mRNA_H-elongata_contig17997.4785.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17997.4785.1
Unique NamemRNA_H-elongata_contig17997.4785.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17997.4785.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 8.840e-24
Identity = 51/98 (52.04%), Postives = 64/98 (65.31%), Query Frame = 2 
Query:    8 YVCGSDGFMCIDPGPLNDTACEEVQPP---PCPVAAKRNWVVETTTQVGALAETINCSDGSFEVEWRGSIIVDTEIVVVDGTFLNITGGGNFSAVLDG 292
            + CG  GF C+DP   +   CEE  PP   PC   A++ WVVE + Q  ALA  +NCS GSF+VEWRGS+ +D  I +V GT LN+TGGG  SAV+DG
Sbjct:   95 FSCGIAGFSCLDPSATDLYDCEE--PPAATPCSAEAQQAWVVEDSAQAQALAANVNCSGGSFQVEWRGSVSLDAPIFIVHGTDLNVTGGGEASAVIDG 190
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BLAST of mRNA_H-elongata_contig17997.4785.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.240e-23
Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 2 
Query:    2 KEYVCGSDGFMCIDPGPLNDTACEEVQPP-PCPVAAKRNWVVETTTQVGALAETINCSDGSFEVEWRGSIIVDTEIVVVDGTFLNITGGGNFSAVLDG 292
             +Y CG  GF C+DP   +   C E     PC   A+  WVVE + Q  ALA  +NCS GSF+VEWRGS+ +D  I +V GT LN+TGGG  SAV+DG
Sbjct: 2006 SQYECGIQGFSCLDPSATDLYDCGETPAATPCSAEAQEAWVVEDSAQAQALAANVNCSGGSFQVEWRGSVSLDAPIFIVHGTDLNVTGGGEASAVIDG 2103
[Close]
BLAST of mRNA_H-elongata_contig17997.4785.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 9.300e-22
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 2 
Query:    2 KEYVCGSDGFMCIDPGPLNDTACEEVQPP---PCPVAAKRNWVVETTTQVGALAETINCSDGSFEVEWRGSIIVDTEIVVVDGTFLNITGGGNFSAVLDG 292
             ++ CG  GF C+DP       CEE  PP   PC + A++ WVVE + Q  A+A  +NCS  SF+V+WRGS+ +D  I ++ GT LN+TGGG  SAV+DG
Sbjct:  103 SDFECGIAGFSCLDPSATELYDCEE--PPTGSPCSLEAQQAWVVEDSAQAQAVAANVNCSGESFQVKWRGSVSLDAPIFIMHGTDLNVTGGGEASAVIDG 200
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BLAST of mRNA_H-elongata_contig17997.4785.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.090e-18
Identity = 45/97 (46.39%), Postives = 62/97 (63.92%), Query Frame = 2 
Query:   11 VCGSDGFMCIDPGPLNDTACEEVQPP---PCPVAAKRNWVVETTTQVGALAETINCSDGSFEVEWRGSIIVDTEIVVVDGTFLNITGGGNFSAVLDG 292
            +C S  F C+DP   ++    E  PP   PC    ++ WVV+ + Q  ALA  +NCS GSFEVEWRG+++V++   VVDGT L+ITG G+ SA +DG
Sbjct:  114 LCQSVTFDCLDPDADDEFYECEAAPPTALPCSAEVQQTWVVDDSAQAQALASAVNCSGGSFEVEWRGTVVVESVFYVVDGTTLSITGDGS-SAAIDG 209
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BLAST of mRNA_H-elongata_contig17997.4785.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 7.820e-18
Identity = 45/96 (46.88%), Postives = 62/96 (64.58%), Query Frame = 2 
Query:   14 CGSDGFMCIDPGPLNDT-ACEEVQPP--PCPVAAKRNWVVETTTQVGALAETINCSDGSFEVEWRGSIIVDTEIVVVDGTFLNITGGGNFSAVLDG 292
            C S  F C+DPG  N    C+E  P   PC    +++WVV  + +  ALA  +NCS GSFEVEWRGS++V++ I V DGT + +TG G+ +AV+DG
Sbjct:   10 CYSSLFDCLDPGSSNGFYECQEPPPATLPCSAEVQQSWVVADSAEALALAAAVNCSGGSFEVEWRGSVVVESPIYVRDGTIVTVTGVGS-TAVIDG 104
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BLAST of mRNA_H-elongata_contig17997.4785.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 3.300e-16
Identity = 46/101 (45.54%), Postives = 57/101 (56.44%), Query Frame = 2 
Query:   14 CGSDG-----FMCIDPG-PLNDTACEE--VQPPPCPVAAKRNWVVETTTQVGALAETINCSDGSFEVEWRGSIIVDTEIVVVDGTFLNITGGGNFSAVLDG 292
            CG DG       C+DP  P     CE   +   PCP  ++ NWVV  + Q  ALA  +NCS GSFEVEW G+++V+  I V DGT L ITG    +A LDG
Sbjct:  183 CGYDGGDGGELDCVDPSAPEELYECEAPPITTTPCPADSEWNWVVGDSEQALALALAVNCSGGSFEVEWVGTVVVNETIFVTDGTVLTITGAAGSNAALDG 283
[Close]
BLAST of mRNA_H-elongata_contig17997.4785.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 7.000e-12
Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 2 
Query:   11 VCGSDGFMC------IDPGPLNDTACEEVQPP-----PCPVAAKRNWVVETTTQVGALAETINCSDGSFEVEWRGSIIVDTEIVVVDGTFLNITGGGN 271
            +C   G +C      +DP   ++    E  PP     PC    ++ WVV+   +  ALA  +NCS GSFEVEW G+++++  IVV  GT L ITG G+
Sbjct:  257 ICSCSGTLCGGLADCLDPSAGDEFY--ECSPPSPEALPCSAEVQQTWVVDEQEEAHALAAAVNCSGGSFEVEWSGTVVMEMPIVVGAGTVLTITGAGS 352
[Close]
BLAST of mRNA_H-elongata_contig17997.4785.1 vs. uniprot
Match: D7FV90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV90_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 3.310e-11
Identity = 37/86 (43.02%), Postives = 47/86 (54.65%), Query Frame = 2 
Query:    5 EYVCGSDGFMCIDPGPLNDTACEEVQPPPCPVAAKRNWVVETTTQVGALAETINCSDGSFEVEWRGSIIVDTEIVVVDGTFLNITG 262
            +Y+C    F C+DP   N T C       C     R W+VE T     LA  INC+ G+F+VEWRGS+IV   + V  GT +NITG
Sbjct:  192 QYMC-LGRFDCLDPS-FNTTECV-TNTTACSPDLSREWLVEDTADAIELANAINCTGGTFDVEWRGSVIVPQTLWVSQGTTVNITG 274
[Close]
BLAST of mRNA_H-elongata_contig17997.4785.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.150e-10
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = 2 
Query:   35 CIDPGPLNDT-ACEEVQPP--PCPVAAKRNWVVETTTQVGALAETINCSDGSFEVEWRGSIIVDTEIVVVDGTFLNITG 262
            C+DP   ++   C +  P   PC +  ++ WV++   Q  ALA  +NCS GSF+VEWRG+++++  IV+  GT L I+G
Sbjct:   31 CLDPSAGDEFYECSQPSPEALPCSLEVQQTWVLDEQEQAHALAAAVNCSGGSFQVEWRGTVVMEIPIVIGAGTVLTISG 109
[Close]
BLAST of mRNA_H-elongata_contig17997.4785.1 vs. uniprot
Match: A0A6H5JLP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP6_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.560e-10
Identity = 37/90 (41.11%), Postives = 48/90 (53.33%), Query Frame = 2 
Query:   29 FMCIDPGPLNDTACEEVQPPPCPVAAKRNWVVETTTQVGALAETINCSDGSFEVEWRGSIIVDTEIVVVDGTFLNITGGGNFS--AVLDG 292
            F C+DP   N T C       C     R W+VE T     LA  INC+ G+F+VEWRGS++V   + +  GT +NITG    +  AV DG
Sbjct:   93 FDCLDPS-FNTTECV-TNTTACAPDLSREWLVENTADAIELANAINCTGGTFDVEWRGSVLVPQTLWISQGTTVNITGVATTASPAVADG 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17997.4785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FHH1_ECTSI8.840e-2452.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHG7_ECTSI1.240e-2350.00LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KR67_9PHAE9.300e-2247.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0E9_9PHAE3.090e-1846.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FTL7_ECTSI7.820e-1846.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LSC0_ECTSI3.300e-1645.54Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7FTI5_ECTSI7.000e-1237.76Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FV90_ECTSI3.310e-1143.02Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5K1P8_9PHAE1.150e-1039.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLP6_9PHAE1.560e-1041.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17997contigH-elongata_contig17997:1528..1828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue5.1e-17
Seed eggNOG ortholog2880.D7FHH1
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size270
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930038.287414-UTR-H-elongata_contig17997:1527..15581622930038.287414-UTR-H-elongata_contig17997:1527..1558Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17997 1528..1558 +
1691679256.9493895-UTR-H-elongata_contig17997:1527..15581691679256.9493895-UTR-H-elongata_contig17997:1527..1558Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17997 1528..1558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930038.305425-CDS-H-elongata_contig17997:1558..18281622930038.305425-CDS-H-elongata_contig17997:1558..1828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17997 1559..1828 +
1691679256.9600813-CDS-H-elongata_contig17997:1558..18281691679256.9600813-CDS-H-elongata_contig17997:1558..1828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17997 1559..1828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17997.4785.1prot_H-elongata_contig17997.4785.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17997 1559..1828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17997.4785.1

>prot_H-elongata_contig17997.4785.1 ID=prot_H-elongata_contig17997.4785.1|Name=mRNA_H-elongata_contig17997.4785.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
MCIDPGPLNDTACEEVQPPPCPVAAKRNWVVETTTQVGALAETINCSDGS
FEVEWRGSIIVDTEIVVVDGTFLNITGGGNFSAVLDGENR
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mRNA from alignment at H-elongata_contig17997:1528..1828+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17997.4785.1 ID=mRNA_H-elongata_contig17997.4785.1|Name=mRNA_H-elongata_contig17997.4785.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=301bp|location=Sequence derived from alignment at H-elongata_contig17997:1528..1828+ (Himanthalia elongata Himel1 dioecious)
CAAAGAATATGTCTGTGGTTCTGATGGTTTCATGTGTATCGATCCCGGCC
CACTCAATGATACTGCTTGCGAGGAAGTTCAGCCACCCCCTTGCCCGGTG
GCTGCCAAGCGCAACTGGGTGGTTGAAACTACTACACAGGTGGGGGCCTT
GGCCGAAACTATTAACTGTTCGGATGGAAGTTTCGAAGTGGAATGGAGAG
GCAGCATCATCGTAGACACCGAGATCGTGGTCGTCGACGGAACATTCCTT
AATATAACCGGTGGAGGGAATTTCAGCGCAGTCTTAGACGGAGAAAACAG
G
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Coding sequence (CDS) from alignment at H-elongata_contig17997:1528..1828+

>mRNA_H-elongata_contig17997.4785.1 ID=mRNA_H-elongata_contig17997.4785.1|Name=mRNA_H-elongata_contig17997.4785.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig17997:1528..1828+ (Himanthalia elongata Himel1 dioecious)
ATGTGTATCGATCCCGGCCCACTCAATGATACTGCTTGCGAGGAAGTTCA
GCCACCCCCTTGCCCGGTGGCTGCCAAGCGCAACTGGGTGGTTGAAACTA
CTACACAGGTGGGGGCCTTGGCCGAAACTATTAACTGTTCGGATGGAAGT
TTCGAAGTGGAATGGAGAGGCAGCATCATCGTAGACACCGAGATCGTGGT
CGTCGACGGAACATTCCTTAATATAACCGGTGGAGGGAATTTCAGCGCAG
TCTTAGACGGAGAAAACAGGATGTGTATCGATCCCGGCCCACTCAATGAT
ACTGCTTGCGAGGAAGTTCAGCCACCCCCTTGCCCGGTGGCTGCCAAGCG
CAACTGGGTGGTTGAAACTACTACACAGGTGGGGGCCTTGGCCGAAACTA
TTAACTGTTCGGATGGAAGTTTCGAAGTGGAATGGAGAGGCAGCATCATC
GTAGACACCGAGATCGTGGTCGTCGACGGAACATTCCTTAATATAACCGG
TGGAGGGAATTTCAGCGCAGTCTTAGACGGAGAAAACAGG
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