mRNA_H-elongata_contig179955.4784.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179955.4784.1
Unique NamemRNA_H-elongata_contig179955.4784.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig179955.4784.1 vs. uniprot
Match: A0A6H5KJQ4_9PHAE (EXS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ4_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 4.070e-24
Identity = 53/83 (63.86%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    1 MSICFLVCFVGFYKALRGAM--GSLFREEFAHVFPLVLLVYMAIAFVFPWKERKSLLYVLWTVIISPLGQVRFLEGYVGDILT 243
            +SI FLV F+ FYK LRG +   +    +FAH FPL+LL YM + F+ PW ERK LL VLWT IISP GQVRFLEGYVGDILT
Sbjct:  471 LSIAFLVSFICFYKCLRGVLLNPTWVPIQFAHTFPLLLLFYMLLCFLTPWHERKGLLRVLWTTIISPFGQVRFLEGYVGDILT 553
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BLAST of mRNA_H-elongata_contig179955.4784.1 vs. uniprot
Match: D8LHJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ2_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 4.080e-24
Identity = 53/83 (63.86%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    1 MSICFLVCFVGFYKALRGAM--GSLFREEFAHVFPLVLLVYMAIAFVFPWKERKSLLYVLWTVIISPLGQVRFLEGYVGDILT 243
            +SI FLV F+ FYK LRG +   +    +FAH FPL+LL YM + F+ PW ERK LL VLWT IISP GQVRFLEGYVGDILT
Sbjct:  566 LSIAFLVSFICFYKCLRGVLLNPTWVPIQFAHTFPLLLLFYMLLCFLTPWHERKGLLRVLWTTIISPFGQVRFLEGYVGDILT 648
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BLAST of mRNA_H-elongata_contig179955.4784.1 vs. uniprot
Match: A0A7S3YFX7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFX7_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 1.980e-15
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:   16 LVCFVGFYKALRGAMGSLFREEFAHVFPLVLLVYMAIAFVFPWKERKSLLYVLWTVIISPLGQVRFLEGYVGDILT 243
            +  FV FYKALRG          AH+FPL+LL+YMA   VFPW+ER+S+   ++  + +P  QV F EGYVGD+LT
Sbjct:    1 MASFVCFYKALRGVFLRGVPPAAAHLFPLLLLLYMAQRMVFPWRERRSMWVNIYNTVAAPCAQVHFKEGYVGDVLT 76
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BLAST of mRNA_H-elongata_contig179955.4784.1 vs. uniprot
Match: A0A7S2XUU5_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUU5_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.370e-15
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:    1 MSICFLVCFVGFYKALRGAMGSLFREEFAHVFPLVLLVYMAIAFVFPWKERKSLLYVLWTVIISPLGQVRFLEGYVGDILT 243
            +S  +LVCF+ +YKALRG   +    + AH FP +LL+Y+A    FPW +R+ +   +W  + +P   V F EGY GD+LT
Sbjct:  221 LSTAWLVCFLCYYKALRGCFTNHVPPQLAHAFPFLLLIYIAHRATFPWPKRRGMWVTVWNTVKAPFAPVHFKEGYAGDVLT 301
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BLAST of mRNA_H-elongata_contig179955.4784.1 vs. uniprot
Match: A0A6H5KJN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN6_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.190e-11
Identity = 36/83 (43.37%), Postives = 43/83 (51.81%), Query Frame = 1 
Query:   13 FLVCFVGFYKALRGA------MGSLFREEFAHVFPLVLLVYMAIAFVFPWKERKSLLYVLWTVIISPLGQVRFLEGYVGDILT 243
            FLV  + FYK LRG       M  L++                     PW ER+ LL VLWT IISP G+V+F +GYVGDILT
Sbjct:    3 FLVSLICFYKCLRGVLLNPTWMAILYKRGGKKARKT------------PWHERRGLLRVLWTTIISPFGKVQFFQGYVGDILT 73
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179955.4784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KJQ4_9PHAE4.070e-2463.86EXS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LHJ2_ECTSI4.080e-2463.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3YFX7_HETAK1.980e-1550.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2XUU5_9STRA3.370e-1541.98Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A6H5KJN6_9PHAE4.190e-1143.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179955contigH-elongata_contig179955:121..964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue2.2e-19
Seed eggNOG ortholog2880.D8LHJ2
EggNOG free text desc.phosphate ion transport
EggNOG OGsCOG5409@1,KOG1162@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons2
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930038.220922-CDS-H-elongata_contig179955:120..2551622930038.220922-CDS-H-elongata_contig179955:120..255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179955 121..255 +
1691679256.9278755-CDS-H-elongata_contig179955:120..2551691679256.9278755-CDS-H-elongata_contig179955:120..255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179955 121..255 +
1622930038.2344902-CDS-H-elongata_contig179955:856..9641622930038.2344902-CDS-H-elongata_contig179955:856..964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179955 857..964 +
1691679256.9392433-CDS-H-elongata_contig179955:856..9641691679256.9392433-CDS-H-elongata_contig179955:856..964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179955 857..964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179955.4784.1prot_H-elongata_contig179955.4784.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179955 121..964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179955.4784.1

>prot_H-elongata_contig179955.4784.1 ID=prot_H-elongata_contig179955.4784.1|Name=mRNA_H-elongata_contig179955.4784.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MSICFLVCFVGFYKALRGAMGSLFREEFAHVFPLVLLVYMAIAFVFPWKE
RKSLLYVLWTVIISPLGQVRFLEGYVGDILT
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mRNA from alignment at H-elongata_contig179955:121..964+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179955.4784.1 ID=mRNA_H-elongata_contig179955.4784.1|Name=mRNA_H-elongata_contig179955.4784.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=844bp|location=Sequence derived from alignment at H-elongata_contig179955:121..964+ (Himanthalia elongata Himel1 dioecious)
ATGAGCATCTGTTTCCTGGTGTGCTTCGTAGGCTTCTACAAGGCCCTTCG
CGGTGCCATGGGGAGCCTCTTCCGCGAAGAATTCGCGCACGTTTTTCCGC
TAGTGCTCCTGGTTTACATGGCGATAGCGTTTGTGGTGAGCGCGCGCGCG
AGAGAGAGAGAGAGTATGACAGAGGAAGAGGGAAAGAGCCAAATGCTACT
TGTCGATGTCGATCCACCGGAGAGAGATTGCTGTTTTCACGCGTACATGT
TATCGTATTTGGTGTGTGTGTGTGTGTGTGCATAGGATTTTACGCTTTTC
AGTTCGTGGGGTTTCTAATTAAGGCGGCGTTTCGACTGTCCACTTTTGCA
GTGTAAATGCATATACTCCATTTTTTGTTTCTTCCTACACAGATAGGGTA
GGGAAGAAGCAAATGTTTTTTAGCACCACCTTTGAGAAAGCAGGAAGGAA
CGATTTAAACCAATCAACGATCGAGCACGTAGGAGCATTGCCCCGTCCTC
CCTCCCTTCACAGTCAAGTCAATATTAATGGTGTATTAACAGTATTAACA
GCAGCTAAGGCTTGCTCAGACAGATTACGCCACGTTTTTCTCTTGAGTTG
CCTAGCCTCGCCTCGCCTCTAGCGGAGAAACCGAGGGACGAATTATCCCG
AAATGTTTTAAGTGGCATGGCGCTTGACAAATGAACGCCGCTCTCCATGC
TCTCGCTCCTTCTCTTCGATCGTCCGATTGACACAGTTCCCTTGGAAGGA
GCGCAAATCTCTCCTGTACGTCCTGTGGACAGTGATCATCTCGCCGTTAG
GGCAGGTCCGATTCCTCGAGGGCTACGTTGGAGATATCCTCACC
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Coding sequence (CDS) from alignment at H-elongata_contig179955:121..964+

>mRNA_H-elongata_contig179955.4784.1 ID=mRNA_H-elongata_contig179955.4784.1|Name=mRNA_H-elongata_contig179955.4784.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig179955:121..964+ (Himanthalia elongata Himel1 dioecious)
ATGAGCATCTGTTTCCTGGTGTGCTTCGTAGGCTTCTACAAGGCCCTTCG
CGGTGCCATGGGGAGCCTCTTCCGCGAAGAATTCGCGCACGTTTTTCCGC
TAGTGCTCCTGGTTTACATGGCGATAGCGTTTGTGATGAGCATCTGTTTC
CTGGTGTGCTTCGTAGGCTTCTACAAGGCCCTTCGCGGTGCCATGGGGAG
CCTCTTCCGCGAAGAATTCGCGCACGTTTTTCCGCTAGTGCTCCTGGTTT
ACATGGCGATAGCGTTTGTGTTCCCTTGGAAGGAGCGCAAATCTCTCCTG
TACGTCCTGTGGACAGTGATCATCTCGCCGTTAGGGCAGGTCCGATTCCT
CGAGGGCTACGTTGGAGATATCCTCACCTTCCCTTGGAAGGAGCGCAAAT
CTCTCCTGTACGTCCTGTGGACAGTGATCATCTCGCCGTTAGGGCAGGTC
CGATTCCTCGAGGGCTACGTTGGAGATATCCTCACC
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