mRNA_H-elongata_contig17991.4783.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17991.4783.1
Unique NamemRNA_H-elongata_contig17991.4783.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: D7G3Y7_ECTSI (Bardet-Biedl syndrome 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y7_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 8.720e-91
Identity = 145/201 (72.14%), Postives = 170/201 (84.58%), Query Frame = 1
Query:   10 GSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSELMD 612
            G   + +LNR A L K K       G PPEQDIPLK+PKKTKLYVEQTQR KLQA EIH A+QKDLC LRLTAARAYVK ITDG+ GVSA+G +ASLRL+A+CQGLGP FKI+LELQNQG+  LTNLPVAF+YDR+IY ME+GQ ++SAL+PGV+S+H+I IT+IDEGGA+G VRI+VLSPSGP+PLVSAVV MPLSEL+D
Sbjct:  401 GKLTIFMLNRKADLRKPKTFGAATAGYPPEQDIPLKVPKKTKLYVEQTQRAKLQAGEIHRAFQKDLCLLRLTAARAYVKTITDGRQGVSAVGAAASLRLHAQCQGLGPNFKIKLELQNQGDRALTNLPVAFTYDRDIYAMEKGQFMVSALIPGVSSRHEIAITNIDEGGAAGSVRILVLSPSGPSPLVSAVVNMPLSELID 601          
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: A0A2P4WVL1_9STRA (Bardet-Biedl syndrome 1 family protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WVL1_9STRA)

HSP 1 Score: 176 bits (447), Expect = 3.000e-52
Identity = 99/200 (49.50%), Postives = 138/200 (69.00%), Query Frame = 1
Query:    4 RAGSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSE 603
            ++G+ ++ IL R+A L  +   SE A G PPEQDIPL IPKKT LYVEQTQRE+  A E+H  +Q+DLC+LRLT ARAYVK+I DG+  VS     A++RLNA+ QG+GP F+I+L +QN G   +T++ +AF YD ++Y +++  ++I  ++P V  Q+ + + SI E GA+  V I V       PLVSAVV+MPLSE
Sbjct:   30 KSGALSLKILKRTASLEAI---SEAA-GPPPEQDIPLNIPKKTTLYVEQTQRERDHATEMHRHFQRDLCKLRLTTARAYVKIIKDGQGPVS-YSTGAAIRLNAQVQGIGPFFRIKLNVQNAGTKAVTDITIAFHYDHDLYRVQQSLLLIPLVIPNVQYQYAVDVESISELGAADNVSIFVCGKESCVPLVSAVVSMPLSE 224          
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: A0A067C4C7_SAPPC (BBS1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C4C7_SAPPC)

HSP 1 Score: 181 bits (458), Expect = 2.460e-50
Identity = 101/202 (50.00%), Postives = 133/202 (65.84%), Query Frame = 1
Query:    1 HRAGSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSEL 606
            H++G+  + IL R+A L     +S    G PPEQDIPL +PKKTKLYVEQTQRE+  A E+H  +Q+DLC+LRLT  R+YVKVI DG+  VS     AS+RLNA+ QGLGP FKIQL+LQN G   + ++P+A  YD  +Y + +  + I  LLPGV   + I + SID  GA+  + I V       P+VSAVV MPLS++
Sbjct:  385 HKSGALTLKILQRNADLEGTSTSS----GPPPEQDIPLNVPKKTKLYVEQTQRERDHAIEMHRHFQRDLCKLRLTTVRSYVKVIRDGQGPVS-FATGASIRLNAKVQGLGPHFKIQLQLQNSGAKFVADIPIALHYDHGLYRIPQSLLQIPLLLPGVQYAYAIDVESIDATGAADSIYIFVCGKDSCVPIVSAVVNMPLSDV 581          
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: A0A7S3EZY8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EZY8_9EUKA)

HSP 1 Score: 171 bits (434), Expect = 1.900e-49
Identity = 90/199 (45.23%), Postives = 131/199 (65.83%), Query Frame = 1
Query:    7 AGSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSE 603
            +G+  + +L R A L      S  + G PPEQD+PL IPKKTKLYVEQTQRE+ QA E+H  +Q+DLC+LRL+ ARAYVK+ITDG+ G  +    +++RL A+ QGLGP+FK++LELQN G  T+T + V  SY+  +Y +++    I  L+PG+  +    +  +DE G +  +++ V S     P +SA+V MP+SE
Sbjct:   96 SGALTIKMLQRLADLEN----SSHSPGPPPEQDVPLSIPKKTKLYVEQTQREREQATEMHRVFQRDLCKLRLSTARAYVKIITDGQ-GPMSYSAGSAMRLTAQVQGLGPRFKVKLELQNNGSRTVTGMAVTISYNSMLYRLKQCVFAIPVLVPGLTHRLDAAVECVDERGGTDAIKVFVCSAKSALPALSAIVNMPVSE 289          
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: A0A1V9ZTA5_9STRA (Bardet-Biedl syndrome 1 family protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTA5_9STRA)

HSP 1 Score: 177 bits (448), Expect = 8.900e-49
Identity = 97/203 (47.78%), Postives = 133/203 (65.52%), Query Frame = 1
Query:    1 HRAGSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSELM 609
            H++G+  + IL R+A L      +  A+G PPEQDIPL +PKKTKLYVEQTQRE+  A E+H  +Q+DLC+LRLT  R+YVKVI DG+  VS     AS+RLNA+ QG+GP FK+QL+LQN G     ++P+   YD  +Y + +  + I  LLPGV   + I + +I + GA+  + I V       PLVSAVV MPLS+++
Sbjct:  403 HKSGALTLKILQRNADLEG----TSTASGPPPEQDIPLNVPKKTKLYVEQTQRERDHAVEMHRHFQRDLCKLRLTTVRSYVKVIRDGQGPVS-YATGASIRLNAKVQGIGPLFKVQLQLQNSGAKFAADVPIVLHYDHGLYRIRQSLLQIPLLLPGVQYAYTIDVENISDTGAADSIYIFVCGKDSCVPLVSAVVNMPLSDIV 600          
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: A0A7S2GD99_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GD99_9STRA)

HSP 1 Score: 166 bits (421), Expect = 9.960e-49
Identity = 87/196 (44.39%), Postives = 129/196 (65.82%), Query Frame = 1
Query:   28 ILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSELMDC 615
            +L RSA L  +K       G P EQD+ + IPKKT+LY++QT+REK QA E+H  +Q DLC+LRL   R+YVK+ITDG+ G+S +G   S+RLN + QGLGPKFK+ +E+QN G   ++N+P+  ++++++Y  ER    +  LLPG+  +    +  I+   A   +R+IVL+P    PL+SA+V MP SE  +C
Sbjct:    6 MLQRSANLGTMKCEQ----GPPKEQDMKIPIPKKTQLYLDQTEREKKQAPEMHRIFQNDLCKLRLQTTRSYVKLITDGQMGISPIG-GTSIRLNPQIQGLGPKFKLSVEIQNGGSTIMSNIPITVAHNQDLYRFERSYSALPILLPGLLCKVVFDLECINPEVAPQSIRVIVLNPMSSIPLISAIVNMPPSEAAEC 196          
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: A0A0P1A9C4_PLAHL (Quinonprotein alcohol dehydrogenase-like superfamily n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9C4_PLAHL)

HSP 1 Score: 175 bits (444), Expect = 2.530e-48
Identity = 93/200 (46.50%), Postives = 134/200 (67.00%), Query Frame = 1
Query:    4 RAGSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSE 603
            ++G+ ++ IL R+A L  +      A G PPEQDIPL IPKKT LY+EQTQRE+ QA E+H  +Q+DLC+LRL  ARAYVK+I DG HG+ +    A++RLNA+  G+GP F+I+L +QN G   +T++ VAF +D  +YC+++  I I  L+P V   + + + SI + GA+  V I V +     PLVSA+++MPL E
Sbjct:  376 KSGALSLNILKRTASLDAISA----AAGPPPEQDIPLNIPKKTTLYLEQTQRERDQATEMHRHFQRDLCKLRLNTARAYVKIIKDG-HGLVSYSTGAAIRLNAQVLGIGPSFRIKLNIQNAGFKAVTSITVAFQFDHELYCVKQSLIPIPLLIPNVLYHYAVDVDSISQLGAADNVSIFVCAKESSIPLVSAIISMPLCE 570          
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: W4FS53_9STRA (BBS1 domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FS53_9STRA)

HSP 1 Score: 175 bits (444), Expect = 3.220e-48
Identity = 98/203 (48.28%), Postives = 130/203 (64.04%), Query Frame = 1
Query:    1 HRAGSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSELM 609
            H+ G+  + IL R+A L      S  A G PPEQDIPL +PKKTKLYVEQTQRE+  A E+H  +Q+DLC+LRLT  R+YVKVI DG+  VS     A++RLNA+ QG+GP+FKIQL+LQN G    + +P+A  YD  +Y +     ++  LLPGV   + + + S+    A+  + I V       PLVSAVV MPLSEL+
Sbjct:  400 HKTGALTLKILQRNADLE----ASATAAGPPPEQDIPLNVPKKTKLYVEQTQRERDHATEMHRHFQRDLCKLRLTTVRSYVKVIRDGQGPVS-YATGAAIRLNAKVQGIGPRFKIQLQLQNSGTKFASEVPIALHYDHTLYRVGTSLFVVPLLLPGVPYAYTVDVESV--ASAADSIYIFVCGKDSCVPLVSAVVNMPLSELL 595          
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: A0A8K1CTH1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTH1_PYTOL)

HSP 1 Score: 175 bits (443), Expect = 3.690e-48
Identity = 100/201 (49.75%), Postives = 132/201 (65.67%), Query Frame = 1
Query:    4 RAGSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSEL 606
            + G+ ++ IL R+A L  +   SE A G PPEQDIPL IPKKTKLYVEQTQRE+  A E+H  +Q+DLC+LRLT ARAYVK+I DG+  VS     A++RLNA+ QGLGP F+I+L +QN G   +T++ VAF YD  +Y   +   +I  ++P V   +   +T I + GA+  V I V       PLVSAVV MPLSE+
Sbjct:  389 KGGALSLKILKRTASLEAI---SEAA-GPPPEQDIPLNIPKKTKLYVEQTQRERDHATEMHRHFQRDLCKLRLTTARAYVKIIKDGQGPVS-YSTGAAIRLNAQVQGLGPSFRIKLNVQNAGTKAVTDITVAFHYDHELYRFTKSVFVIPLVIPNVQYTYLADVTCISDAGAADSVYIFVCGKDSCIPLVSAVVNMPLSEV 584          
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: A0A485KBD8_9STRA (Aste57867_1873 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KBD8_9STRA)

HSP 1 Score: 174 bits (442), Expect = 5.370e-48
Identity = 98/201 (48.76%), Postives = 130/201 (64.68%), Query Frame = 1
Query:    1 HRAGSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSE 603
            H+ G+  + IL R+A L      S  A G PPEQDIPL +PKKTKLYVEQTQRE+  A E+H  +Q+DLC+LRLT  R+YVKVI DG+  VS     AS+RLNA+ QG+GP+FKIQL+LQN G      +P+A  YD ++Y ++   + +  LLPG+   + I + S+   GA+  + I V       PLVSAVV MPL+E
Sbjct:  392 HKTGALTLKILQRNADLE----ASATAAGPPPEQDIPLNVPKKTKLYVEQTQRERDHATEMHRHFQRDLCKLRLTTVRSYVKVIRDGQGPVS-YATGASIRLNAKVQGVGPRFKIQLQLQNSGTKFAAEVPLALHYDHSLYRVDTSLLYVPLLLPGIQYAYTIDVESL--AGAADSIYIFVCGKDSCVPLVSAVVNMPLAE 585          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3Y7_ECTSI8.720e-9172.14Bardet-Biedl syndrome 1 n=1 Tax=Ectocarpus silicul... [more]
A0A2P4WVL1_9STRA3.000e-5249.50Bardet-Biedl syndrome 1 family protein (Fragment) ... [more]
A0A067C4C7_SAPPC2.460e-5050.00BBS1 domain-containing protein n=2 Tax=Saprolegnia... [more]
A0A7S3EZY8_9EUKA1.900e-4945.23Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A1V9ZTA5_9STRA8.900e-4947.78Bardet-Biedl syndrome 1 family protein n=1 Tax=Ach... [more]
A0A7S2GD99_9STRA9.960e-4944.39Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0P1A9C4_PLAHL2.530e-4846.50Quinonprotein alcohol dehydrogenase-like superfami... [more]
W4FS53_9STRA3.220e-4848.28BBS1 domain-containing protein n=3 Tax=Aphanomyces... [more]
A0A8K1CTH1_PYTOL3.690e-4849.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485KBD8_9STRA5.370e-4848.76Aste57867_1873 protein n=1 Tax=Aphanomyces stellat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17991contigH-elongata_contig17991:5..1641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score290.0
Seed ortholog evalue8.5e-76
Seed eggNOG ortholog2880.D7G3Y7
Preferred nameBBS1
KEGG koko:K16746
GOsGO:0000003,GO:0000226,GO:0000902,GO:0000904,GO:0001085,GO:0001103,GO:0001501,GO:0001664,GO:0001764,GO:0001894,GO:0001895,GO:0003008,GO:0003352,GO:0003356,GO:0003674,GO:0005102,GO:0005113,GO:0005119,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005929,GO:0005930,GO:0006629,GO:0006810,GO:0006892,GO:0006893,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007600,GO:0007606,GO:0007608,GO:0007610,GO:0007635,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008594,GO:0009566,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010817,GO:0010970,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016358,GO:0016477,GO:0019953,GO:0021537,GO:0021543,GO:0021544,GO:0021591,GO:0021756,GO:0021761,GO:0021766,GO:0021987,GO:0022008,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030534,GO:0030705,GO:0030900,GO:0031090,GO:0031175,GO:0031253,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0032989,GO:0032991,GO:0033036,GO:0033365,GO:0034451,GO:0034464,GO:0034613,GO:0035721,GO:0036064,GO:0040011,GO:0040012,GO:0042048,GO:0042073,GO:0042221,GO:0042445,GO:0042461,GO:0042592,GO:0042886,GO:0042995,GO:0043001,GO:0043005,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0045444,GO:0045494,GO:0046530,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048854,GO:0048856,GO:0048869,GO:0048870,GO:0048871,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0051179,GO:0051216,GO:0051219,GO:0051234,GO:0051270,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0060170,GO:0060249,GO:0060271,GO:0060295,GO:0060296,GO:0060322,GO:0060632,GO:0061351,GO:0061448,GO:0061512,GO:0061951,GO:0065007,GO:0065008,GO:0070491,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090150,GO:0097014,GO:0097458,GO:0098588,GO:0098590,GO:0098876,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902019,GO:1905515,GO:1990778,GO:2000145
EggNOG free text desc.Bardet-biedl syndrome 1
EggNOG OGs2CMUT@1,2QS2X@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size618
Cds size618
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17991.4783.1prot_H-elongata_contig17991.4783.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17991 5..1641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930038.1067173-CDS-H-elongata_contig17991:4..1211622930038.1067173-CDS-H-elongata_contig17991:4..121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17991 5..121 +
1691679256.8868206-CDS-H-elongata_contig17991:4..1211691679256.8868206-CDS-H-elongata_contig17991:4..121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17991 5..121 +
1622930038.1185188-CDS-H-elongata_contig17991:656..8661622930038.1185188-CDS-H-elongata_contig17991:656..866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17991 657..866 +
1691679256.8975692-CDS-H-elongata_contig17991:656..8661691679256.8975692-CDS-H-elongata_contig17991:656..866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17991 657..866 +
1622930038.137524-CDS-H-elongata_contig17991:1120..12581622930038.137524-CDS-H-elongata_contig17991:1120..1258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17991 1121..1258 +
1691679256.9063497-CDS-H-elongata_contig17991:1120..12581691679256.9063497-CDS-H-elongata_contig17991:1120..1258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17991 1121..1258 +
1622930038.1575236-CDS-H-elongata_contig17991:1488..16411622930038.1575236-CDS-H-elongata_contig17991:1488..1641Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17991 1489..1641 +
1691679256.915798-CDS-H-elongata_contig17991:1488..16411691679256.915798-CDS-H-elongata_contig17991:1488..1641Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17991 1489..1641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17991.4783.1

>prot_H-elongata_contig17991.4783.1 ID=prot_H-elongata_contig17991.4783.1|Name=mRNA_H-elongata_contig17991.4783.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
HRAGSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQ
TQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASL
RLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIII
SALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLS
ELMDC*
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mRNA from alignment at H-elongata_contig17991:5..1641+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17991.4783.1 ID=mRNA_H-elongata_contig17991.4783.1|Name=mRNA_H-elongata_contig17991.4783.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1637bp|location=Sequence derived from alignment at H-elongata_contig17991:5..1641+ (Himanthalia elongata Himel1 dioecious)
CATCGCGCAGGCAGCCCAGCCGTCGTCATACTCAACCGCAGTGCTATGCT ATCGAAGCTGAAGGTGACAAGTGAAGTAGCAACTGGTCGTCCCCCAGAGC AAGACATACCCCTCAAGGTGAACGCATCCCGCAATTTATGTTTACGACCG ATCGCACGTTAGCTTTTGGAAGTCGGAAGACTTTGTGTCGTCTCTCCCTG TGCATCTTACCCGTAGGCACTACGTCCTAGCTCACGAATGGCGAGTCGAG TCAAGATTTGTGATGCCGGCCTAGGGCCAAAGCGTCTCGATCTAGTTTAA CGGGACAGCTCGTTGAGCGTGCTCATGTGCGATCTTACAATCGAACATCG AACATCGAACAAGTTATACGTCTCATGAGTCCCAACATTCGCGCTAGGGA ACAATTTGAGCCACCTGTGGCCGGAAGTTTGGCGAACTACAGCTTTTTAT GTGACATGCGCTTGTCCTCGTGAAACGGTCATCTACCTCTCCGTCGTGTC TGACGCTTTAACTGATTTTCCCATCAGACAAAAAATGATAAAAGTAATAC AAAATGTAGACTATTGCAAGGGCTTCCACTCACCATATGCTAATTTACAA CGCAAGCAATCTACCACGCTGTGATTTCTTGGCATGACCTTGACCCGGTA AGATTCCCAAGAAAACGAAGCTGTACGTGGAGCAGACACAGCGTGAGAAG CTTCAGGCTAAGGAGATACACCACGCGTACCAGAAGGACCTCTGTCGGCT GAGGCTCACGGCAGCCCGAGCTTACGTGAAGGTCATCACGGACGGCAAGC ACGGCGTCAGCGCTCTAGGACGTTCAGCGTCATTACGTCTAAATGCGCGG TGTCAGGGGTTGGTAAGCAAGGGCCGCGACTTGGCGGGATGTATGAGGCA CAAGCACCGTGGTGCGTTTTTGCCGTTATTCTATCCCAAAGTGCGAAGTA TGAAGCATTAACAGATTAATAGGGGTGTGTGCGTTGGTAACGTCGCGAAT GATCAGACGCTTTCCAAACAGGACCAGGTGCACCTTTAAAAGCTCTGCAC GCGTTTGTATTCCCCTTCGTTTATTTCCACCCCCTCTGTTTTCCCTCGGT TGGCATTCTCATTAAGGGTCCGAAGTTTAAGATACAGCTGGAGCTTCAGA ATCAGGGCGAGCACACACTCACGAACCTACCAGTGGCCTTTTCTTATGAC CGGAACATTTACTGCATGGAGCGGGGGCAGATAATTATATCTGCTCTTCT TCCGGTAGATCGATAACCCACCAGGACATGGGATGGATTACCTCCCCTGA CTGAACATCACACCCGCTTTTGCTGAATGCGTAACCATCCGTTCTATCGA CTCGTCGAAATGCTGCCGTCGATTAGATGGGAGCGTCCTCACGCGCACGT CCGAGCAGAACCTCCTACGGGTTCTCTCTTCCCTGCTTCTCGCGCTAAAT GTTTCTACCACCCATTTGACCGATCAAAACACAGGGCGTTGCCTCTCAGC ACCAGATAGGTATAACCTCAATCGACGAAGGCGGAGCTTCTGGTCCTGTG CGAATCATAGTTTTGAGCCCCTCAGGACCAACTCCCTTGGTCTCCGCCGT GGTGACCATGCCCCTCAGCGAGCTCATGGACTGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig17991:5..1641+

>mRNA_H-elongata_contig17991.4783.1 ID=mRNA_H-elongata_contig17991.4783.1|Name=mRNA_H-elongata_contig17991.4783.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig17991:5..1641+ (Himanthalia elongata Himel1 dioecious)
CATCGCGCAGGCAGCCCAGCCGTCGTCATACTCAACCGCAGTGCTATGCT
ATCGAAGCTGAAGGTGACAAGTGAAGTAGCAACTGGTCGTCCCCCAGAGC
AAGACATACCCCTCAAGCATCGCGCAGGCAGCCCAGCCGTCGTCATACTC
AACCGCAGTGCTATGCTATCGAAGCTGAAGGTGACAAGTGAAGTAGCAAC
TGGTCGTCCCCCAGAGCAAGACATACCCCTCAAGATTCCCAAGAAAACGA
AGCTGTACGTGGAGCAGACACAGCGTGAGAAGCTTCAGGCTAAGGAGATA
CACCACGCGTACCAGAAGGACCTCTGTCGGCTGAGGCTCACGGCAGCCCG
AGCTTACGTGAAGGTCATCACGGACGGCAAGCACGGCGTCAGCGCTCTAG
GACGTTCAGCGTCATTACGTCTAAATGCGCGGTGTCAGGGGTTGATTCCC
AAGAAAACGAAGCTGTACGTGGAGCAGACACAGCGTGAGAAGCTTCAGGC
TAAGGAGATACACCACGCGTACCAGAAGGACCTCTGTCGGCTGAGGCTCA
CGGCAGCCCGAGCTTACGTGAAGGTCATCACGGACGGCAAGCACGGCGTC
AGCGCTCTAGGACGTTCAGCGTCATTACGTCTAAATGCGCGGTGTCAGGG
GTTGGGTCCGAAGTTTAAGATACAGCTGGAGCTTCAGAATCAGGGCGAGC
ACACACTCACGAACCTACCAGTGGCCTTTTCTTATGACCGGAACATTTAC
TGCATGGAGCGGGGGCAGATAATTATATCTGCTCTTCTTCCGGGTCCGAA
GTTTAAGATACAGCTGGAGCTTCAGAATCAGGGCGAGCACACACTCACGA
ACCTACCAGTGGCCTTTTCTTATGACCGGAACATTTACTGCATGGAGCGG
GGGCAGATAATTATATCTGCTCTTCTTCCGGGCGTTGCCTCTCAGCACCA
GATAGGTATAACCTCAATCGACGAAGGCGGAGCTTCTGGTCCTGTGCGAA
TCATAGTTTTGAGCCCCTCAGGACCAACTCCCTTGGTCTCCGCCGTGGTG
ACCATGCCCCTCAGCGAGCTCATGGACTGTTGAGGCGTTGCCTCTCAGCA
CCAGATAGGTATAACCTCAATCGACGAAGGCGGAGCTTCTGGTCCTGTGC
GAATCATAGTTTTGAGCCCCTCAGGACCAACTCCCTTGGTCTCCGCCGTG
GTGACCATGCCCCTCAGCGAGCTCATGGACTGTTGA
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