mRNA_H-elongata_contig179262.4750.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig179262.4750.1
Unique Name	mRNA_H-elongata_contig179262.4750.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig179262.4750.1 vs. uniprot
Match: A0A6H5L470_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L470_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.030e-12
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 1

Query:    1 EKEFMVCALDLLSGMSEGLGSEFQSLLASSNLLQLLLQV-GDQ 126
            EKEFMVCALDLLSGMSEGLG  F SLLASSNLLQLLLQ  GD+
Sbjct:  640 EKEFMVCALDLLSGMSEGLGGSFGSLLASSNLLQLLLQCCGDE 682

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BLAST of mRNA_H-elongata_contig179262.4750.1 vs. uniprot
Match: A0A438K3Z1_VITVI (Transportin-1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438K3Z1_VITVI)

HSP 1 Score: 53.5 bits (127), Expect = 7.750e-8
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1

Query:    1 EKEFMVCALDLLSGMSEGLGSEFQSLLASSNLLQLLLQ 114
            +KEF+VC+LDLLSG++EGLGS  +SL A SNL  LLLQ
Sbjct:   33 DKEFIVCSLDLLSGLAEGLGSGIESLAAQSNLRDLLLQ 70

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BLAST of mRNA_H-elongata_contig179262.4750.1 vs. uniprot
Match: A0A6V7Q6W7_ANACO (Uncharacterized protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7Q6W7_ANACO)

HSP 1 Score: 55.5 bits (132), Expect = 1.110e-7
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1

Query:    1 EKEFMVCALDLLSGMSEGLGSEFQSLLASSNLLQLLLQ 114
            EKEF+VC+LDLLSG++EGLGS  +SL+A SNL  LLLQ
Sbjct:  576 EKEFIVCSLDLLSGLAEGLGSGIESLVAQSNLRDLLLQ 613

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BLAST of mRNA_H-elongata_contig179262.4750.1 vs. uniprot
Match: A0A6P5F4Z5_ANACO (LOW QUALITY PROTEIN: transportin-1-like n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5F4Z5_ANACO)

HSP 1 Score: 55.5 bits (132), Expect = 1.110e-7
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1

Query:    1 EKEFMVCALDLLSGMSEGLGSEFQSLLASSNLLQLLLQ 114
            EKEF+VC+LDLLSG++EGLGS  +SL+A SNL  LLLQ
Sbjct:  630 EKEFIVCSLDLLSGLAEGLGSGIESLVAQSNLRDLLLQ 667

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BLAST of mRNA_H-elongata_contig179262.4750.1 vs. uniprot
Match: S8D2G4_9LAMI (Importin N-terminal domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8D2G4_9LAMI)

HSP 1 Score: 55.5 bits (132), Expect = 1.110e-7
Identity = 26/38 (68.42%), Postives = 34/38 (89.47%), Query Frame = 1

Query:    1 EKEFMVCALDLLSGMSEGLGSEFQSLLASSNLLQLLLQ 114
            +KEF+VC+LDLLSG++EGLGSE +SL+  SNL +LLLQ
Sbjct:  643 DKEFIVCSLDLLSGLAEGLGSEIESLVLRSNLRELLLQ 680

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BLAST of mRNA_H-elongata_contig179262.4750.1 vs. uniprot
Match: A0A8J5LY86_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LY86_ZINOF)

HSP 1 Score: 55.1 bits (131), Expect = 1.520e-7
Identity = 26/38 (68.42%), Postives = 34/38 (89.47%), Query Frame = 1

Query:    1 EKEFMVCALDLLSGMSEGLGSEFQSLLASSNLLQLLLQ 114
            +KEF+VC+LDLLSG++EGLGS  +SL+A+SNL  LLLQ
Sbjct:  147 DKEFIVCSLDLLSGLAEGLGSSVESLVATSNLRDLLLQ 184

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BLAST of mRNA_H-elongata_contig179262.4750.1 vs. uniprot
Match: A0A8J5HVS4_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5HVS4_ZINOF)

HSP 1 Score: 55.1 bits (131), Expect = 1.520e-7
Identity = 26/38 (68.42%), Postives = 34/38 (89.47%), Query Frame = 1

Query:    1 EKEFMVCALDLLSGMSEGLGSEFQSLLASSNLLQLLLQ 114
            +KEF+VC+LDLLSG++EGLGS  +SL+A+SNL  LLLQ
Sbjct:  425 DKEFIVCSLDLLSGLAEGLGSSVESLVATSNLRDLLLQ 462

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BLAST of mRNA_H-elongata_contig179262.4750.1 vs. uniprot
Match: A0A453DL83_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453DL83_AEGTS)

HSP 1 Score: 53.9 bits (128), Expect = 2.220e-7
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1

Query:    1 EKEFMVCALDLLSGMSEGLGSEFQSLLASSNLLQLLLQ 114
            +KEF+VCALDLLSG++EGLG   +SL+A SNL  LLLQ
Sbjct:   12 DKEFIVCALDLLSGLTEGLGGGIESLVAQSNLRDLLLQ 49

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BLAST of mRNA_H-elongata_contig179262.4750.1 vs. uniprot
Match: A0A1U8A4U5_NELNU (transportin-1-like n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8A4U5_NELNU)

HSP 1 Score: 54.3 bits (129), Expect = 2.850e-7
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1

Query:    1 EKEFMVCALDLLSGMSEGLGSEFQSLLASSNLLQLLLQ 114
            +KEF+VC+LDLLSG++EGLGS  +SL+A SNL  LLLQ
Sbjct:  631 DKEFIVCSLDLLSGLAEGLGSGIESLVAQSNLRDLLLQ 668

[Close]

BLAST of mRNA_H-elongata_contig179262.4750.1 vs. uniprot
Match: UPI0005D37FAF (transportin-1 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D37FAF)

HSP 1 Score: 54.3 bits (129), Expect = 2.850e-7
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1

Query:    1 EKEFMVCALDLLSGMSEGLGSEFQSLLASSNLLQLLLQ 114
            +KEF+VC+LDLLSG++EGLGS  +SL+A SNL  LLLQ
Sbjct:  631 DKEFIVCSLDLLSGLAEGLGSGIESLVAQSNLRDLLLQ 668

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig179262.4750.1 vs. uniprot

BLAST of mRNA_H-elongata_contig179262.4750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L470_9PHAE	5.030e-12	86.05	Importin N-terminal domain-containing protein n=2 ...	[more]
A0A438K3Z1_VITVI	7.750e-8	68.42	Transportin-1 n=1 Tax=Vitis vinifera TaxID=29760 R...	[more]
A0A6V7Q6W7_ANACO	1.110e-7	71.05	Uncharacterized protein n=1 Tax=Ananas comosus var...	[more]
A0A6P5F4Z5_ANACO	1.110e-7	71.05	LOW QUALITY PROTEIN: transportin-1-like n=2 Tax=An...	[more]
S8D2G4_9LAMI	1.110e-7	68.42	Importin N-terminal domain-containing protein (Fra...	[more]
A0A8J5LY86_ZINOF	1.520e-7	68.42	Uncharacterized protein n=1 Tax=Zingiber officinal...	[more]
A0A8J5HVS4_ZINOF	1.520e-7	68.42	Uncharacterized protein n=1 Tax=Zingiber officinal...	[more]
A0A453DL83_AEGTS	2.220e-7	68.42	Uncharacterized protein n=2 Tax=Aegilops tauschii ...	[more]
A0A1U8A4U5_NELNU	2.850e-7	68.42	transportin-1-like n=1 Tax=Nelumbo nucifera TaxID=...	[more]
UPI0005D37FAF	2.850e-7	68.42	transportin-1 n=1 Tax=Amborella trichopoda TaxID=1...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig179262	contig	H-elongata_contig179262:1090..1230 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	141
Cds size	129
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930035.3406534-UTR-H-elongata_contig179262:1089..1101	1622930035.3406534-UTR-H-elongata_contig179262:1089..1101	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig179262 1090..1101 +
1691679255.8307047-UTR-H-elongata_contig179262:1089..1101	1691679255.8307047-UTR-H-elongata_contig179262:1089..1101	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig179262 1090..1101 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930035.3553624-CDS-H-elongata_contig179262:1101..1230	1622930035.3553624-CDS-H-elongata_contig179262:1101..1230	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig179262 1102..1230 +
1691679255.8407938-CDS-H-elongata_contig179262:1101..1230	1691679255.8407938-CDS-H-elongata_contig179262:1101..1230	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig179262 1102..1230 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig179262.4750.1	prot_H-elongata_contig179262.4750.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig179262 1102..1230 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig179262:1090..1230+
coding sequence from alignment at H-elongata_contig179262:1090..1230+

protein sequence of mRNA_H-elongata_contig179262.4750.1

>prot_H-elongata_contig179262.4750.1 ID=prot_H-elongata_contig179262.4750.1|Name=mRNA_H-elongata_contig179262.4750.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MVCALDLLSGMSEGLGSEFQSLLASSNLLQLLLQVGDQYTKY*

mRNA from alignment at H-elongata_contig179262:1090..1230+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig179262.4750.1 ID=mRNA_H-elongata_contig179262.4750.1|Name=mRNA_H-elongata_contig179262.4750.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig179262:1090..1230+ (Himanthalia elongata Himel1 dioecious)
GAGAAGGAGTTTATGGTGTGTGCGCTCGACCTTTTGAGTGGAATGTCGGA
AGGGCTGGGGTCCGAGTTCCAGTCTCTTCTGGCCTCCAGCAATCTCTTGC
AACTCCTTCTTCAGGTGGGTGACCAGTATACTAAATACTAG

Coding sequence (CDS) from alignment at H-elongata_contig179262:1090..1230+

>mRNA_H-elongata_contig179262.4750.1 ID=mRNA_H-elongata_contig179262.4750.1|Name=mRNA_H-elongata_contig179262.4750.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig179262:1090..1230+ (Himanthalia elongata Himel1 dioecious)
ATGGTGTGTGCGCTCGACCTTTTGAGTGGAATGTCGGAAGGGCTGGGGTC
CGAGTTCCAGTCTCTTCTGGCCTCCAGCAATCTCTTGCAACTCCTTCTTC
AGGTGGGTGACCAGTATACTAAATACTAGATGGTGTGTGCGCTCGACCTT
TTGAGTGGAATGTCGGAAGGGCTGGGGTCCGAGTTCCAGTCTCTTCTGGC
CTCCAGCAATCTCTTGCAACTCCTTCTTCAGGTGGGTGACCAGTATACTA
AATACTAG