mRNA_H-elongata_contig17965.4767.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17965.4767.1 vs. uniprot
Match: D8LPV0_ECTSI (Acyl-CoA-binding domain-containing protein 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV0_ECTSI) HSP 1 Score: 452 bits (1162), Expect = 3.990e-133 Identity = 407/1145 (35.55%), Postives = 535/1145 (46.72%), Query Frame = 1
Query: 1 TAMGSISQTSLHDTQEFVRGLEMQARRILTKANKRRTEELRRQQIMARKIGS-ANVEAPNKFIVEIPPGVHEWGDQLASRRMEISSTGMIATVRAAAGERAKDRSLNGMD---TTLPSLEGSGSTIGNFAGGGGRNTAVQRTLPQITRRAGRLTFETNPSGVGVISRGTAESGVGGSGGELGRGGKVRATVPPVKIDDRLTASPFFSVSMVDLTKPPKCATPDAGNPLSDTGEVEEHPK---SISNVRAITSSKARMAIFDAGLIDPPLRNNKH-KGP-HFEEQGVTSWSSDDLRVKYRAERQREEAYQAFRLEEQVAEALEQDYGQAVAVPEIGRHPLYVAYYAQLEQENSRCLVRASARNKMKRFILDIHTVWMTNLAHHPEFRRMSAGIVATTRVNPTGGVDND--------------------GSNIK------PVASAKRRGLDGGRDTAAIAASQSQIQSVCPELAFRQAVFYSSSSK----------------SDCREG----GVRGGEYKLEREKHAPFTTASSSAWSYDGTDTERGKLTEPPPHTPKVPTLTLLISEQRRLAARLPVNSSRLSRDGDHREALGIGESKARWSSIEGRDPIGTSVLLSETHTRMLRVRRFKP--------------------AAVVVAHSTTNHCSFLMASDESRERSSQDSC--STAVFARGGLTNTEASEVATWIVTSYLPYDGSEMHMFVRDTAVKKAVGEALSM------SCYRYPAPGPRDVETDVREQNKGE---------DGV-----GGRGVRLLVLRRGERIPVLDRDGRVDRTVLAVLEV-----------------FVVSSCR----------------------------------ALSSGTWTTPTKTTIEERDDDNGSALDV--TLLEIVAYPI-ITLPPPLG---------KRRRPQRTILTAGSLWQRRQ---RLHPDVVTLMDAPPED--LVGWLSCASGCSQDSRMEIEYGEKDSGESVDRGDGISRVVNARGSGSRNGSGMIRSLAGDTPEV--------AIEDIVRMVAFGPQNNLDNDRQDGCQ-----VMPLLLRPSQSAGPE----AMVAPCRIKKDSESSAWRIPVGG--ASRLADESRAEVLLSLVRLGAYG 2883
+ +GS + T+ DT+EF+RGLEM AR++LT ANK+R +EL+RQQ +AR++G+ A+V+ P KF++E+PP EWGDQLAS+ MEI+ +GM+ VRA ++ R L+G + ++ P+L G+ + GGR +G + G R VP KID RLT SP FSVSM +LTKPP+ I+N+R + +SK AG R K KG E QGVTSWSSDDLRVKYRAER+REEAYQAFRLEEQV+EALE+DYGQ VAVPE+ RHPLYVAYY QLE+EN+RCL+RASARNKMKRFI D+HTVW+TNLAHHPEFRRM G + G VD G+ I P A+ RRGLDGGRD+ AIAASQSQIQSV P+ AFR A FYS +++ S+ EG G RGG +L A+ ++ + DG E G E PP P L +L SE+RRLA V++ G+ + +S TR+LRV RF P A L+A+ R + + ++G + ATW+++SY PYDGSE + V D AV K VG+ALS + +PG D + +Q +GE G+ GG G RLLVLR+G R+PVLD G V R VL+++E+ +++S R A S G T P+ D +A+ LLE++AYP ++ P + +R +R ILTA SLWQRR+ L P D PP + WL D IE + + +R R + G G S GD V A++D+V MVAFGP ++ D CQ MPL+L P+QS GPE A+V P R + SA + V G + LA ESRAE+LLSLVRLG+ G
Sbjct: 3 SVLGSKTTTAHDDTREFIRGLEMTARKVLTNANKKRMQELQRQQNLARRLGTNADVDPPKKFVIEVPPETEEWGDQLASKTMEIAPSGMVVGVRATR-RPSRHRRLDGSEAAGSSFPALSEGGTNAAEGSDAGGRAGMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAANGAK----GMTRTVVPVAKIDGRLTVSPLFSVSMAELTKPPRXXXXXXXXXXXXXXXXXXXXXXAGGIANMRVVNASKVIGKGRSAGKSPHATRKPKRVKGAAETEGQGVTSWSSDDLRVKYRAEREREEAYQAFRLEEQVSEALEKDYGQVVAVPEVDRHPLYVAYYNQLERENTRCLLRASARNKMKRFITDVHTVWLTNLAHHPEFRRMVRGAAVSQEEGGIGAVDGXXXXXXXXXXXXXXXXXXHSYGNEIDQLEATTPGANPSRRGLDGGRDSVAIAASQSQIQSVQPKRAFRGAFFYSGAAQDSSSWPGQLTSETATSSNQLEGQQSAGTRGGATQL----------AAHNSLTDDGA--EGGDSPELPPAPHASPALAVLASERRRLAT---VSTGGAGSTRXXXXXXXXXXXXXXXXXXXXXXDAGSWLDMS---TRVLRVLRFAPPXXXLPPPGMEFTPGEDGGPADYTDLEPPDKSDGTLVATAREDHRGDKTGLIDQAGLASQGQPSRPPPPPEATWMISSYHPYDGSETRVMVGDVAVAKVVGDALSAHGPLSTAGMSLSSPGAVDAASASSKQKRGEVESGRATIPSGIESAEKGGLG-RLLVLRKGVRVPVLDDHGGVTRKVLSIVELRLRLGSVSSMLLSSHLQSILASLRDTISFCPSPTDRHVPSMLRIRSNTKNKTQVFASSASSEGGKTPPSVADTPIEDGAKVAAMTAGNVLLEVIAYPAGLSAAPEMDGRQEGRESLRREGRRRVILTAESLWQRRRWRRSLRPGAALPWDEPPPEGRPTSWLPRPGKHDDDGSPPIEERRNAARQQAEREGEEERWPVPESI--QGGEGATASEGGDGDAVREKSAHQQALDDLVDMVAFGPHP----EKTDECQGLSSMAMPLVLVPAQSFGPEGQREAVVVPGR-ESAPGCSATSMAVDGLAVALLAQESRAEILLSLVRLGSSG 1116
BLAST of mRNA_H-elongata_contig17965.4767.1 vs. uniprot
Match: A0A6H5KAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT0_9PHAE) HSP 1 Score: 317 bits (811), Expect = 6.530e-87 Identity = 316/920 (34.35%), Postives = 416/920 (45.22%), Query Frame = 1
Query: 709 ISNVRAITSSKARMAIFDAGLIDPPLRNNKH-KGP-HFEEQGVTSWSSDDLRVKYRAERQREEAYQAFRLEEQVAEALEQDYGQAVAVP------------------------EIGRHPLYVAYYAQLEQENSRCLVRASARNKMKRFILDIHTVWMTNLAHHPEFRRMSAGIVATTRVNPTGGVDND--------------------GSNIK------PVASAKRRGLDGGRDTAAIAASQSQIQSVCPELAFRQAVFYSSSSKSDCREGGVRGGEY-----KLEREKHAPFTTASSSAWSYDGTDTERGKLTEPP--PHTPKV-PTLTLLISEQRRLAARLPVNSSRLSRDGDHREALGIGESKARWSSIEGRDPIGTSVLLSETHTRMLRVRRFKPAAVVV-----------AHSTTNHCSF---------LMASDESRERSSQDSCSTAVFARGGLTNTEASEV-------ATWIVTSYLPYDGSEMHMFVRDTAVKKAVGEALSM------SCYRYPAPGPRDVETDVREQNKGE---------DGV-----GGRGVRLLVLRRGERIPVLDRDGRVDRTVLAVLEV-----------FV----------------------------------VSSCRALSSGTWTTPTKTTIEERDDDNGSALDV--TLLEIVAYP--IITLPPPLGKRRRPQ--------RTILTAGSLWQRRQ---RLHPDVVTLMDAPPED--LVGWLSCASGCSQDSRMEIEYGEKDSGESVDRGDGISR-------VVNARGSGSRNGSGMIRSLAGDTPEV---------AIEDIVRMVAFGPQNNLDNDRQDGCQ-----VMPLLLRPSQSAGPEA----MVAPCRIKKDSESSAWRIPVGGA-SRLADESRAEVLLSLVRLGAYG 2883
I+N+R + SK AG K KG E QGVTSWSSDDLRVKYRAER+REEAYQAFRLEEQVAEALE+DYGQ + E+ RHPLYVAYY QLE+EN+RCL+RASARNKMKRFI D+HTVW+TNLAHHPEF RM G + G VD G+ I P A+ RRGLDG RD+ AIAASQSQIQSV P+ AFR A FYS +++ G E +LE E A ++ +++ + + EPP P P V P L +L SE+RRLAA V++ G R ++ + TR+LRV RF P A + ++ L+A+++ +R +T + + G + + ATW+++SY PYDGSE + V D AV K VG+ALS + +PG D + +Q +GE G+ GG G RLLVLRRG R+PVLD G V R VL+++EV FV V + A S G T P+ T D +A+ LLE++AYP + T P G++ + R ILTA SLWQRR+ L P V D PP + WL +D IE K + + + G+G V G+ + G G + A++D+V MVAFGP + ++ D CQ MPL+L P+QS GPE +V P R + + G A + LA+ES+AE+LLSLVRLG+ G
Sbjct: 35 IANMRVVNPSKVIGKGRSAGKSPHATSKPKRVKGAAETEGQGVTSWSSDDLRVKYRAEREREEAYQAFRLEEQVAEALEKDYGQGIQEKDSRTSLELTLYQKKLSSPPHNVDVEVDRHPLYVAYYNQLERENTRCLLRASARNKMKRFITDVHTVWLTNLAHHPEFHRMVRGATVSQEEGGVGAVDGXXXXXXXXXXXXXXXXXXDSCGNEIDQLQATTPGATPSRRGLDGRRDSVAIAASQSQIQSVQPKRAFRGAFFYSGAAQDSSSSPGQLSSETATSSNRLEGEGSAGTRGGATQLAAHNSLTDDGAEGGEPPELPPAPHVSPALAVLASERRRLAA---VSTGD---PGSTRRSVXXXXXXXXXXXXXXXXXXNAGSWF-DMSTRVLRVLRFAPPXXXXXXPGMAITPGEAGGSADYADLEPPHKSDETLVATEQEDDRGD----ATGLIDQPGPASQKRPSPXXXXXXEATWMISSYHPYDGSETRVMVGDVAVAKVVGDALSAHDPLSTAGMSLSSPGAADAASASSKQTRGEVESGRATVPSGIESAEKGGLG-RLLVLRRGVRVPVLDERGGVTRKVLSIVEVSSSSLAAVVALFVPVVVSVAATVLLSLLPLHVPSMLGIRSNTQNKTQVFASSASSEGGKTPPSVTDTPVEDAAKVAAMTAGNVLLEVIAYPTGLSTAPEMDGRQEGRESLRHEGRRRVILTAESLWQRRRWRRSLRPGVALPWDEPPPEGGPTSWLPRPGKRDEDGSPPIEERRKFARQQAE-GEGEEERWPVPESVQGGEGATASEGGGRXXXXXXXXXDAVGKKSAHQQALDDLVDMVAFGPPS----EKTDECQGLSSMAMPLILVPAQSFGPEGQRETVVLPGREAAPACFATSTAMDGLAVALLAEESKAEILLSLVRLGSSG 937
BLAST of mRNA_H-elongata_contig17965.4767.1 vs. uniprot
Match: A0A1V9ZHP7_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZHP7_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 6.220e-15 Identity = 55/145 (37.93%), Postives = 83/145 (57.24%), Query Frame = 1
Query: 733 SSKARMAIFDAGLIDPPLR----NNKHKGPH--FEEQGVTSWSSDDLRVKYRAERQREEAYQAFRLEEQVAEALEQDYGQAVAVPEIGRHPLYVAYYAQLEQENSRCLVRASARNKMKRFILDIHTVWMTNLAHHPEFRRMSAGI 1149
S++ RM +A DP R ++ H P E QG TSW+ DDL VKYR E++RE A+ A ++ +E+L +P + RHPLYV Y+ L+ +N + A+NK K+F+L++HTVW+TNL H E +++ I
Sbjct: 164 STERRMC--NACWADPMKRTKCEHSLHSNPRDMIELQGATSWAIDDLYVKYRGEKEREAAWNASCALQEASESL--------VIPILERHPLYVKYFYTLDHDNQYVQTLSRAKNKTKQFLLNVHTVWLTNLDHFNEVYHLNSNI 298
BLAST of mRNA_H-elongata_contig17965.4767.1 vs. uniprot
Match: A0A485L9M9_9STRA (Aste57867_18277 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9M9_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.470e-12 Identity = 65/184 (35.33%), Postives = 90/184 (48.91%), Query Frame = 1
Query: 805 GP-HFEEQGVTSWSSDDLRVKYRAERQREEAYQAFRLEEQVAEALEQDYGQAVAVPEIGRHPLYVAYYAQLEQENSRCLVRASARNKMKRFILDIHTVWMTNLAHHPEFRRMSAGIVATTRVNPTGGVDNDGSNIKPVASAKRRGLDGGRDTAAIAASQSQIQSVCPELAFRQAVFYSSSSKSD 1353
GP E QG TSWSSDD+ KYRAER+RE A+ VA Q V VP + RHPLY Y+ +E +N+ + A+N+ K+F+LD++ VW+TNL H F M G ++ P +GL G D AI SQIQSV A + + S+++ +
Sbjct: 219 GPGEMELQGATSWSSDDIHFKYRAEREREAAW--------VASTTLQATDSPV-VPILERHPLYDKYFHTVETDNTYVQNLSRAKNQTKQFVLDVNRVWLTNLDH---FNTML------------------GHDVSP----STKGLRGRHDLGAIRQGYSQIQSVSMACALKNTILPSATNDGE 368
BLAST of mRNA_H-elongata_contig17965.4767.1 vs. uniprot
Match: A0A8J2SJV8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJV8_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 3.670e-6 Identity = 36/108 (33.33%), Postives = 61/108 (56.48%), Query Frame = 1
Query: 796 KHKGPHFEEQGVTSWSSDDLRVKYRAERQREEAYQ-AFRLEEQVAEALEQDYGQAVAVPEIGRHPLYVAYYAQLEQENSRCLVRASARNKMKRFILDIHTVWMTNLAH 1116
K K + E+ G T WS +DL KYR + R+ A+ + +++E +E ++++ ++V + RHPL E N C+ R AR +RF+L++H +W+TNL H
Sbjct: 181 KGKNANIEKTGPTIWSVEDLNSKYRNKLLRKSAHHVSLKVQELQSELVKEE--SLISVVGLTRHPLLALCDQHTETANLLCIGRGRARCVARRFVLEVHQIWLTNLDH 286 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17965.4767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17965.4767.1 >prot_H-elongata_contig17965.4767.1 ID=prot_H-elongata_contig17965.4767.1|Name=mRNA_H-elongata_contig17965.4767.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=962bp MGSISQTSLHDTQEFVRGLEMQARRILTKANKRRTEELRRQQIMARKIGSback to top mRNA from alignment at H-elongata_contig17965:117..6402- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17965.4767.1 ID=mRNA_H-elongata_contig17965.4767.1|Name=mRNA_H-elongata_contig17965.4767.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6286bp|location=Sequence derived from alignment at H-elongata_contig17965:117..6402- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17965:117..6402- >mRNA_H-elongata_contig17965.4767.1 ID=mRNA_H-elongata_contig17965.4767.1|Name=mRNA_H-elongata_contig17965.4767.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5772bp|location=Sequence derived from alignment at H-elongata_contig17965:117..6402- (Himanthalia elongata Himel1 dioecious)back to top |