mRNA_H-elongata_contig179659.4769.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179659.4769.1
Unique NamemRNA_H-elongata_contig179659.4769.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig179659.4769.1 vs. uniprot
Match: A0A146H803_MYCCL (CCHC-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H803_MYCCL)

HSP 1 Score: 65.5 bits (158), Expect = 1.850e-9
Identity = 45/179 (25.14%), Postives = 79/179 (44.13%), Query Frame = 1 
Query:    1 LVKADADKRVFFSTKSPVAGWDRVASFHRAETQGAKLLFSRQVLSARLQPNKDPEIVIGEIVELLVALNEVGIPVHEEFIWLHFVDNLSPGYEFIKNNLQGSKEPLTRAVLEDALRRRYNVQSIGKKGRTIPETALFVSGSKAGRGISKGSSSSQVKITCNHCQKPGHIRPNCPERQCF 537
            +++ D  +  + ++  P   W  +   HRA      L   RQ L+++ + ++  E  IG I  +++ +   GI V E+   L F   L   YE +  N   +  P  +  +E  + R  N ++          T    +GS A   I+  +   Q  +TC  C K GH++ +CPERQ +
Sbjct:   81 ILRVDGGQLPYMTSSDPREIWLALQRMHRAAGFATSLALRRQFLTSKKRDDQSMEAWIGYIQAMVIRMKYAGINVTEQDKILAFTMGLPAAYEAVIINFDAT--PPDQLTVEHVISRLLNEETRQASAAISAATGTSANGSPAPDDIAYAARR-QPDLTCFWCDKKGHVKNDCPERQAY 256
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BLAST of mRNA_H-elongata_contig179659.4769.1 vs. uniprot
Match: A0A803Q6S7_CANSA (CCHC-type domain-containing protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803Q6S7_CANSA)

HSP 1 Score: 53.9 bits (128), Expect = 3.330e-5
Identity = 45/173 (26.01%), Postives = 81/173 (46.82%), Query Frame = 1 
Query:   37 STKSPVAG-WDRVASFHRAETQGAKLLFSRQVLSARLQPNKDPEIVIGEIVELLVALNEVGIPVHEEFIWLHFVDNL-SPGYEFIKNNLQGSKEPLTRAVLEDALRRRYNVQSIGKKGRTIPETA---LFV------SGSKAGRGISKGSSSSQVKITCNHCQKPGHIRPNCP 522
            S ++  AG W ++ + +  ++   +L   +++ S R+ P K  E  + +  ++++ L  +GI + +E   +  +++L S  YE   + +   K  LT   +  AL  +     I +K     E A   L V       G+KA    SKG  +S+ K  C  C KP H+R +CP
Sbjct:   76 SKETTAAGMWLKLENLYMVKSLANRLFLKQKLYSFRMIPGKSVEDHLDDFNKIVLDLENIGIKIEDEDQAIIVLNSLPSEQYEHFVDTMMYGKSSLTLEEVVTALMSK----EIKRKSENSEENAGDGLLVRGKFQKKGNKAQGSPSKGKGNSKTKRRCYVCNKPTHLRKDCP 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179659.4769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A146H803_MYCCL1.850e-925.14CCHC-type domain-containing protein n=1 Tax=Mycena... [more]
A0A803Q6S7_CANSA3.330e-526.01CCHC-type domain-containing protein n=1 Tax=Cannab... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179659contigH-elongata_contig179659:312..917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size537
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930036.6024778-CDS-H-elongata_contig179659:311..4121622930036.6024778-CDS-H-elongata_contig179659:311..412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179659 312..412 -
1691679256.3019633-CDS-H-elongata_contig179659:311..4121691679256.3019633-CDS-H-elongata_contig179659:311..412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179659 312..412 -
1622930036.6208413-CDS-H-elongata_contig179659:481..9171622930036.6208413-CDS-H-elongata_contig179659:481..917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179659 482..917 -
1691679256.309719-CDS-H-elongata_contig179659:481..9171691679256.309719-CDS-H-elongata_contig179659:481..917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179659 482..917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179659.4769.1prot_H-elongata_contig179659.4769.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179659 312..917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179659.4769.1

>prot_H-elongata_contig179659.4769.1 ID=prot_H-elongata_contig179659.4769.1|Name=mRNA_H-elongata_contig179659.4769.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
LVKADADKRVFFSTKSPVAGWDRVASFHRAETQGAKLLFSRQVLSARLQP
NKDPEIVIGEIVELLVALNEVGIPVHEEFIWLHFVDNLSPGYEFIKNNLQ
GSKEPLTRAVLEDALRRRYNVQSIGKKGRTIPETALFVSGSKAGRGISKG
SSSSQVKITCNHCQKPGHIRPNCPERQCF
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mRNA from alignment at H-elongata_contig179659:312..917-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179659.4769.1 ID=mRNA_H-elongata_contig179659.4769.1|Name=mRNA_H-elongata_contig179659.4769.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=606bp|location=Sequence derived from alignment at H-elongata_contig179659:312..917- (Himanthalia elongata Himel1 dioecious)
CTCGTTAAGGCCGATGCTGATAAACGTGTCTTTTTCAGTACAAAGTCGCC
AGTGGCTGGTTGGGACAGGGTCGCCTCTTTTCATCGCGCAGAAACCCAAG
GAGCGAAGTTACTCTTTAGTAGACAGGTCCTCAGCGCACGGCTTCAGCCG
AATAAAGACCCTGAAATAGTAATCGGCGAAATAGTGGAACTGCTTGTAGC
CCTTAACGAGGTGGGGATACCAGTACATGAAGAGTTCATCTGGCTACATT
TTGTAGACAACCTTTCGCCAGGTTACGAGTTCATCAAGAATAACCTGCAA
GGCTCGAAGGAGCCACTAACGCGCGCTGTGCTGGAAGACGCGCTGCGCAG
AAGGTACAATGTGCAGTCTATCGGGAAAAAGGGGAGAACAATTCCGGAAA
CTGCACTGTTCGTGTCCGGCTCGAAGGCTGGTAGGGGTGGTCGCCGCGGC
GGAGGTCGCGATGGAAAAATCACACTCGAACCGGACAGCAGGGTCCGGAG
CGAAGGAATTTCCAAAGGCAGCTCTTCATCTCAGGTGAAAATAACTTGTA
ATCATTGCCAGAAGCCAGGGCACATCCGTCCGAACTGTCCTGAGCGACAA
TGTTTC
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Coding sequence (CDS) from alignment at H-elongata_contig179659:312..917-

>mRNA_H-elongata_contig179659.4769.1 ID=mRNA_H-elongata_contig179659.4769.1|Name=mRNA_H-elongata_contig179659.4769.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig179659:312..917- (Himanthalia elongata Himel1 dioecious)
CTCGTTAAGGCCGATGCTGATAAACGTGTCTTTTTCAGTACAAAGTCGCC
AGTGGCTGGTTGGGACAGGGTCGCCTCTTTTCATCGCGCAGAAACCCAAG
GAGCGAAGTTACTCTTTAGTAGACAGGTCCTCAGCGCACGGCTTCAGCCG
AATAAAGACCCTGAAATAGTAATCGGCGAAATAGTGGAACTGCTTGTAGC
CCTTAACGAGGTGGGGATACCAGTACATGAAGAGTTCATCTGGCTACATT
TTGTAGACAACCTTTCGCCAGGTTACGAGTTCATCAAGAATAACCTGCAA
GGCTCGAAGGAGCCACTAACGCGCGCTGTGCTGGAAGACGCGCTGCGCAG
AAGGTACAATGTGCAGTCTATCGGGAAAAAGGGGAGAACAATTCCGGAAA
CTGCACTGTTCGTGTCCGGCTCGAAGGCTGGTAGGGCTCGTTAAGGCCGA
TGCTGATAAACGTGTCTTTTTCAGTACAAAGTCGCCAGTGGCTGGTTGGG
ACAGGGTCGCCTCTTTTCATCGCGCAGAAACCCAAGGAGCGAAGTTACTC
TTTAGTAGACAGGTCCTCAGCGCACGGCTTCAGCCGAATAAAGACCCTGA
AATAGTAATCGGCGAAATAGTGGAACTGCTTGTAGCCCTTAACGAGGTGG
GGATACCAGTACATGAAGAGTTCATCTGGCTACATTTTGTAGACAACCTT
TCGCCAGGTTACGAGTTCATCAAGAATAACCTGCAAGGCTCGAAGGAGCC
ACTAACGCGCGCTGTGCTGGAAGACGCGCTGCGCAGAAGGTACAATGTGC
AGTCTATCGGGAAAAAGGGGAGAACAATTCCGGAAACTGCACTGTTCGTG
TCCGGCTCGAAGGCTGGTAGGGGAATTTCCAAAGGCAGCTCTTCATCTCA
GGTGAAAATAACTTGTAATCATTGCCAGAAGCCAGGGCACATCCGTCCGA
ACTGTCCTGAGCGACAATGTTTCGAATTTCCAAAGGCAGCTCTTCATCTC
AGGTGAAAATAACTTGTAATCATTGCCAGAAGCCAGGGCACATCCGTCCG
AACTGTCCTGAGCGACAATGTTTC
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