mRNA_H-elongata_contig180132.4791.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig180132.4791.1
Unique NamemRNA_H-elongata_contig180132.4791.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig180132.4791.1 vs. uniprot
Match: A0A0W8DA93_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DA93_PHYNI)

HSP 1 Score: 68.9 bits (167), Expect = 3.730e-12
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 VWYNVGTLYDSCNQTTDALDAYNKAAELGASGGFIHERIAAL 126
            VWYNVGTLYD+CNQT+DA DAY KAAELGA   FI ER+  L
Sbjct:  133 VWYNVGTLYDTCNQTSDARDAYQKAAELGADAQFIRERLELL 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180132.4791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0W8DA93_PHYNI3.730e-1273.81Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180132contigH-elongata_contig180132:862..1047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930038.7836092-CDS-H-elongata_contig180132:861..10471622930038.7836092-CDS-H-elongata_contig180132:861..1047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180132 862..1047 +
1691679257.135279-CDS-H-elongata_contig180132:861..10471691679257.135279-CDS-H-elongata_contig180132:861..1047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180132 862..1047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180132.4791.1prot_H-elongata_contig180132.4791.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig180132 862..1047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig180132.4791.1

>prot_H-elongata_contig180132.4791.1 ID=prot_H-elongata_contig180132.4791.1|Name=mRNA_H-elongata_contig180132.4791.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
VWYNVGTLYDSCNQTTDALDAYNKAAELGASGGFIHERIAALMKKMNSGG
GSGGGGGGGGPG
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mRNA from alignment at H-elongata_contig180132:862..1047+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig180132.4791.1 ID=mRNA_H-elongata_contig180132.4791.1|Name=mRNA_H-elongata_contig180132.4791.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig180132:862..1047+ (Himanthalia elongata Himel1 dioecious)
GTATGGTACAACGTGGGGACGTTGTACGACAGCTGCAATCAAACCACGGA
CGCGCTTGACGCCTACAACAAGGCGGCGGAGCTGGGGGCGAGCGGTGGCT
TTATCCACGAGCGTATCGCCGCGCTCATGAAAAAGATGAACTCTGGGGGC
GGAAGCGGCGGAGGCGGAGGCGGAGGCGGGCCGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig180132:862..1047+

>mRNA_H-elongata_contig180132.4791.1 ID=mRNA_H-elongata_contig180132.4791.1|Name=mRNA_H-elongata_contig180132.4791.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig180132:862..1047+ (Himanthalia elongata Himel1 dioecious)
GTATGGTACAACGTGGGGACGTTGTACGACAGCTGCAATCAAACCACGGA
CGCGCTTGACGCCTACAACAAGGCGGCGGAGCTGGGGGCGAGCGGTGGCT
TTATCCACGAGCGTATCGCCGCGCTCATGAAAAAGATGAACTCTGGGGGC
GGAAGCGGCGGAGGCGGAGGCGGAGGCGGGCCGGGAGTATGGTACAACGT
GGGGACGTTGTACGACAGCTGCAATCAAACCACGGACGCGCTTGACGCCT
ACAACAAGGCGGCGGAGCTGGGGGCGAGCGGTGGCTTTATCCACGAGCGT
ATCGCCGCGCTCATGAAAAAGATGAACTCTGGGGGCGGAAGCGGCGGAGG
CGGAGGCGGAGGCGGGCCGGGA
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