILPEEQCGFRPGRSTVDMLFVLRRLQELGRRKKIPLYM-CFVDLNKAYDSVDREMLW 159
[Close]
BLAST of mRNA_H-elongata_contig180139.4792.1 vs. uniprot
Match: A0A6H5KWL9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL9_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.780e-14
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 ILPEKHSGFRLNHSTTDMMFMIRRLHGLARKKRIPLYVVCFIGITKACDSVDQTLLW 171
            ILPE+  GFR   ST  M+F++RRL  L R++RIPLY+ CFI + KA DSVD+ LLW
Sbjct:   31 ILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYM-CFIDLQKAYDSVDRELLW 86
[Close]
BLAST of mRNA_H-elongata_contig180139.4792.1 vs. uniprot
Match: A0A6H5KZG0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG0_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 6.810e-14
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 ILPEKHSGFRLNHSTTDMMFMIRRLHGLARKKRIPLYVVCFIGITKACDSVDQTLLW 171
            ILPE+  GFR   ST  M+F++RRL  L R++RIPLY+ CFI + KA DSVD+ LLW
Sbjct:   55 ILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYM-CFIDLQKAYDSVDRELLW 110
[Close]
BLAST of mRNA_H-elongata_contig180139.4792.1 vs. uniprot
Match: A0A6H5J7A9_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7A9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.020e-13
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 ILPEKHSGFRLNHSTTDMMFMIRRLHGLARKKRIPLYVVCFIGITKACDSVDQTLLW 171
            ILPE+  GFR   ST DM+F++RRL  L R+K+IPLY+ CF+ + KA DSVD+ +LW
Sbjct:  190 ILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYM-CFVDLNKAYDSVDREMLW 245
[Close]
BLAST of mRNA_H-elongata_contig180139.4792.1 vs. uniprot
Match: A0A6H5LQV6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQV6_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.110e-13
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 ILPEKHSGFRLNHSTTDMMFMIRRLHGLARKKRIPLYVVCFIGITKACDSVDQTLLW 171
            ILPE+  GFR   ST DM+F++RRL  L R+K+IPLY+ CF+ + KA DSVD+ +LW
Sbjct:  237 ILPEEQGGFRPGRSTVDMLFVVRRLQELGRRKKIPLYM-CFVDLNKAYDSVDREMLW 292
[Close]
BLAST of mRNA_H-elongata_contig180139.4792.1 vs. uniprot
Match: A0A6H5JVE1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.140e-13
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 ILPEKHSGFRLNHSTTDMMFMIRRLHGLARKKRIPLYVVCFIGITKACDSVDQTLLW 171
            ILPE+  GFR   ST DM+F++RRL  L R+K+IPLY+ CF+ + KA DSVD+ +LW
Sbjct:   79 ILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYM-CFVDLNKAYDSVDREMLW 134
[Close]
BLAST of mRNA_H-elongata_contig180139.4792.1 vs. uniprot
Match: A0A6H5K3W9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W9_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.180e-13
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 ILPEKHSGFRLNHSTTDMMFMIRRLHGLARKKRIPLYVVCFIGITKACDSVDQTLLW 171
            ILPE+  GFR   ST DM+F++RRL  L R+K+IPLY  CF+ + KA DSVD+ +LW
Sbjct:  127 ILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYT-CFVDLNKAYDSVDREMLW 182
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180139.4792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVH0_9PHAE2.240e-1559.65Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ53_9PHAE7.400e-1557.89Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KLC1_9PHAE1.640e-1456.14Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JSW8_9PHAE3.730e-1456.14Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KWL9_9PHAE3.780e-1457.89Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KZG0_9PHAE6.810e-1457.89Reverse transcriptase domain-containing protein (F... [more]
A0A6H5J7A9_9PHAE1.020e-1356.14Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LQV6_9PHAE1.110e-1356.14Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JVE1_9PHAE1.140e-1356.14Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K3W9_9PHAE1.180e-1356.14Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180139contigH-elongata_contig180139:13..183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930038.8811576-CDS-H-elongata_contig180139:12..1831622930038.8811576-CDS-H-elongata_contig180139:12..183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180139 13..183 +
1691679257.143178-CDS-H-elongata_contig180139:12..1831691679257.143178-CDS-H-elongata_contig180139:12..183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180139 13..183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180139.4792.1prot_H-elongata_contig180139.4792.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig180139 13..183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig180139.4792.1

>prot_H-elongata_contig180139.4792.1 ID=prot_H-elongata_contig180139.4792.1|Name=mRNA_H-elongata_contig180139.4792.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
ILPEKHSGFRLNHSTTDMMFMIRRLHGLARKKRIPLYVVCFIGITKACDS
VDQTLLW
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mRNA from alignment at H-elongata_contig180139:13..183+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig180139.4792.1 ID=mRNA_H-elongata_contig180139.4792.1|Name=mRNA_H-elongata_contig180139.4792.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig180139:13..183+ (Himanthalia elongata Himel1 dioecious)
ATTCTGCCGGAGAAACATAGTGGTTTCCGGCTGAACCATTCTACCACCGA
TATGATGTTCATGATTCGTAGACTACACGGGTTGGCGCGGAAGAAACGGA
TTCCGTTGTATGTAGTATGCTTTATCGGCATTACAAAAGCGTGCGACTCT
GTTGACCAAACCCTCCTCTGG
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Coding sequence (CDS) from alignment at H-elongata_contig180139:13..183+

>mRNA_H-elongata_contig180139.4792.1 ID=mRNA_H-elongata_contig180139.4792.1|Name=mRNA_H-elongata_contig180139.4792.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig180139:13..183+ (Himanthalia elongata Himel1 dioecious)
ATTCTGCCGGAGAAACATAGTGGTTTCCGGCTGAACCATTCTACCACCGA
TATGATGTTCATGATTCGTAGACTACACGGGTTGGCGCGGAAGAAACGGA
TTCCGTTGTATGTAGTATGCTTTATCGGCATTACAAAAGCGTGCGACTCT
GTTGACCAAACCCTCCTCTGGATTCTGCCGGAGAAACATAGTGGTTTCCG
GCTGAACCATTCTACCACCGATATGATGTTCATGATTCGTAGACTACACG
GGTTGGCGCGGAAGAAACGGATTCCGTTGTATGTAGTATGCTTTATCGGC
ATTACAAAAGCGTGCGACTCTGTTGACCAAACCCTCCTCTGG
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