mRNA_H-elongata_contig179531.4760.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179531.4760.1
Unique NamemRNA_H-elongata_contig179531.4760.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig179531.4760.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 48.1 bits (113), Expect = 8.180e-5
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 MGSDAP-EQTNDGRPGENYFEDNQILNTGEGVKIKEADNIVISGEL 135
             GSD P +  +DGRP +N FE+N+ILN  +GVKIKE D+ VI+  +
Sbjct:  422 QGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNV 467
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BLAST of mRNA_H-elongata_contig179531.4760.1 vs. uniprot
Match: A0A6H5J9X8_9PHAE (MEP24 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X8_9PHAE)

HSP 1 Score: 45.8 bits (107), Expect = 9.140e-5
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    4 GSDAP-EQTNDGRPGENYFEDNQILNTGEGVKIKEADNIVISGE 132
            GSD P +  +DG P +N F + +ILN  +GVKIKE D+ VI+GE
Sbjct:   47 GSDEPTDGVSDGHPSDNLFGNKRILNAAKGVKIKEGDDAVITGE 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179531.4760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRM4_ECTSI8.180e-552.17Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
A0A6H5J9X8_9PHAE9.140e-552.27MEP24 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179531contigH-elongata_contig179531:101..286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930035.9547613-CDS-H-elongata_contig179531:100..2861622930035.9547613-CDS-H-elongata_contig179531:100..286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179531 101..286 +
1691679256.0636892-CDS-H-elongata_contig179531:100..2861691679256.0636892-CDS-H-elongata_contig179531:100..286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179531 101..286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179531.4760.1prot_H-elongata_contig179531.4760.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179531 101..286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179531.4760.1

>prot_H-elongata_contig179531.4760.1 ID=prot_H-elongata_contig179531.4760.1|Name=mRNA_H-elongata_contig179531.4760.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MGSDAPEQTNDGRPGENYFEDNQILNTGEGVKIKEADNIVISGELVFYFP
IKRCPFEISLI*
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mRNA from alignment at H-elongata_contig179531:101..286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179531.4760.1 ID=mRNA_H-elongata_contig179531.4760.1|Name=mRNA_H-elongata_contig179531.4760.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig179531:101..286+ (Himanthalia elongata Himel1 dioecious)
ATGGGGTCAGACGCGCCAGAGCAGACAAACGACGGGCGACCGGGTGAGAA
CTACTTTGAGGACAACCAAATCCTCAACACGGGGGAGGGCGTCAAGATCA
AAGAGGCAGATAACATTGTTATCTCCGGTGAGCTCGTTTTCTATTTTCCG
ATTAAGAGGTGCCCTTTTGAAATAAGCTTGATTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig179531:101..286+

>mRNA_H-elongata_contig179531.4760.1 ID=mRNA_H-elongata_contig179531.4760.1|Name=mRNA_H-elongata_contig179531.4760.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig179531:101..286+ (Himanthalia elongata Himel1 dioecious)
ATGGGGTCAGACGCGCCAGAGCAGACAAACGACGGGCGACCGGGTGAGAA
CTACTTTGAGGACAACCAAATCCTCAACACGGGGGAGGGCGTCAAGATCA
AAGAGGCAGATAACATTGTTATCTCCGGTGAGCTCGTTTTCTATTTTCCG
ATTAAGAGGTGCCCTTTTGAAATAAGCTTGATTTGAATGGGGTCAGACGC
GCCAGAGCAGACAAACGACGGGCGACCGGGTGAGAACTACTTTGAGGACA
ACCAAATCCTCAACACGGGGGAGGGCGTCAAGATCAAAGAGGCAGATAAC
ATTGTTATCTCCGGTGAGCTCGTTTTCTATTTTCCGATTAAGAGGTGCCC
TTTTGAAATAAGCTTGATTTGA
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