mRNA_H-elongata_contig179557.4761.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 236 bits (603), Expect = 2.750e-76 Identity = 116/184 (63.04%), Postives = 142/184 (77.17%), Query Frame = 1
Query: 1 HMRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTKYLSKHRHRNLIKLINEFNA 552
H T K LRYLAG+ DFSITYK+GGF+LA FSD+NW NNP N +STSSY+ MLANAP+SF+ LQGLTA STMEAELVA+AL MKEAVFCSNM+ ELGF + F +P+Y N + LH GNR++S R KHIALR+FF++ELV EGKISIH D LA +GTK+ +KHR ++L+ IN F+
Sbjct: 29 HTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNFDV 212
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 244 bits (622), Expect = 3.110e-76 Identity = 119/184 (64.67%), Postives = 144/184 (78.26%), Query Frame = 1
Query: 1 HMRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTKYLSKHRHRNLIKLINEFNA 552
HM KH LRYLAG+ DFSITYK+GGF+LA FSD+NW NNP N +STSSY+ MLANAP+SF+ LQGLTA STMEAELVA+AL MKEAVFCSNM+ ELGF + F +P+Y N + LH GNR++S R KHIALR+FF++ELV EGKISIH D LAD+GTK+ +KHR +L+ LIN F+
Sbjct: 254 HMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNFDV 437
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 241 bits (615), Expect = 5.040e-73 Identity = 118/184 (64.13%), Postives = 144/184 (78.26%), Query Frame = 1
Query: 1 HMRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTKYLSKHRHRNLIKLINEFNA 552
HM KH LRYLAG+ DFSITYK+GGF+LA FSD+NW NNP N +STSSY+ MLANAP+SF+ LQGLTA STMEAELVA+AL MKEAVFCSNM+ ELG + F +P+Y N + LH GNR++S R KHIALR+FF++ELV EGKISIH V D LAD+GTK+ +KHR ++L+ LIN +
Sbjct: 475 HMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNLDV 658
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 246 bits (627), Expect = 1.040e-72 Identity = 119/184 (64.67%), Postives = 146/184 (79.35%), Query Frame = 1
Query: 1 HMRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTKYLSKHRHRNLIKLINEFNA 552
HM KH LRYLAG+ DFSITYK+GGF+LA FSD+NW NNP N +STSSY+ MLANAP+SF+ LQGLTA STMEAELVA+AL MKEAVFCSNM+ ELGF + F +P+Y N + LH GNR++S R KHIALR+FF++ELV EGKISIH V+ D LAD+GTK+ + HR ++L+ LIN F+
Sbjct: 814 HMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNFDV 997
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 239 bits (609), Expect = 1.370e-69 Identity = 117/184 (63.59%), Postives = 144/184 (78.26%), Query Frame = 1
Query: 1 HMRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTKYLSKHRHRNLIKLINEFNA 552
HM KH LRYLAG+ DFSITYK+GGF+LA FSD+NW NNP N +STSSY+ +LANAP+SF+ LQGLTA STMEAELVA+AL M EAVF SNM+ ELGF + F +P+Y N + LH GNR++S R KHIALR+FF++ELV EGKISIH V D LAD+GTK+ +KHR ++L+ LIN F+
Sbjct: 1483 HMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNFDV 1666
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 227 bits (578), Expect = 7.620e-66 Identity = 112/181 (61.88%), Postives = 140/181 (77.35%), Query Frame = 1
Query: 1 HMRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTKYLSKHRHRNLIKLINE 543
HM KHLLRYL+GS DFSITYK+GGF L A SD NWGNNP N +S SSYI+M++ AP+SFK LQ LTA ST+EAELVA AL MKE +FC+NM+ ELGF F S PLYI N + LHV GN+T+S R KH+ALR+F+++E+V+EG+ISIH + D LAD+GTK+L+K RH+ LI I +
Sbjct: 508 HMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKIKK 687
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5KCX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX7_9PHAE) HSP 1 Score: 207 bits (526), Expect = 8.300e-64 Identity = 120/260 (46.15%), Postives = 148/260 (56.92%), Query Frame = 1
Query: 4 MRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLY---------IGNMS-------------------------------------------------------------------ALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTK-YLSKHRHRNLIKLINEFNA 552
M KH LRYLAG+ DFSITYK+GGF+LA FSD+NW NNP N +STSSY+ MLANAP+SF+ LQGLTA STMEAELVA+AL MKEAVFCSNM+ ELGF + F +P+Y +GN S LH GNR++S R KHIALR+FF++ELV EGKISIH V D LAD+GTK +++KHR ++L+ L+N F+
Sbjct: 1 MVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFINKHRFKHLMDLVNNFDV 260
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE) HSP 1 Score: 211 bits (537), Expect = 4.230e-61 Identity = 104/184 (56.52%), Postives = 133/184 (72.28%), Query Frame = 1
Query: 1 HMRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTKYLSKHRHRNLIKLINEFNA 552
HM K RYLAG+T F I YK+GGF+L AF+D+NWGNNP N +STSS++ ML +AP++FK LQ LT +STME ELVA AL +KEAVFCSN++ ELGF + VPLY N + LH GNR+YS KHIALR+FF++ELV EG+I+IH V AD+GTK+L+K R + L+ +I FN
Sbjct: 537 HMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNFNV 720
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 207 bits (528), Expect = 1.210e-59 Identity = 103/182 (56.59%), Postives = 136/182 (74.73%), Query Frame = 1
Query: 1 HMRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTKYLSKHRHRNLIKLINEF 546
HM KHLLRYL+GS DFSITYK+GGF L A S+ N G+N N +S SSYI+M++ AP S K LQ LTA ST+EAELVA+AL MKE +FC+NM+ ELGF F S PL+I + + L+V GN+T+S KH+ALR+F+++++V+EG+ISIH + D LAD+GT+YL+K RH+ LI I F
Sbjct: 595 HMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLIDKIKNF 776
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE) HSP 1 Score: 195 bits (495), Expect = 9.450e-57 Identity = 98/151 (64.90%), Postives = 117/151 (77.48%), Query Frame = 1
Query: 1 HMRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIH 453
HM KHLLR G+ DF ITYK+GGF+L AFSD NW +NP N+RSTSSY++M++ AP+SFK LQ LT STMEAEL+A AL MKEAVFCSNM+ ELGF + FG VPLYI N + LHV GN+ YS R KHIAL +F V+ELV+EG I+IH
Sbjct: 353 HMGAAKHLLR---GTQDFCITYKRGGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFGQQFGQVPLYINNTATLHVIGNQAYSSRTKHIALLFFCVRELVKEGAITIH 500 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig179557.4761.1 >prot_H-elongata_contig179557.4761.1 ID=prot_H-elongata_contig179557.4761.1|Name=mRNA_H-elongata_contig179557.4761.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=184bp MRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIback to top mRNA from alignment at H-elongata_contig179557:391..945- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig179557.4761.1 ID=mRNA_H-elongata_contig179557.4761.1|Name=mRNA_H-elongata_contig179557.4761.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=555bp|location=Sequence derived from alignment at H-elongata_contig179557:391..945- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig179557:391..945- >mRNA_H-elongata_contig179557.4761.1 ID=mRNA_H-elongata_contig179557.4761.1|Name=mRNA_H-elongata_contig179557.4761.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1104bp|location=Sequence derived from alignment at H-elongata_contig179557:391..945- (Himanthalia elongata Himel1 dioecious)back to top |