mRNA_H-elongata_contig17915.4742.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17915.4742.1
Unique NamemRNA_H-elongata_contig17915.4742.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17915.4742.1 vs. uniprot
Match: D8LTD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTD8_ECTSI)

HSP 1 Score: 394 bits (1013), Expect = 6.230e-123
Identity = 199/244 (81.56%), Postives = 217/244 (88.93%), Query Frame = 3 
Query: 2313 QVLTGQAEMPAEGALTMMQNTANKLNCEVFVGNIPPETQAPTLQEYLGGALVQVGLCKPPNPIASIRMNARFAFLEMRSAEDATRALNLDGIPFAGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLMGNA-----QVAEEETPSTVVRIGNVVTAEELTDDNAHREVVEDMTEECSKYGSVAAIDIPHVGGPASGVGFVFVKYSSIMDAEKAKRGFGARTFDGKSVDAKYFPEDKFAAKSFA 3029
            QVLTGQAEMPAEG + +MQN+A KL+CEVFVGNIPPETQAPTLQEYLGGALVQVGLCKPPNPI SIRMNARFAFLEMR+AE+AT ALNLDGIPF GAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLMG A       AE    STVVRIGNVVT EELTDD A +EVVEDMTEECSKYG+VA I+IPHVGG  +GVGFVFVK+ ++ DA+KAK+GFG+RTFDGKSVDA YFPE++FAAKSFA
Sbjct:   16 QVLTGQAEMPAEGMM-LMQNSATKLSCEVFVGNIPPETQAPTLQEYLGGALVQVGLCKPPNPILSIRMNARFAFLEMRTAEEATAALNLDGIPFGGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLMGGAGQGGAAEAEPAPTSTVVRIGNVVTPEELTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLEDAQKAKKGFGSRTFDGKSVDATYFPEEQFAAKSFA 258
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BLAST of mRNA_H-elongata_contig17915.4742.1 vs. uniprot
Match: A0A6H5LDH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDH7_9PHAE)

HSP 1 Score: 394 bits (1013), Expect = 8.720e-119
Identity = 199/244 (81.56%), Postives = 217/244 (88.93%), Query Frame = 3 
Query: 2313 QVLTGQAEMPAEGALTMMQNTANKLNCEVFVGNIPPETQAPTLQEYLGGALVQVGLCKPPNPIASIRMNARFAFLEMRSAEDATRALNLDGIPFAGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLMGNA-----QVAEEETPSTVVRIGNVVTAEELTDDNAHREVVEDMTEECSKYGSVAAIDIPHVGGPASGVGFVFVKYSSIMDAEKAKRGFGARTFDGKSVDAKYFPEDKFAAKSFA 3029
            QVLTGQAEMPAEG + +MQN+A KL+CEVFVGNIPPETQAPTLQEYLGGALVQVGLCKPPNPI SIRMNARFAFLEMR+AEDAT ALNLDGIPF GAALSVGRPKKYEGPVTPHKTWFDVLAECSFGL+G A       AE    STVVRIGNVVT EELTDD A +EVVEDMTEECSKYG+VA I+IPHVGG  +GVGFVFVK+ ++ DA+KAK+GFG+RTFDGKSVDA YFPE++FAAKSFA
Sbjct:  301 QVLTGQAEMPAEGMM-LMQNSATKLSCEVFVGNIPPETQAPTLQEYLGGALVQVGLCKPPNPILSIRMNARFAFLEMRTAEDATAALNLDGIPFGGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLVGGAGQGGATEAEPAPTSTVVRIGNVVTPEELTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLEDAQKAKKGFGSRTFDGKSVDATYFPEEQFAAKSFA 543
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BLAST of mRNA_H-elongata_contig17915.4742.1 vs. uniprot
Match: A0A835ZNU8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNU8_9STRA)

HSP 1 Score: 241 bits (616), Expect = 9.550e-69
Identity = 130/243 (53.50%), Postives = 169/243 (69.55%), Query Frame = 3 
Query: 2313 QVLTGQAE--MPAEGALTMMQNTANKLNCEVFVGNIPPETQAPTLQEYLGGALVQVGLCKPP-NPIASIRMNARFAFLEMRSAEDATRALNLDGIPFAGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLMGNA--QVAEEETPSTVVRIGNVVTAEELTDDNAHREVVEDMTEECSKYGSVAAIDIPHVGGPASGVGFVFVKYSSIMDAEKAKRGFGARTFDGKSVDAKYFPEDKFAAKSF 3026
            Q+LTGQA   +    A T + +   K N E+FVGN+P E QA  LQ++LG A+ QVGL   P NPI  +RMNARF+FLE RS E+AT AL L+ IPF  + L+  RP KY GPVTP K+WF+ LA+ +  ++GN   Q A    PSTVVRIG+VV A+EL DD +++EV+EDM EECS+YG+V  I+IP     A+GVG+VFV+YS++ +A KA+  F +RTFDGK VDA +F  D FAAK F
Sbjct:    6 QILTGQAPETIATVAAATALVDPNTKTNREIFVGNVPLEAQADALQQFLGSAMQQVGLTTAPGNPIVHVRMNARFSFLEFRSMEEATHALFLNNIPFGSSTLTFARPSKYAGPVTPTKSWFETLADSN--VLGNVMEQQAAGPPPSTVVRIGSVVNADELVDDESYQEVIEDMREECSRYGTVLGIEIPR--NAAAGVGYVFVQYSTVEEATKARNAFSSRTFDGKQVDATFFGHDDFAAKRF 244
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BLAST of mRNA_H-elongata_contig17915.4742.1 vs. uniprot
Match: A0A7S2V6E6_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E6_9STRA)

HSP 1 Score: 194 bits (494), Expect = 4.150e-49
Identity = 108/240 (45.00%), Postives = 146/240 (60.83%), Query Frame = 3 
Query: 2313 QVLTGQAEMPAEGALTMMQNTANKLNCEVFVGNIPPETQAPTLQEYLGGALVQVGLC-KPPNPIASIRMNARFAFLEMRSAEDATRALNLDGIPFAGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLMGNAQVAEEETPSTVVRIGNVVTAEELTDDNAHREVVEDMTEECSKYGSVAAIDIPHVGGPASGVGFVFVKYSSIMDAEKAKRGFGARTFDGKSVDAKYFPEDKFAAKSFA 3029
            Q LTGQ     EGA  +  +T  KL  E+++G+   E     LQE+LG A+ QVGL  +  NPI  +R +  FAF+E+RS E+A   LNL+ IPF G  L +GRP KY GP  PH  W DVLA+   G M     A ++ PS V+ + N+VT +EL DD  ++E+VED  +EC KYG+V +++IP  G P  GVG VF++++S  DA KA      RTF G  VDA+YFPE K+  K  +
Sbjct:  299 QALTGQ--QAPEGASVVDPST--KLYRELYIGSTTAEMTELGLQEFLGTAMQQVGLTLQEGNPIVQVRHSGTFAFVELRSIEEANNCLNLNSIPFMGQFLKIGRPSKYPGPQVPHLNWEDVLAKYMAGEMPTGGGAAQQQPSRVIALSNMVTTDELMDDTTYQEIVEDTRDECGKYGAVQSMEIPRPGAP-HGVGKVFIEFTSTADAAKAIGALKGRTFAGNKVDARYFPESKYQVKDLS 533
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BLAST of mRNA_H-elongata_contig17915.4742.1 vs. uniprot
Match: A0A7S2HGX3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HGX3_9STRA)

HSP 1 Score: 181 bits (458), Expect = 5.520e-46
Identity = 109/253 (43.08%), Postives = 155/253 (61.26%), Query Frame = 3 
Query: 2313 QVLTGQAEMPAEGALTMMQNTA---NKLNCEVFVGNIPPETQAPTLQEYLGGALVQVGLCKPP-NPIASIRMNARFAFLEMRSAEDATRALNLDGIPFAGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLM-----GNAQVA------EEETPSTVVRIGNVVTAEELTDDNAHREVVEDMTEECSKYGSVAAIDIPHVGGPASGVGFVFVKYSSIMDAEKAKRGFGARTFDGKSVDAKYFPEDKFAAKSF 3026
            Q LTGQA +PA G   + +NT+   +K+N E+F+GN  PE     L ++LG A+ QVGL   P NPI + R++ +FAF+E+RS E+A  ALNL+ IP+ GA L VGRP KY G  T H  W D+LA+   G +     G A  A      +  +P+ VV + N++T EELT D  + E++ED  EECS++GS+  + IP  G  A+ +   F++Y S  DA KA +G   RTFDG+ V+A ++ E KFA K +
Sbjct:  126 QELTGQA-LPA-GLTPVPENTSPAEDKVNRELFIGNTTPEMTEGMLTDFLGKAMEQVGLSNQPGNPITACRVSGKFAFIELRSKEEAANALNLNNIPYLGAQLRVGRPSKYTGVQTSHGNWEDILAKYMSGELKLPSQGGAPAAAATPAEDVGSPTRVVELKNMLTKEELTSDQDYEEIMEDTKEECSQFGSLKNLVIPRDGPGATKI---FLEYLSTDDAAKAIQGLAGRTFDGRKVEAVFYDETKFANKEY 373
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BLAST of mRNA_H-elongata_contig17915.4742.1 vs. uniprot
Match: A0A448YVH2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVH2_9STRA)

HSP 1 Score: 178 bits (452), Expect = 8.120e-45
Identity = 107/248 (43.15%), Postives = 147/248 (59.27%), Query Frame = 3 
Query: 2313 QVLTGQAEMPAEGALTMMQNTANKLNCEVFVGNIPPETQAPTLQEYLGGALVQVGL-CKPPNPIASIRMNARFAFLEMRSAEDATRALNLDGIPFAGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLM---------GNAQVAEEETPSTVVRIGNVVTAEELTDDNAHREVVEDMTEECSKYGSVAAIDIPHVGGPASGVGFVFVKYSSIMDAEKAKRGFGARTFDGKSVDAKYFPEDKFAAKSF 3026
            Q LTGQA +PA    T++     K+N E+FVGN  PE     L+E+LG A+ QVGL   P NPI S R++ +FAF+E+RS E+A  ALNL+ IPF GA L VGRP K+ GP   H  W DVLA+   G +         G A +      + VV + N++T E+L+ +  + E+VED  +EC +YG +  + IP  G P  G   VF++Y+S  DA KA +    RTFDG+ V+A +F E KF  K+F
Sbjct:  166 QQLTGQA-LPAG---TVLDAEQEKINRELFVGNTTPEMTERMLREFLGNAMEQVGLNVMPGNPITSCRVSGKFAFVELRSPEEAANALNLNNIPFMGAQLRVGRPSKWSGPPDSHGNWEDVLAKYMSGELQAGNTAPGQGAAAMNSNVKATRVVELKNMLTXEDLSVEEEYNELVEDTEQECKQYGQLLNVYIPKKGEP--GATKVFLEYASTEDASKAIKSLEGRTFDGQRVEATFFDETKFMNKTF 407
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BLAST of mRNA_H-elongata_contig17915.4742.1 vs. uniprot
Match: K0SQC2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQC2_THAOC)

HSP 1 Score: 178 bits (451), Expect = 2.100e-44
Identity = 107/277 (38.63%), Postives = 156/277 (56.32%), Query Frame = 3 
Query: 2313 QVLTGQ------AEMPAEGALTMMQNTANKLNCEVFVGNIPPETQAPTLQEYLGGALVQVGLCKPP-NPIASIRMNARFAFLEMRSAEDATRALNLDGIPFAGAALSVGRPKKYEGPVTPHKTWFDVLAECSFG---LMGNAQ----------------------------VAEEETPSTVVRIGNVVTAEELTDDNAHREVVEDMTEECSKYGSVAAIDIPHVGGPASGVGFVFVKYSSIMDAEKAKRGFGARTFDGKSVDAKYFPEDKFAAKSFA 3029
            Q LTGQ      A +P    +TM  +  +KL+ E+F+GN  PE  A  L+++LG A+ QVGL   P NPI ++R +A+FAF+E+RS ++A  ALNL+ IP+ GA L VGRP KY GP TPH  W D+LA+   G   L  NA                             +A + +PS VV + +++T ++L DDN + +++ED  +ECS +G++  I IP  G  A+ +   F++Y +  DA KA  G   RTFDG+ V A YF   KFA + ++
Sbjct:  162 QQLTGQPLPPGMAAVPENTGVTMALSGEDKLSRELFIGNTTPEMTAEMLRDFLGRAMEQVGLSTMPGNPIVTVRPSAKFAFIEVRSMQEAANALNLNNIPYLGAQLRVGRPSKYSGPETPHGNWEDILAKFMSGELHLKNNATQANPLVQQAHAVAAAASSLAPSLASVPPLASKASPSPVVELRHMLTQQDLDDDNEYNDILEDTRDECSSFGTLKNIVIPRKGPGATKI---FLEYMTAEDAGKAIAGLAGRTFDGRKVTAVYFDTVKFANEDYS 435
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BLAST of mRNA_H-elongata_contig17915.4742.1 vs. uniprot
Match: A0A7S4D6W7_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6W7_HETAK)

HSP 1 Score: 181 bits (459), Expect = 2.170e-44
Identity = 112/307 (36.48%), Postives = 155/307 (50.49%), Query Frame = 3 
Query: 2313 QVLTGQAEMPAEGALTMMQNTANKLNCEVFVGNIPPETQAPTLQEYLGGALVQVGLCKPP-NPIASIRMNARFAFLEMRSAEDATRALNLDGIPFAGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLM----------------------------GNAQVAEEETPSTVVRIGNVVTAEELTDDNAHREVVEDMTEECSKYGSVAAIDIPHVGGPASGVGFVFVKYSSIMDAEKAKRGFGARTFDGKSVDAKYFPEDKFAAKSFAPA*GVRREEHGIRRERKKNIISSPSGDGACTLILALASP 3146
            Q LTGQA  P      +  +   K+  +++VGN  PE   P L+E+LG A+ QVGL +   N I  +R++  FAF+E+RS E+A+  +NL+GIPF G  L + RP KY GP  PH  W D+LA+   G +                                 A   TPS V+ + N+VT ++L DD  + E++ED  +ECSK+G+V  I IP       GVG VFV YSS  +A+KA      RTF G +V+AKYFPE K+ AK F+P             E      ++P G        A A+P
Sbjct:  149 QQLTGQA--PPADPTAVAVDPQTKIYRDLYVGNCSPEMTEPALKEFLGSAMEQVGLNQQEGNCILQVRLSGTFAFIEVRSVEEASHMMNLNGIPFMGQFLKIKRPTKYPGPEVPHLNWDDILAKYMAGELKAKPKMPAVAAAPAAVPSXXXXXXXXXXXXXXXAGPGTPSKVMTLSNMVTHDDLADDETYDEILEDTQDECSKFGAVQTIAIPRPKDGPHGVGLVFVHYSSEEEAKKAIDALSGRTFAGNTVEAKYFPEAKYLAKDFSP-------------EPAAGAAAAPPGGSLVATASAGAAP 440
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BLAST of mRNA_H-elongata_contig17915.4742.1 vs. uniprot
Match: A0A7R9WSI1_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WSI1_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.610e-43
Identity = 93/218 (42.66%), Postives = 134/218 (61.47%), Query Frame = 3 
Query: 2379 NKLNCEVFVGNIPPETQAPTLQEYLGGALVQVGL-CKPPNPIASIRMNARFAFLEMRSAEDATRALNLDGIPFAGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLMGNAQVAEEETPSTVVRIGNVVTAEELTDDNAHREVVEDMTEECSKYGSVAAIDIPHVGGPASGVGFVFVKYSSIMDAEKAKRGFGARTFDGKSVDAKYFPEDKFAAKSFA 3029
            +K+N E+FVGN  P      L ++LG A+ QVGL  KP NPIA+ R++ +FAF+E+RS ++A  ALNL+ IP  GA L +GRP K+ G    H  W D+LA+   G +     A     + VV + N++T+E+L D+N + E++ED   EC ++G++ +I IP    P  G   +F++Y S  DA KA +    RTFDG+ V A YF E KFA+K FA
Sbjct:  204 DKINRELFVGNTTPAMTEAFLTDFLGNAMEQVGLNTKPGNPIAACRVSGKFAFIELRSPQEAANALNLNNIPCMGAYLRIGRPSKWSGTPDTHGNWEDILAKYMSGELQVGAAASSSVTTRVVELHNMLTSEDLEDENEYNEIMEDTRAECGQFGTLKSIVIPKANEP--GATKIFLEYESPDDAAKAIQNLAGRTFDGRKVAAAYFDEGKFASKQFA 419
[Close]
BLAST of mRNA_H-elongata_contig17915.4742.1 vs. uniprot
Match: A0A7R9WB13_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WB13_9STRA)

HSP 1 Score: 167 bits (423), Expect = 8.430e-43
Identity = 94/233 (40.34%), Postives = 140/233 (60.09%), Query Frame = 3 
Query: 2379 NKLNCEVFVGNIPPETQAPTLQEYLGGALVQVGLCKPP-NPIASIRMNARFAFLEMRSAEDATRALNLDGIPFAGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLM-------GNAQVAEEE--------TPST-VVRIGNVVTAEELTDDNAHREVVEDMTEECSKYGSVAAIDIPHVGGPASGVGFVFVKYSSIMDAEKAKRGFGARTFDGKSVDAKYFPEDKFAAKSF 3026
            +K+N E+F+GN  PE     L ++LG A+ QVGL K P NPI + R + +FAF+E+R+ E+A  ALNL+ IP+ GA L VGRP KY GP TPH  W D+LA+   G +       G A              T +T VV + +++T ++L +D  +++++ED TEEC ++GS+  + IP  G  A+ +   F++Y++  DA KA      RTFDG+ V A YF E +FAA+ +
Sbjct:   18 DKINRELFIGNTTPEMTEQMLSDFLGKAMEQVGLSKAPGNPIVTCRTSGKFAFIELRTTEEAASALNLNNIPYLGAQLRVGRPSKYTGPETPHGNWEDILAKYMSGELQLPSAGGGGAXXXXXXXTXXXXXATDATRVVELRHMLTQQDLENDEEYKDILEDTTEECGQFGSLKKVVIPRTGPGATKI---FLEYATKDDAAKAIASLAGRTFDGRKVTAVYFDEGRFAAEDY 247
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17915.4742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTD8_ECTSI6.230e-12381.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LDH7_9PHAE8.720e-11981.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZNU8_9STRA9.550e-6953.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V6E6_9STRA4.150e-4945.00Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S2HGX3_9STRA5.520e-4643.08Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A448YVH2_9STRA8.120e-4543.15Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
K0SQC2_THAOC2.100e-4438.63Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4D6W7_HETAK2.170e-4436.48Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7R9WSI1_9STRA1.610e-4342.66Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
A0A7R9WB13_9STRA8.430e-4340.34Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17915contigH-elongata_contig17915:1299..7251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score382.9
Seed ortholog evalue1.1e-103
Seed eggNOG ortholog2880.D8LTD8
KEGG koko:K12818,ko:K12837
KEGG Pathwayko03040,map03040
EggNOG free text desc.pre-mRNA 3'-splice site binding
EggNOG OGsKOG0120@1,KOG0120@2759
EC3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons5
Model size4758
Cds size702
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930034.245711-UTR-H-elongata_contig17915:1298..30181622930034.245711-UTR-H-elongata_contig17915:1298..3018Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17915 1299..3018 -
1691679255.2033114-UTR-H-elongata_contig17915:1298..30181691679255.2033114-UTR-H-elongata_contig17915:1298..3018Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17915 1299..3018 -
1622930034.3203263-UTR-H-elongata_contig17915:4915..72511622930034.3203263-UTR-H-elongata_contig17915:4915..7251Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17915 4916..7251 -
1691679255.2644808-UTR-H-elongata_contig17915:4915..72511691679255.2644808-UTR-H-elongata_contig17915:4915..7251Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17915 4916..7251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930034.2561228-CDS-H-elongata_contig17915:3018..31201622930034.2561228-CDS-H-elongata_contig17915:3018..3120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17915 3019..3120 -
1691679255.218027-CDS-H-elongata_contig17915:3018..31201691679255.218027-CDS-H-elongata_contig17915:3018..3120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17915 3019..3120 -
1622930034.2661045-CDS-H-elongata_contig17915:3339..34741622930034.2661045-CDS-H-elongata_contig17915:3339..3474Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17915 3340..3474 -
1691679255.2256691-CDS-H-elongata_contig17915:3339..34741691679255.2256691-CDS-H-elongata_contig17915:3339..3474Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17915 3340..3474 -
1622930034.280167-CDS-H-elongata_contig17915:3676..38471622930034.280167-CDS-H-elongata_contig17915:3676..3847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17915 3677..3847 -
1691679255.2358618-CDS-H-elongata_contig17915:3676..38471691679255.2358618-CDS-H-elongata_contig17915:3676..3847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17915 3677..3847 -
1622930034.2930799-CDS-H-elongata_contig17915:4184..43701622930034.2930799-CDS-H-elongata_contig17915:4184..4370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17915 4185..4370 -
1691679255.2434516-CDS-H-elongata_contig17915:4184..43701691679255.2434516-CDS-H-elongata_contig17915:4184..4370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17915 4185..4370 -
1622930034.3061469-CDS-H-elongata_contig17915:4807..49151622930034.3061469-CDS-H-elongata_contig17915:4807..4915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17915 4808..4915 -
1691679255.2512941-CDS-H-elongata_contig17915:4807..49151691679255.2512941-CDS-H-elongata_contig17915:4807..4915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17915 4808..4915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17915.4742.1prot_H-elongata_contig17915.4742.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17915 3019..4915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17915.4742.1

>prot_H-elongata_contig17915.4742.1 ID=prot_H-elongata_contig17915.4742.1|Name=mRNA_H-elongata_contig17915.4742.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp
MPAEGALTMMQNTANKLNCEVFVGNIPPETQAPTLQEYLGGALVQVGLCK
PPNPIASIRMNARFAFLEMRSAEDATRALNLDGIPFAGAALSVGRPKKYE
GPVTPHKTWFDVLAECSFGLMGNAQVAEEETPSTVVRIGNVVTAEELTDD
NAHREVVEDMTEECSKYGSVAAIDIPHVGGPASGVGFVFVKYSSIMDAEK
AKRGFGARTFDGKSVDAKYFPEDKFAAKSFAPA*
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mRNA from alignment at H-elongata_contig17915:1299..7251-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17915.4742.1 ID=mRNA_H-elongata_contig17915.4742.1|Name=mRNA_H-elongata_contig17915.4742.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5953bp|location=Sequence derived from alignment at H-elongata_contig17915:1299..7251- (Himanthalia elongata Himel1 dioecious)
ACAAAATATTTGTATACATATATATATACAGTATGTATACCCTTTGCTCC
GCTCCTGTATACTTTATACTCTATACTGATGACCACGAGCGAGACTGGAC
GTGCGAATTCAATTGAAATCAATAGTGGAGCTGGTTCTAAAGGTAACGCC
ATGGGTGTACCGTCGGAGACACACAAAGCTTTAAACCACATCAATGGTGG
TGCCCAAATTCGGTCAGGGGAAGGGATATTCAATTTGACCCCAATCAAGT
ACTCGTACGCACATGATTATTTGTGAGATTATCTCCTTCGTTCTCCTTCC
CAGGGGCTCGGCGAGGGCAATCAATCATTATAGAGGGTTTGCGTACCTCA
ATGTGTTAGTATATTATAGTTAAGTGTGGTTTGTGCTATCCCTCTCTTTC
CTCCCCCCTTCTCTTGACGACATTGCCTCTCTTTTTCTGATGTATTTATA
TAGCGTTAGCGGGCTTCGAGTGCCATATCGTTGGCATCGAGGGTGGGGGC
GAAAAAACACGGAGACAAAGGTCGGTTGGACAAGGGCGGGGGGGTGATGG
CAAGCAAGCAGCGTGCGGGCTGGCTGGAGCCTTGATTTTGCTCAAGGAGG
GCGCGTTCCCGCTAGCCGCTCTCCTGACCGCAGTCGATGCAGTTGCCGTT
GCGGTTACCATTACCTTCACGAAAACGATTATTATCGTGATCGTTATCGT
TGTAAAGTGAAATAATTGAAATTAGATGGATTGGATTGATTTTAACCCGA
TAAACTTCAAGTAAATAGATTGATTTGGTTTCCTCTGGATTGATTTGAAT
TAAAGGAAATGGTCCCTTTCCACCCCTGCGGGACGCTACCTAAAAATCCC
GAGAGCAGAGGACGGGATGCAACCCATCCCCCGTTTTCCCTTTCCCTTTC
GGCGTGGTCGTTCTTACGAGATGCGACGCATCTTTCGCAAAGAAAAGGCA
GGCCCTTGGTGTGCCGTTGACGGCGCCCGACCCCATTTCCCCCCGTTTTG
ATATCGCTGTGGTGATGGTGACATGATGATGGCCATGATGATGGCATGAA
ATGTCGTGTGTCCTTTTATATGCATATATTTATATTTATATTCTCTGCCG
TTGCTCCACTGCTGACTGCTGGCCACGAGCTATGAATAGTGGAGCTGGTG
CTAAAGGCATGCCGCGATTTTACGGTTGCAGACACACAAGCTGTAAACCA
CGCCATGGTGGTGTGCCCAAATTCGACCATGAATAATGTTGTCCAGGGGG
CGACGCGGGTAGGGGATACTCAACTTGACCCCATCAAACTCGGCGAGAGC
AATCATTAAAGAGAATTTGCGCCCCCCGATGTGTTAATATCGGGTGTGAG
TTAATTTATTTTTCAATTGTGGCAAGAAAGACAGGGAGAACGCTATCGCC
CCACCCCCCCCCCTAGCCCTTCTTTCTCTCTCTTCTTGTCTTCCTTCCTT
CTCCCTTCCCTTTGCTTCCCTTCCCTTCCCTTTCCTTCCCTTCCCTTCCC
TTCCTTCCTCCCTCGTTATCCGCATCTTGACGCTATTTTGCCTCTCTTGT
CTGATGCTGCATTTATCTGATGTTAAGAGGGCTTCGGGTGCTATATCGTT
GGCAACGCGGGCGGGGCGAAAATACACTGACAAAGGTCGGTCAGACAGGG
GTCGGGGGAGGGGGGTGGCAAGCAGGCAGCTTGCGAGCTGGAGGGAGCCA
CGATCTCGCTCAAAAAGAGCGTGCCCCCACTCCTCGCCGCTTTCTTGACT
GCAATCGTTACCGTTGCGGTTACAAATATATTCACGAAAATGGTTACCGT
GATCTTCATCGTTGTACATTGAGGTGATCTCTAGTGGGATGGAATGTAGC
TGAAGTGGCTTGGGTTGAATTTAACCGGATTGATAAGGATTTAACTGTGT
TGACTTGATTTACAATGGATTGACTTATTTGGTCTGGGATAATTTCGATT
GAAGTGATTTGACGATGAACCCTCTCCATCTCTGCATGATGCGGAATATA
CAACTTCTGTTTTGGGGAGACGAAAAGCTGAACTACCGAGATAAGAGGAC
GCTGCGTGGAAACCGTCTCTTGTTCTCCATTTTTTCCACCCCAGCGGCTT
CCGCAGGGCAGTTCGCGTGATGGCTTTTACGAGACAGGACACGCGATGCA
CTGCTCGCTAAAATAAGGCAGGCCCTCAAGATGCCATTGACGGCACCCGA
CCCTATTCCCCCGCGTTTTGGTGTCGCCGTGATAAGCATAAATTGAGGTA
AAACTGATGATGAAATTAGGGTGGAATTATGATGAAATGAGAGTGAAATG
GTGATGGCATGACAGGTGCTGACGGGGCAGGCCGAGATGCCGGCGGAGGG
CGCTTTGACCATGATGCAAAACACGGCAAACAAGCTGAACTGCGAGGTGT
TCGTAGGGAACATTCCGCCGGAAACCCAGGCCCCTACGTTGCAGGTACAG
TTAGCCTGTTGTCCCGAGGAATGAGCGTTCGCTGGTGCCGCCCACGTAGC
TTTCGCGTCTCATGCCTGGCTTGGTATTCGTAGGTGACAGCCGGGCGGTT
TCTCTTCGTTTCTTTTAAAGACTTTCTTAGCAGACTCGGCGGCTTGGGGC
ATATGGTGTGTGTGTGGCTCAACCCACCGTTGTCGTCCAAGTGTCCACTG
CGCAATGTGAGAGTATGCCCGGGGCGGGTAAATGTGTCCTTTCAACCGTG
ATATATTTTGGTCGAACGTGGAGGCATTTTTTACACGGATGATGAGAGGG
CATTCATCGCAGGATGTGAAACCGCTAGCTGCTGTCGTTGCCATATGTGT
CTTTTCTGCGTACTCCTTCTACTCCCCTCGGTTTTCTTTTATCTCTTTAC
TATGTTGTGCATGCGCGCTGCTGCCTCCCAGGAGTACTTGGGAGGGGCTC
TAGTTCAAGTGGGGCTCTGCAAGCCGCCGAACCCCATTGCCTCCATTCGG
ATGAACGCCCGCTTCGCGTTCCTTGAGATGAGGTCGGCGGAAGACGCGAC
CAGGGCGTTGAACCTTGACGGCATCCCGTTCGCCGGTGCCGCGCTCAGCG
TTGGCCGTCCCAAGAAGGTCAGGGTTATAGTCAGCGTGGGGGCGTTTAGC
TATTCTCGGTCCTTTCTGGCTGGATAGTGTTTTACCACTTGGGGTACAGC
GTCAAGCTGACCAACTCATAAAGCTGCAGCCGCACAAGTACCCCTCCTAA
GAAGGTCAGGGTCATAGTCAGCGTGGGGGCGTTTAGCTATTCTCGGCCCT
TTCTGGTTGTATAGTGGTTACCACTCGGGGTACAGCGTCAGGCTGACAAA
CTCATAAAGCTGCAGCTGCACATGTACCCCTTCCGCTGATTACCGAACGC
GTGTTGCTTGTTTCTCGGGGGGGGCGGCGGGGCGCAATGCGTGCGCGACG
GCAGTATGAAGGACCGGTGACGCCCCACAAGACGTGGTTTGACGTCCTTG
CCGAGTGCAGCTTCGGTCTAATGGGGAACGCCCAGGTTGCAGAAGAAGAA
ACACCGTCCACGGTAGTAAGGATAGGCAACGTGGTTACGGCTGAAGAGCT
CACGGATGACAACGCTCATAGAGAGGTATGCGTCTCTTGTGTGGATTATT
TATCCTGACCGTGCCTGCGCTAATGTTCCCTTTTTTCGCATCTACCATGG
TTAGTCGTGGATTGCGTATTATGAACCCCGAAGTTCGCGTTTGACTTGAC
CCAATCGATCACCAGTCGCGCTACAAAGCTTGAGTGTTGCAAGCATTGTT
TGATCTCTGGATGTTGTGGATGAAAAGGTTGTTGAGGACATGACAGAAGA
GTGCTCCAAGTACGGGTCGGTGGCGGCCATCGACATCCCGCACGTGGGAG
GGCCCGCTTCAGGCGTCGGCTTTGTGTTCGTCAAGTACAGCTCTATCATG
GACGCGGAGAAGGTGAGATTGAAAGTGAAGAGTAAATACGGAAGACCGTG
TCTGTGCCCTGTGAATCGGAAGAGTTTAAACACGGAGCATCACACTCTGC
TGTCTGTTGTTGTACGGGAAAGGGCAAGGTATGGCATGCCCCCCCCCCTT
GCATGTTGGTTTGCCGTGTGTTAATTGTTTTTTTCTCAAGTACAGTAAGT
TTGAAGCTATTTTGTGATGTTTTCTACGCAGGCGAAGAGGGGCTTTGGCG
CCCGAACATTCGATGGAAAGTCGGTGGACGCTAAGTACTTTCCGGAGGAC
AAGTTCGCTGCCAAGTCGTTTGCTCCGGCGTGAGGCGTGAGGCGTGAGGA
ACACGGAATTCGTCGAGAGAGGAAAAAAAATATCATTTCGTCGCCCTCGG
GTGATGGTGCGTGTACGCTCATCCTCGCCCTTGCATCACCTTAGTGACGC
CACGACATGTACTAGAGGTAGTGTCACCGGGGGGAAGACTGTGAGGGTTT
AGGTTGCGTCTCTTTTCTGCGATGAGTGATTCCTGCTGGGAAGGGGGGTT
AGAGGACGTCGCAACCCGCGGCGCAATCTGTGGTTGGAGATCCGCGAGCA
ACCATCCACCATTTTTTTGTCAAGCTTATTGGGTAATTCTTTGTAGACTT
CCCATGCGTGACGGTAAATCCTGACGCTACTGTTGCCTTCGAAACTATTT
CCTCTTTTGTAAAGTAGAGCTTTGCCCGATGGTATCTAGCTGTGTGCTGC
TTGTTAAGCGGATCTGGGTCAAATAAGCGAAAAGTTGAGCGGGGTTGCTG
GTGTTCAGGAGTTGTTAAGAGGAAAAGGCGTTGATGGTTTTCATTTGTTT
GCTGCTTCTCTGGTTCGGAGCTTTTGCAGCGGATGAGCGTTAATCGTGAG
GAAGGTGGTAGAACAAGTAACTTTGAAAAAAAAAATACCAAGCCTGGCAA
AAGTTGTTTGTAGTCCCACCCTATACGCGAGTCATTAGGCAGCTGGATAA
ATGATCACCAGCCACTTATTTTATTTACTCTTACAATCCGCCCTCTTACT
CTTTTATATATATATATTTGACATACTTATCTAATATGATGTTAACAGCG
CCCCGATTGAGCACTTCACCCGGTAAATTTTCACGTCCAGTAGGCTATGA
ATTTGGATCTCAGTGAAACTTCTGTTGTAGCGGAAATCGTCAGAATGAGA
GTAAGCAAAGTTCAACCAGAGTTTGGCGAGATGCAGGAACGTTGAGCTTC
TTCGCGATTGAAGGGTCGTAGGCGTGAGCCCGGGTTGAAATGAGTAGATC
TCTTAGGGCCACAGGGGGGATGTGCAGCATGTTGAATGACCACATTGGCA
GAGATTGAGATTTAAAAAATATGCATCGGTTCTCGAAGTTTTCGCACGTG
ACCCTCATCAGTAGAAGTTATTATGGTGGCTGTACGATCCAGTTGGTGAA
ATGAATCCTTTTCAGTGAGGTCATGGAATCTTGTAAAGGAAAAAAAAATC
GCTGTTGACTGTTCGTGGAAAGCTTGTTACTGTTGTCGCTGTAAAGCGGC
TGGCTAGATATACAAAGGTTTTTGTAACCGTTGGCAGAAATGAGAATGGC
CGAAATCCTTAAAAAATATAAGAAAAATAATTTCATTGCTCATTTTCCTT
TCCTTCTCTTGAATGCCTACTCTATACGTTCCGGTTTGGCGTCCGCACAT
CGTGACATATGACGATTTTGTGCTCAACGAGCAGTAATATATACACCTCT
CACGAATAAAATCAAGACAAAGTAATCATCTCCACACACTTTTTTTACCT
GCATGCTCGAAATTGTCAGGAAGTACGGTCTACCGATTCTGCTGGTTATT
GATTAGGTATATTTGAAACGGTATTGTTAGACTACGGAAATGAAGCAGTT
CGTGCAAAGATTAGTGGTCCAAGGCGGAGCCCTGAGGGACCTAAGCTAGC
TGTATTGAAGACTGGCTAGGTATACAAAGGTTTTTGTAACCGTTGGCAGA
AATGAGAATGGCCGAAATCCTTTAAAAATGTAAGAAAAATAATTTCATTA
CCC
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Coding sequence (CDS) from alignment at H-elongata_contig17915:1299..7251-

>mRNA_H-elongata_contig17915.4742.1 ID=mRNA_H-elongata_contig17915.4742.1|Name=mRNA_H-elongata_contig17915.4742.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1404bp|location=Sequence derived from alignment at H-elongata_contig17915:1299..7251- (Himanthalia elongata Himel1 dioecious)
ATGCCGGCGGAGGGCGCTTTGACCATGATGCAAAACACGGCAAACAAGCT
GAACTGCGAGGTGTTCGTAGGGAACATTCCGCCGGAAACCCAGGCCCCTA
CGTTGCAGATGCCGGCGGAGGGCGCTTTGACCATGATGCAAAACACGGCA
AACAAGCTGAACTGCGAGGTGTTCGTAGGGAACATTCCGCCGGAAACCCA
GGCCCCTACGTTGCAGGAGTACTTGGGAGGGGCTCTAGTTCAAGTGGGGC
TCTGCAAGCCGCCGAACCCCATTGCCTCCATTCGGATGAACGCCCGCTTC
GCGTTCCTTGAGATGAGGTCGGCGGAAGACGCGACCAGGGCGTTGAACCT
TGACGGCATCCCGTTCGCCGGTGCCGCGCTCAGCGTTGGCCGTCCCAAGA
AGGAGTACTTGGGAGGGGCTCTAGTTCAAGTGGGGCTCTGCAAGCCGCCG
AACCCCATTGCCTCCATTCGGATGAACGCCCGCTTCGCGTTCCTTGAGAT
GAGGTCGGCGGAAGACGCGACCAGGGCGTTGAACCTTGACGGCATCCCGT
TCGCCGGTGCCGCGCTCAGCGTTGGCCGTCCCAAGAAGTATGAAGGACCG
GTGACGCCCCACAAGACGTGGTTTGACGTCCTTGCCGAGTGCAGCTTCGG
TCTAATGGGGAACGCCCAGGTTGCAGAAGAAGAAACACCGTCCACGGTAG
TAAGGATAGGCAACGTGGTTACGGCTGAAGAGCTCACGGATGACAACGCT
CATAGAGAGTATGAAGGACCGGTGACGCCCCACAAGACGTGGTTTGACGT
CCTTGCCGAGTGCAGCTTCGGTCTAATGGGGAACGCCCAGGTTGCAGAAG
AAGAAACACCGTCCACGGTAGTAAGGATAGGCAACGTGGTTACGGCTGAA
GAGCTCACGGATGACAACGCTCATAGAGAGGTTGTTGAGGACATGACAGA
AGAGTGCTCCAAGTACGGGTCGGTGGCGGCCATCGACATCCCGCACGTGG
GAGGGCCCGCTTCAGGCGTCGGCTTTGTGTTCGTCAAGTACAGCTCTATC
ATGGACGCGGAGAAGGTTGTTGAGGACATGACAGAAGAGTGCTCCAAGTA
CGGGTCGGTGGCGGCCATCGACATCCCGCACGTGGGAGGGCCCGCTTCAG
GCGTCGGCTTTGTGTTCGTCAAGTACAGCTCTATCATGGACGCGGAGAAG
GCGAAGAGGGGCTTTGGCGCCCGAACATTCGATGGAAAGTCGGTGGACGC
TAAGTACTTTCCGGAGGACAAGTTCGCTGCCAAGTCGTTTGCTCCGGCGT
GAGCGAAGAGGGGCTTTGGCGCCCGAACATTCGATGGAAAGTCGGTGGAC
GCTAAGTACTTTCCGGAGGACAAGTTCGCTGCCAAGTCGTTTGCTCCGGC
GTGA
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