mRNA_H-elongata_contig180.4787.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig180.4787.1
Unique NamemRNA_H-elongata_contig180.4787.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig180.4787.1 vs. uniprot
Match: UPI0020050142 (leucine-rich repeat serine/threonine-protein kinase 1 n=1 Tax=Hyalella azteca TaxID=294128 RepID=UPI0020050142)

HSP 1 Score: 79.0 bits (193), Expect = 4.010e-15
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:    1 LQSVGVSIQDYKFQNELKVHTE-----VKFYDLAGEAEYYGLHQFFLTERALYVVVWDAFKFMDKKKKLLDHLKEWLVTLHLRAPRSTVLFCGTHKD 276
            + +VGV I D+ ++ +++ H+       + +D  G+ EYY  HQ+FL++R+LY+VVW   K  D ++ + DH+ +WLV +  RAP S VL  GTH D
Sbjct: 1201 MSTVGVDIGDWTYEKKVRGHSSHGPVVFRTWDFGGQQEYYATHQYFLSKRSLYLVVW---KITDGERAI-DHILQWLVNIQARAPNSAVLIVGTHYD 1293
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BLAST of mRNA_H-elongata_contig180.4787.1 vs. uniprot
Match: A0A8B7NQ31_HYAAZ (Non-specific serine/threonine protein kinase n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7NQ31_HYAAZ)

HSP 1 Score: 79.0 bits (193), Expect = 4.010e-15
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:    1 LQSVGVSIQDYKFQNELKVHTE-----VKFYDLAGEAEYYGLHQFFLTERALYVVVWDAFKFMDKKKKLLDHLKEWLVTLHLRAPRSTVLFCGTHKD 276
            + +VGV I D+ ++ +++ H+       + +D  G+ EYY  HQ+FL++R+LY+VVW   K  D ++ + DH+ +WLV +  RAP S VL  GTH D
Sbjct: 1237 MSTVGVDIGDWTYEKKVRGHSSHGPVVFRTWDFGGQQEYYATHQYFLSKRSLYLVVW---KITDGERAI-DHILQWLVNIQARAPNSAVLIVGTHYD 1329
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BLAST of mRNA_H-elongata_contig180.4787.1 vs. uniprot
Match: E9GPX3_DAPPU (Uncharacterized protein n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9GPX3_DAPPU)

HSP 1 Score: 78.2 bits (191), Expect = 7.400e-15
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:    1 LQSVGVSIQDYKFQNELKVHTEVKF--YDLAGEAEYYGLHQFFLTERALYVVVWDAFKFMDKKKKLLDHLKEWLVTLHLRAPRSTVLFCGTHKD 276
            L +VGV I D+ ++ ++K H  V F  +D AG+ EYY  HQ+FL++R+LY+V+W   +  D  K + D +  WLV +  RAP S VL  GTH D
Sbjct:  637 LSTVGVDIGDWTYEKKVKGHGPVTFRTWDFAGQKEYYATHQYFLSKRSLYLVLW---RITDGVKGI-DEIFHWLVNIQARAPNSPVLIVGTHFD 726
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BLAST of mRNA_H-elongata_contig180.4787.1 vs. uniprot
Match: E9HDV7_DAPPU (Non-specific serine/threonine protein kinase n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9HDV7_DAPPU)

HSP 1 Score: 78.2 bits (191), Expect = 7.430e-15
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:    1 LQSVGVSIQDYKFQNELKVHTEVKF--YDLAGEAEYYGLHQFFLTERALYVVVWDAFKFMDKKKKLLDHLKEWLVTLHLRAPRSTVLFCGTHKD 276
            L +VGV I D+ ++ ++K H  V F  +D AG+ EYY  HQ+FL++R+LY+V+W   +  D  K + D +  WLV +  RAP S VL  GTH D
Sbjct: 1054 LSTVGVDIGDWTYEKKVKGHGPVTFRTWDFAGQKEYYATHQYFLSKRSLYLVLW---RITDGVKGI-DEIFHWLVNIQARAPNSPVLIVGTHFD 1143
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BLAST of mRNA_H-elongata_contig180.4787.1 vs. uniprot
Match: A0A8J2RLG8_9CRUS (Non-specific serine/threonine protein kinase n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2RLG8_9CRUS)

HSP 1 Score: 77.4 bits (189), Expect = 1.390e-14
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:    1 LQSVGVSIQDYKFQNELKVHTEVKF--YDLAGEAEYYGLHQFFLTERALYVVVWDAFKFMDKKKKLLDHLKEWLVTLHLRAPRSTVLFCGTHKD 276
            L +VGV I D+ +  ++K H  V F  +D AG+ EYY  HQ+FL++R+LY+V+W   +  D  K + D +  WLV +  RAP S VL  GTH D
Sbjct: 1130 LSTVGVDIGDWTYDKKVKGHGPVTFRTWDFAGQKEYYATHQYFLSKRSLYLVLW---RITDGVKGI-DEIFHWLVNIQARAPNSPVLIVGTHFD 1219
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BLAST of mRNA_H-elongata_contig180.4787.1 vs. uniprot
Match: A0A164KNT3_9CRUS (Non-specific serine/threonine protein kinase n=12 Tax=Daphnia TaxID=6668 RepID=A0A164KNT3_9CRUS)

HSP 1 Score: 77.0 bits (188), Expect = 1.900e-14
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:    1 LQSVGVSIQDYKFQNELKVHTEVKF--YDLAGEAEYYGLHQFFLTERALYVVVWDAFKFMDKKKKLLDHLKEWLVTLHLRAPRSTVLFCGTHKD 276
            L +VGV I D+ +  + K H  V F  +D AG+ EYY  HQ+FL++R+LY+V+W   +  D  K + D +  WLV +  RAP S VL  GTH D
Sbjct: 1104 LSTVGVDIGDWTYDKKAKGHGPVTFRTWDFAGQKEYYATHQYFLSKRSLYLVLW---RITDGVKGI-DEIFHWLVNIQARAPNSPVLIVGTHYD 1193
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BLAST of mRNA_H-elongata_contig180.4787.1 vs. uniprot
Match: A0A6A7FVB2_9CRUS (Non-specific serine/threonine protein kinase n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FVB2_9CRUS)

HSP 1 Score: 76.3 bits (186), Expect = 3.560e-14
Identity = 38/97 (39.18%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:    1 LQSVGVSIQDYKFQNELKVHTE-----VKFYDLAGEAEYYGLHQFFLTERALYVVVWDAFKFMDKKKKLLDHLKEWLVTLHLRAPRSTVLFCGTHKD 276
            + +VGV I D+ ++ +++ H+       + +D  G+ EYY  HQ+FL++R+LY+VVW   K  D +K + D + +WLV +  RAP S VL  GTH D
Sbjct: 1286 MSTVGVDIGDWTYEKKVRGHSSHGPVIFRTWDFGGQKEYYATHQYFLSKRSLYLVVW---KITDGEKAI-DDILQWLVNIQARAPNSPVLILGTHYD 1378
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BLAST of mRNA_H-elongata_contig180.4787.1 vs. uniprot
Match: A0A8J4XPZ7_CHIOP (Non-specific serine/threonine protein kinase n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J4XPZ7_CHIOP)

HSP 1 Score: 75.9 bits (185), Expect = 4.840e-14
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:    1 LQSVGVSIQDYKFQNELKVHTEV-----KFYDLAGEAEYYGLHQFFLTERALYVVVWDAFKFMDKKKKLLDHLKEWLVTLHLRAPRSTVLFCGTHKD 276
            + +VGV I D+ F+ +++ H+       + +D  G+ EYY  HQ+FL++R+LY+VVW   K  D ++ + D L +WLV +  RAP S VL  GTH D
Sbjct: 1098 MSTVGVDIGDWIFEKKIRGHSNYGPVVFRTWDFGGQKEYYATHQYFLSKRSLYLVVW---KISDGERGVAD-LLQWLVNIQARAPNSPVLIVGTHYD 1190
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BLAST of mRNA_H-elongata_contig180.4787.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 6.440e-14
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:    7 SVGVSIQDYKFQNELKVHTEVKFYDLAGEAEYYGLHQFFLTERALYVVVWDAFKFMDKKKKLLDH-----LKEWLVTLHLRAPRSTVLFCGTHKD 276
            +VG+ +  +  Q      T V+FYD AG+ +YYG+HQ FLT RALY++VWD  +   K    LD      +  WL  LHLRAP STV+      D
Sbjct:  260 TVGIELLRHNLQG-----TAVEFYDCAGQVDYYGMHQNFLTRRALYLLVWDVLRCHGKTDDDLDEVIFQDIMRWLYVLHLRAPGSTVILVANKCD 349
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BLAST of mRNA_H-elongata_contig180.4787.1 vs. uniprot
Match: A0A267E8A3_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267E8A3_9PLAT)

HSP 1 Score: 75.1 bits (183), Expect = 8.950e-14
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:    1 LQSVGVSIQDYKFQNELKVHTEVKF--YDLAGEAEYYGLHQFFLTERALYVVVWDAFKFMDKKKKLLDHLKEWLVTLHLRAPRSTVLFCGTHKD 276
            L +VGV I D   + +     E+ F  +D  G+ EYY  HQ+FL++RA+Y+VVWD    +    + ++ + +WLV +H RAPRS+V+  GTH D
Sbjct:   47 LSTVGVDIGDLVMRRKGHRIEEIVFRTWDFGGQKEYYATHQYFLSKRAIYLVVWD----LRTGDRGMESVHQWLVNIHSRAPRSSVIIVGTHLD 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180.4787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00200501424.010e-1539.18leucine-rich repeat serine/threonine-protein kinas... [more]
A0A8B7NQ31_HYAAZ4.010e-1539.18Non-specific serine/threonine protein kinase n=1 T... [more]
E9GPX3_DAPPU7.400e-1543.62Uncharacterized protein n=1 Tax=Daphnia pulex TaxI... [more]
E9HDV7_DAPPU7.430e-1543.62Non-specific serine/threonine protein kinase n=1 T... [more]
A0A8J2RLG8_9CRUS1.390e-1443.62Non-specific serine/threonine protein kinase n=1 T... [more]
A0A164KNT3_9CRUS1.900e-1443.62Non-specific serine/threonine protein kinase n=12 ... [more]
A0A6A7FVB2_9CRUS3.560e-1439.18Non-specific serine/threonine protein kinase n=2 T... [more]
A0A8J4XPZ7_CHIOP4.840e-1440.21Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6H5JW02_9PHAE6.440e-1442.11Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A267E8A3_9PLAT8.950e-1440.43Uncharacterized protein n=1 Tax=Macrostomum lignan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180contigH-elongata_contig180:23632..24504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score80.1
Seed ortholog evalue5.9e-13
Seed eggNOG ortholog6669.EFX70095
KEGG koko:K14304
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0000323,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005795,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006914,GO:0006928,GO:0006950,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007528,GO:0008088,GO:0008150,GO:0008152,GO:0009056,GO:0009267,GO:0009605,GO:0009894,GO:0009987,GO:0009991,GO:0010008,GO:0010506,GO:0010721,GO:0010769,GO:0010771,GO:0010941,GO:0010970,GO:0010975,GO:0010977,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016197,GO:0016241,GO:0016301,GO:0016310,GO:0016482,GO:0016740,GO:0016772,GO:0016773,GO:0017016,GO:0017137,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0023052,GO:0030100,GO:0030154,GO:0030424,GO:0030425,GO:0030705,GO:0031090,GO:0031267,GO:0031323,GO:0031329,GO:0031344,GO:0031345,GO:0031410,GO:0031594,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0031984,GO:0032418,GO:0032501,GO:0032502,GO:0032879,GO:0032886,GO:0033043,GO:0033267,GO:0033554,GO:0035556,GO:0036211,GO:0036465,GO:0036477,GO:0040011,GO:0042147,GO:0042594,GO:0042995,GO:0043005,GO:0043170,GO:0043195,GO:0043198,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043679,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046907,GO:0048311,GO:0048312,GO:0048488,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050808,GO:0050896,GO:0051020,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051493,GO:0051640,GO:0051641,GO:0051645,GO:0051646,GO:0051649,GO:0051656,GO:0051683,GO:0051716,GO:0051960,GO:0051961,GO:0060284,GO:0060341,GO:0060548,GO:0060627,GO:0061174,GO:0061845,GO:0061919,GO:0065007,GO:0065008,GO:0070507,GO:0071212,GO:0071496,GO:0071704,GO:0071840,GO:0090128,GO:0097447,GO:0097458,GO:0097708,GO:0098588,GO:0098657,GO:0098693,GO:0098791,GO:0098793,GO:0098805,GO:0098852,GO:0099003,GO:0099111,GO:0099174,GO:0099504,GO:0120025,GO:0120035,GO:0120038,GO:0140096,GO:0150034,GO:1900242,GO:1901214,GO:1901215,GO:1901564,GO:1902115,GO:1903421,GO:1990033,GO:2000026,GO:2000171,GO:2000331,GO:2000785
EggNOG free text desc.binding. It is involved in the biological process described with protein phosphorylation
EggNOG OGs38CNK@33154,3BD5Q@33208,3CU36@33213,41Y4I@6656,COG0515@1,COG0666@1,COG4886@1,KOG0192@2759,KOG0504@2759,KOG0619@2759
COG Functional cat.T
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930038.4793293-CDS-H-elongata_contig180:23631..238171622930038.4793293-CDS-H-elongata_contig180:23631..23817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180 23632..23817 +
1691679257.0504432-CDS-H-elongata_contig180:23631..238171691679257.0504432-CDS-H-elongata_contig180:23631..23817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180 23632..23817 +
1622930038.4923096-CDS-H-elongata_contig180:24414..245041622930038.4923096-CDS-H-elongata_contig180:24414..24504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180 24415..24504 +
1691679257.0649347-CDS-H-elongata_contig180:24414..245041691679257.0649347-CDS-H-elongata_contig180:24414..24504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180 24415..24504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180.4787.1prot_H-elongata_contig180.4787.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig180 23632..24504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig180.4787.1

>prot_H-elongata_contig180.4787.1 ID=prot_H-elongata_contig180.4787.1|Name=mRNA_H-elongata_contig180.4787.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
LQSVGVSIQDYKFQNELKVHTEVKFYDLAGEAEYYGLHQFFLTERALYVV
VWDAFKFMDKKKKLLDHLKEWLVTLHLRAPRSTVLFCGTHKD
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mRNA from alignment at H-elongata_contig180:23632..24504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig180.4787.1 ID=mRNA_H-elongata_contig180.4787.1|Name=mRNA_H-elongata_contig180.4787.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=873bp|location=Sequence derived from alignment at H-elongata_contig180:23632..24504+ (Himanthalia elongata Himel1 dioecious)
CTCCAATCTGTGGGAGTGTCAATTCAGGATTACAAGTTTCAGAATGAGCT
TAAGGTTCACACCGAAGTGAAGTTCTACGACCTGGCAGGGGAAGCTGAAT
ACTACGGCCTGCATCAATTTTTCCTAACAGAAAGAGCTTTGTACGTCGTG
GTGTGGGATGCTTTCAAGTTTATGGACAAGAAAAAGGTGACGTACTTCAC
TCTCACCCCAGGAATGAATTCGATGCCTGATGATAAGCTCTATTTATTTT
ATTTGACACATCTAGAGTTTTTAGCAGCATTTCTGTCCGCATTCATGCTT
GGTTTTAGGATAACAACCGAAGCATATCATTTTCCGACTAAGGCATTTAA
GCTCCACTACTCCTACGTTTGACGTTTCGGGGTATCATAGTTCGTTTTTG
CGCGTCTCACGGTAGCGTCAGTCTTAGGGTAAAAATGCCTTTAATCCGAC
CAACGATAGCACTGTTGTGTTTGTCAAATAACGCGTTTGGGTACGTACGT
CTCCTGTGTGTCGCGCTACTTGTAATGAGGTGGAAATCAAAACTCGTTTT
CCCATCTCGTAGGGTATATTGGCCATTCAACATTCTTATGTTGCAGCTCC
TCATTTGTGAAATCCTTCACAAGCTTGACACCTAAGCATAGACTCGCGAG
GTAAAAGTCAAAGCGCACTTATAAAGTTATTTTGATATAATGAAAATCCT
TGAACTATGTACTTCATTATTTTCTTCTTCGTTCCCTACGTCACCTTACG
ATCATCACATCACCTTGTCGTGCCTGCGTTGAGAAGCTTCTGGATCATCT
GAAGGAGTGGCTGGTAACGCTGCACCTCAGGGCTCCTCGCTCAACCGTTC
TATTTTGCGGTACACATAAAGAT
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Coding sequence (CDS) from alignment at H-elongata_contig180:23632..24504+

>mRNA_H-elongata_contig180.4787.1 ID=mRNA_H-elongata_contig180.4787.1|Name=mRNA_H-elongata_contig180.4787.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig180:23632..24504+ (Himanthalia elongata Himel1 dioecious)
CTCCAATCTGTGGGAGTGTCAATTCAGGATTACAAGTTTCAGAATGAGCT
TAAGGTTCACACCGAAGTGAAGTTCTACGACCTGGCAGGGGAAGCTGAAT
ACTACGGCCTGCATCAATTTTTCCTAACAGAAAGAGCTTTGTACGTCGTG
GTGTGGGATGCTTTCAAGTTTATGGACAAGAAAAAGCTCCAATCTGTGGG
AGTGTCAATTCAGGATTACAAGTTTCAGAATGAGCTTAAGGTTCACACCG
AAGTGAAGTTCTACGACCTGGCAGGGGAAGCTGAATACTACGGCCTGCAT
CAATTTTTCCTAACAGAAAGAGCTTTGTACGTCGTGGTGTGGGATGCTTT
CAAGTTTATGGACAAGAAAAAGAAGCTTCTGGATCATCTGAAGGAGTGGC
TGGTAACGCTGCACCTCAGGGCTCCTCGCTCAACCGTTCTATTTTGCGGT
ACACATAAAGATAAGCTTCTGGATCATCTGAAGGAGTGGCTGGTAACGCT
GCACCTCAGGGCTCCTCGCTCAACCGTTCTATTTTGCGGTACACATAAAG
AT
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