mRNA_H-elongata_contig180123.4790.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig180123.4790.1
Unique NamemRNA_H-elongata_contig180123.4790.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig180123.4790.1 vs. uniprot
Match: D8LLT5_ECTSI (PIPK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT5_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 9.200e-16
Identity = 32/48 (66.67%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 RSEVKFFQRILPKYYEHHCRNPDTFLVRFCGMYMVKSNWKKIPFLVMK 144
            R+E KFF++ILPKYY HH  +P +FL+RFCGMY+VK+  KKIPF+VMK
Sbjct:  330 RAEAKFFRKILPKYYAHHLAHPGSFLIRFCGMYLVKNGHKKIPFIVMK 377
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BLAST of mRNA_H-elongata_contig180123.4790.1 vs. uniprot
Match: A0A6H5KVE7_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVE7_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.720e-15
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 RSEVKFFQRILPKYYEHHCRNPDTFLVRFCGMYMVKSNWKKIPFLVMK 144
            R+E KF ++ILPKYY HH  +P +FL+RFCGMY+VK+  KKIPF+VMK
Sbjct:   74 RAEAKFLRKILPKYYAHHLAHPGSFLIRFCGMYLVKNGHKKIPFIVMK 121
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BLAST of mRNA_H-elongata_contig180123.4790.1 vs. uniprot
Match: A0A6H5JMY7_9PHAE (PIPK domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMY7_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 8.080e-15
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 RSEVKFFQRILPKYYEHHCRNPDTFLVRFCGMYMVKSNWKKIPFLVMK 144
            R+E KFF+ ILP+YYEHH  +PD+ L+RFCGMY+VK   +KIPF+VMK
Sbjct:  212 RAEAKFFRSILPQYYEHHRTHPDSVLIRFCGMYLVKKGHRKIPFIVMK 259
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BLAST of mRNA_H-elongata_contig180123.4790.1 vs. uniprot
Match: A0A836CAN4_9STRA (PIPK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN4_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.790e-10
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 RSEVKFFQRILPKYYEHHCRNPDTFLVRFCGMYMVKSNW--KKIPFLVM 141
            ++E +F +RILP YYEH  R+PDTFLVRFCGMY VK +   +K+ F+VM
Sbjct:  508 KAETRFLRRILPHYYEHIRRHPDTFLVRFCGMYRVKMHHINRKVHFMVM 556
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BLAST of mRNA_H-elongata_contig180123.4790.1 vs. uniprot
Match: A0A0A9X3P1_LYGHE (Phosphatidylinositol 4-phosphate 5-kinase 9 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9X3P1_LYGHE)

HSP 1 Score: 58.5 bits (140), Expect = 8.660e-10
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 RSEVKFFQRILPKYYEHHCRNPDTFLVRFCGMYMVKSNWKKIP-FLVM 141
            R E KF ++ILP YY+H  RNP+T L RFCGMY VKS+ +K   FLVM
Sbjct:   57 RPECKFLRKILPIYYKHVLRNPNTLLSRFCGMYRVKSSGQKARHFLVM 104
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BLAST of mRNA_H-elongata_contig180123.4790.1 vs. uniprot
Match: D8LKC9_ECTSI (PIPK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKC9_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.950e-8
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    4 SEVKFFQRILPKYYEHHCRNPDTFLVRFCGMYMVKSNW--KKIPFLVM 141
            SE KF +RILP YYEH   +P+TFLVRF GMY VK +   KK+ F+VM
Sbjct:  585 SETKFLRRILPHYYEHVKVHPETFLVRFYGMYRVKMHHLNKKVHFIVM 632
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BLAST of mRNA_H-elongata_contig180123.4790.1 vs. uniprot
Match: A0A6H5KUU1_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU1_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.950e-8
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    4 SEVKFFQRILPKYYEHHCRNPDTFLVRFCGMYMVKSNW--KKIPFLVM 141
            SE KF +RILP YYEH   +P+TFLVRF GMY VK +   KK+ F+VM
Sbjct:  860 SETKFLRRILPHYYEHVKVHPETFLVRFYGMYRVKMHHLNKKVHFIVM 907
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BLAST of mRNA_H-elongata_contig180123.4790.1 vs. uniprot
Match: A0A163ERE0_PHYB8 (PIPK domain-containing protein (Fragment) n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A163ERE0_PHYB8)

HSP 1 Score: 52.4 bits (124), Expect = 1.550e-6
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    4 SEVKFFQRILPKYYEHHCRNPDTFLVRFCGMYMVK-SNWKKIPFLVM 141
            +E KF +++L KYY+H C NP+T L RF G+Y +K  + +KI F+VM
Sbjct:  134 TEHKFMRKVLGKYYQHVCENPNTLLCRFYGLYRIKLPHGRKIHFVVM 180
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BLAST of mRNA_H-elongata_contig180123.4790.1 vs. uniprot
Match: A0A8H7EQ00_9FUNG (Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EQ00_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 7.470e-6
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    4 SEVKFFQRILPKYYEHHCRNPDTFLVRFCGMYMVK-SNWKKIPFLVM 141
            +E KF ++IL KYY+H C NP+T L RF G++ +K    +KI F+VM
Sbjct:  263 TEHKFLRKILAKYYQHVCENPNTLLCRFYGLHRIKLPRSRKIHFVVM 309
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BLAST of mRNA_H-elongata_contig180123.4790.1 vs. uniprot
Match: UPI000644E19C (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E19C)

HSP 1 Score: 50.4 bits (119), Expect = 7.490e-6
Identity = 22/49 (44.90%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 RSEVKFFQRILPKYYEHHCRNPDTFLVRFCGMYMVK-SNWKKIPFLVMK 144
            + E K  + +LP+YYEH  RNP++ L+RF G++ VK +N + + F+VMK
Sbjct:  444 KREAKLLRSLLPEYYEHMKRNPNSLLIRFFGLHRVKPANGRHVRFVVMK 492
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180123.4790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LLT5_ECTSI9.200e-1666.67PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KVE7_9PHAE4.720e-1564.58PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JMY7_9PHAE8.080e-1564.58PIPK domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CAN4_9STRA1.790e-1059.18PIPK domain-containing protein n=1 Tax=Tribonema m... [more]
A0A0A9X3P1_LYGHE8.660e-1060.42Phosphatidylinositol 4-phosphate 5-kinase 9 (Fragm... [more]
D8LKC9_ECTSI1.950e-860.42PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KUU1_9PHAE1.950e-860.42PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A163ERE0_PHYB81.550e-648.94PIPK domain-containing protein (Fragment) n=1 Tax=... [more]
A0A8H7EQ00_9FUNG7.470e-648.94Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=... [more]
UPI000644E19C7.490e-644.90hypothetical protein n=1 Tax=Acytostelium subglobo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180123contigH-elongata_contig180123:715..864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue9.4e-13
Seed eggNOG ortholog2880.D8LLT5
KEGG rclassRC00002,RC00078
KEGG koko:K00889
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG ModuleM00130
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
EC2.7.1.68
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930038.7397401-CDS-H-elongata_contig180123:714..8641622930038.7397401-CDS-H-elongata_contig180123:714..864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180123 715..864 +
1691679257.121515-CDS-H-elongata_contig180123:714..8641691679257.121515-CDS-H-elongata_contig180123:714..864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180123 715..864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180123.4790.1prot_H-elongata_contig180123.4790.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig180123 715..864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig180123.4790.1

>prot_H-elongata_contig180123.4790.1 ID=prot_H-elongata_contig180123.4790.1|Name=mRNA_H-elongata_contig180123.4790.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
RSEVKFFQRILPKYYEHHCRNPDTFLVRFCGMYMVKSNWKKIPFLVMKW*
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mRNA from alignment at H-elongata_contig180123:715..864+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig180123.4790.1 ID=mRNA_H-elongata_contig180123.4790.1|Name=mRNA_H-elongata_contig180123.4790.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig180123:715..864+ (Himanthalia elongata Himel1 dioecious)
AGGTCGGAAGTGAAGTTTTTTCAGCGAATCCTTCCCAAGTACTACGAGCA
CCACTGCCGGAACCCGGATACGTTCCTGGTCCGCTTCTGTGGCATGTATA
TGGTCAAGAGCAATTGGAAGAAGATCCCGTTCCTCGTTATGAAGTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig180123:715..864+

>mRNA_H-elongata_contig180123.4790.1 ID=mRNA_H-elongata_contig180123.4790.1|Name=mRNA_H-elongata_contig180123.4790.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig180123:715..864+ (Himanthalia elongata Himel1 dioecious)
AGGTCGGAAGTGAAGTTTTTTCAGCGAATCCTTCCCAAGTACTACGAGCA
CCACTGCCGGAACCCGGATACGTTCCTGGTCCGCTTCTGTGGCATGTATA
TGGTCAAGAGCAATTGGAAGAAGATCCCGTTCCTCGTTATGAAGTGGTGA
AGGTCGGAAGTGAAGTTTTTTCAGCGAATCCTTCCCAAGTACTACGAGCA
CCACTGCCGGAACCCGGATACGTTCCTGGTCCGCTTCTGTGGCATGTATA
TGGTCAAGAGCAATTGGAAGAAGATCCCGTTCCTCGTTATGAAGTGGTGA
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