mRNA_H-elongata_contig17910.4740.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17910.4740.1
Unique NamemRNA_H-elongata_contig17910.4740.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17910.4740.1 vs. uniprot
Match: D8LLY0_ECTSI (WD-40 repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY0_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.030e-9
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 3 
Query:    3 PISLWLSLVLPLDDGGDSITTMFLETREHGGMWASEWSRRESYPVVPT 146
            P+SLWLSL LP +DGGD +T M LETR HGG    EWSR E +PV  T
Sbjct: 2004 PLSLWLSLFLPDEDGGDPVTAMLLETRRHGGTQPPEWSRCERHPVPST 2051
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17910.4740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLY0_ECTSI2.030e-962.50WD-40 repeat-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17910contigH-elongata_contig17910:35..707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size476
Cds size297
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17910.4740.1prot_H-elongata_contig17910.4740.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17910 35..530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930034.060202-CDS-H-elongata_contig17910:34..2791622930034.060202-CDS-H-elongata_contig17910:34..279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17910 35..279 +
1691679255.1006756-CDS-H-elongata_contig17910:34..2791691679255.1006756-CDS-H-elongata_contig17910:34..279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17910 35..279 +
1622930034.1155696-CDS-H-elongata_contig17910:478..5301622930034.1155696-CDS-H-elongata_contig17910:478..530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17910 479..530 +
1691679255.117004-CDS-H-elongata_contig17910:478..5301691679255.117004-CDS-H-elongata_contig17910:478..530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17910 479..530 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930034.1305723-UTR-H-elongata_contig17910:530..7071622930034.1305723-UTR-H-elongata_contig17910:530..707Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17910 531..707 +
1691679255.1363764-UTR-H-elongata_contig17910:530..7071691679255.1363764-UTR-H-elongata_contig17910:530..707Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17910 531..707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17910.4740.1

>prot_H-elongata_contig17910.4740.1 ID=prot_H-elongata_contig17910.4740.1|Name=mRNA_H-elongata_contig17910.4740.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
GRSLCGFRSSCPSTTVGIPSPLCSLRRGSTAACGRRSGLVAKAIRLFQPP
ELRPTARIPRLRLLVNAKQVIVMAVSRLQPPLAQGRHCWRRYRSINLR*
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mRNA from alignment at H-elongata_contig17910:35..707+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17910.4740.1 ID=mRNA_H-elongata_contig17910.4740.1|Name=mRNA_H-elongata_contig17910.4740.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=673bp|location=Sequence derived from alignment at H-elongata_contig17910:35..707+ (Himanthalia elongata Himel1 dioecious)
GGCCGATCTCTCTGTGGCTTTCGCTCGTCCTGCCCCTCGACGACGGTGGG
GATTCCATCACCACTATGTTCCTTGAGACGAGGGAGCACGGCGGCATGTG
GGCGTCGGAGTGGTCTCGTCGCGAAAGCTATCCGGTTGTTCCAACCGCCA
GAGCTCCGACCAACTGCGCGGATCCCAAGGTTGAGGCTTCTCGTGAACGC
GAAGCAAGTGATCGTCATGGCGGTATCTCGCCTACAACCACCCCTGCTAA
TTACACCACAGCAGTTTGCAGCGAGATTGTCGTATGCGTCGAAAATCTCA
AGCCGCGGACATTCTACTCGTTCCGGGTGTCGGCCGCTAACGGCAAAGGC
GTCAGCGAGCCAGGGCCGTCAAGTCGTCGGATCCGAACATCTCCCGTGCT
GCCTCCCACGTGGGGGAATGTGACGTGCGGGATTACTGGAGAAGGGCGCA
AGGGCGGCACTGCTGGAGGAGATACCGATCGATTAATCTACGATGATTCC
AAGTCCGCTCCTCTTGTGCATCGTCCGTGTCCGCGTGCGGTCTGCTCCGA
GACCGGGGCTTGCACCGTCCTCTGGGACGAGCCGAGCAGCAACGGCGCTC
GGATCGAGTCGTACGAGATCGAAACCGCAGTTCTCGGGAGAACGCTGTCT
GCTGGTACTGCTGACGAGCAAAC
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Coding sequence (CDS) from alignment at H-elongata_contig17910:35..707+

>mRNA_H-elongata_contig17910.4740.1 ID=mRNA_H-elongata_contig17910.4740.1|Name=mRNA_H-elongata_contig17910.4740.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig17910:35..707+ (Himanthalia elongata Himel1 dioecious)
GGCCGATCTCTCTGTGGCTTTCGCTCGTCCTGCCCCTCGACGACGGTGGG
GATTCCATCACCACTATGTTCCTTGAGACGAGGGAGCACGGCGGCATGTG
GGCGTCGGAGTGGTCTCGTCGCGAAAGCTATCCGGTTGTTCCAACCGCCA
GAGCTCCGACCAACTGCGCGGATCCCAAGGTTGAGGCTTCTCGTGAACGC
GAAGCAAGTGATCGTCATGGCGGTATCTCGCCTACAACCACCCCTGGCCG
ATCTCTCTGTGGCTTTCGCTCGTCCTGCCCCTCGACGACGGTGGGGATTC
CATCACCACTATGTTCCTTGAGACGAGGGAGCACGGCGGCATGTGGGCGT
CGGAGTGGTCTCGTCGCGAAAGCTATCCGGTTGTTCCAACCGCCAGAGCT
CCGACCAACTGCGCGGATCCCAAGGTTGAGGCTTCTCGTGAACGCGAAGC
AAGTGATCGTCATGGCGGTATCTCGCCTACAACCACCCCTGGCGCAAGGG
CGGCACTGCTGGAGGAGATACCGATCGATTAATCTACGATGAGGCGCAAG
GGCGGCACTGCTGGAGGAGATACCGATCGATTAATCTACGATGA
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