mRNA_H-elongata_contig179052.4737.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179052.4737.1
Unique NamemRNA_H-elongata_contig179052.4737.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig179052.4737.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 346 bits (888), Expect = 2.540e-107
Identity = 187/296 (63.18%), Postives = 221/296 (74.66%), Query Frame = 1
Query:    7 EEMLGALNRLKRHKSPGSDGIPADVYKLAIGDE--ISPMGKALMAVVG-----QVIPDVWMESTVVSIPKKGDLTDMNNYRGISLMGTGLKVLMVLISLRLSAAMEREGLFSPAQAGFRRQEECATQVACLLEITKRRKIRGKPSYLAFVDLKKAYDTVPHEALLAKLDYYGVRGRMLGFIWALYANRKIAVRCRGGMSDPVALARGVRQGCPLSPLLFNIFINDVLDGAAELGIP-VGAAGEVI--VSGLLFADDLVCTVPTRRKLVGMMEHLTTWLEENEMQVGIKKCGVTVVG 864
            EEM+ AL R+KRHKSPG+DG+PAD  +LA G+E   SPMGK ++ ++      +VIP    ESTVV IPKKGD+TDMNN+RGISLM T LKVL+++IS RL++A ER  LFS +QAGFR +EEC TQ ACLLEI +RRK R K +YL FVDLKKAYDTVP EAL AKL +YGVRG ML FI ALYAN KIAVR    +SD  +L RGVRQGCPLSP+LFNIFIND+LDGA  LG+P VG   E    + GLLFADDLV   PTR KL  M +H++ W+ ENEM  GI KCGV  +G
Sbjct:  503 EEMVEALARIKRHKSPGNDGVPADFLELAGGEEGSQSPMGKTVLGMLNLIWKTRVIPTDRRESTVVPIPKKGDMTDMNNHRGISLMNTVLKVLVMIISTRLNSAFERHKLFSQSQAGFRTREECVTQAACLLEICQRRKFRRKSAYLMFVDLKKAYDTVPQEALFAKLVFYGVRGEMLAFIRALYANSKIAVRTGDLLSDSFSLERGVRQGCPLSPVLFNIFINDILDGAESLGVPEVGNQLERAPRIPGLLFADDLVTISPTRAKLAAMDDHISVWMAENEMSAGIHKCGVMAIG 798          
BLAST of mRNA_H-elongata_contig179052.4737.1 vs. uniprot
Match: A0A7S1SJ55_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SJ55_9CHLO)

HSP 1 Score: 247 bits (631), Expect = 2.350e-71
Identity = 133/301 (44.19%), Postives = 182/301 (60.47%), Query Frame = 1
Query:   10 EMLGALNRLKRHKSPGSDGIPADVYKLAIGDEISPMGKALMAVVGQV-----IPDVWMESTVVSIPKKGDLTDMNNYRGISLMGTGLKVLMVLISLRLSAAMEREGLFSPAQAGFRRQEECATQVACLLEITKRRKIRGKPSYLAFVDLKKAYDTVPHEALLAKLDYYGVRGRMLGFIWALYANRKIAVR---CRGGMSDPVALARGVRQGCPLSPLLFNIFINDVLDGAAELGIPVGAAGEVI-------VSGLLFADDLVCTVPTRRKLVGMMEHLTTWLEENEMQVGIKKCGVTVVGK 867
            E+  AL RL  +K+ G DGI A+  KLAI    SP GK+L+ ++  +     +P  W  S VVSI KKGD+T M+NYRGIS+MG  +K+LM +++ RL    +   L    Q GF   EEC  QVA + +I  RR+  G P+Y  F+DL+KAYDT+PHE L +KL+  G+ G ML F+ ALY +  + V+     G +SDP+ + RG+RQGCP SP+LFNIFIND+ DG   LG  V    +++       V G LFADD V   P+   L  M  H + W E++ M  G+KKCGV  +G+
Sbjct:  401 ELCKALKRLNNNKASGVDGITAETLKLAIYAPDSPFGKSLLELMNNIWTTKCVPKQWCSSAVVSILKKGDVTVMDNYRGISIMGALIKLLMTVVTQRLQDVCQTNKLIRRWQGGFMPGEECPLQVASIFDIAGRRQALGLPTYAGFIDLRKAYDTIPHELLFSKLEANGITGHMLSFLKALYRDSTVQVKTGEAPGILSDPIPIERGLRQGCPASPILFNIFINDIFDGIEGLGCEVPGCVDMLDSRQPLRVPGQLFADDTVGLAPSLDNLHAMFAHFSQWAEDHYMGFGVKKCGVMALGR 701          
BLAST of mRNA_H-elongata_contig179052.4737.1 vs. uniprot
Match: L7JX89_TRAHO (RNA-directed DNA polymerase, Non LTR Retrotransposon (Fragment) n=1 Tax=Trachipleistophora hominis TaxID=72359 RepID=L7JX89_TRAHO)

HSP 1 Score: 232 bits (592), Expect = 1.270e-66
Identity = 126/293 (43.00%), Postives = 175/293 (59.73%), Query Frame = 1
Query:    1 TWEEMLGALNRLKRHKSPGSDGIPADVYKLAIGDEI--SPMGKALMAVVGQV-----IPDVWMESTVVSIPKKGDLTDMNNYRGISLMGTGLKVLMVLISLRLSAAMEREGLFSPAQAGFRRQEECATQVACLLEITKRRKIRGKPSYLAFVDLKKAYDTVPHEALLAKLDYYGVRGRMLGFIWALYANRKIAVRCRGGMSDPVALARGVRQGCPLSPLLFNIFINDVLDGAAELGIPVGAAGEVIVSGLLFADDLVCTVPTRRKLVGMMEHLTTWLEENEMQVGIKKCGVTV 858
            TWEE+L AL    + K+ G+DGIP + YK+   D+   SP G  +  ++ ++     +P+ W E+ +V +PKKGDL +M+NYRGISL+ T  K ++ +I+ +L+       +    QAGFR+ EEC  Q  C  EI KRR ++GKP+   F+D KKAYD VPHE L AKL  YG  GR+L F+  LY N K +VR     SD      GV+QGCP SP LFN++IN++L+G   +GI  G      V GLLFADD V    +   +V  ME L  W ++ +M + I KCG+ V
Sbjct:  212 TWEEVLRALEHSSKGKATGTDGIPIEFYKVLQRDKNRESPFGNFVFQLITEIYAQAKVPEQWNEAMIVPVPKKGDLHNMDNYRGISLINTLCKEVVKIITEKLNRICTTNKILRDEQAGFRKLEECIAQTTCFYEIVKRRSLKGKPTMALFLDFKKAYDKVPHEGLFAKLRGYGFSGRILDFLIELYRNPKASVRIGDERSDTFNYQMGVKQGCPASPTLFNLYINNILEGITGVGIGNGEQ----VPGLLFADDAVVFAESYDDMVHNMEILEDWCDKWKMDLNISKCGLMV 500          
BLAST of mRNA_H-elongata_contig179052.4737.1 vs. uniprot
Match: A0A1R1YP44_9FUNG (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YP44_9FUNG)

HSP 1 Score: 228 bits (582), Expect = 3.220e-64
Identity = 131/291 (45.02%), Postives = 174/291 (59.79%), Query Frame = 1
Query:    1 TWEEMLGALNRLKRHKSPGSDGIPADVYKLAIGDE--ISPMGKALMAVVGQV-----IPDVWMESTVVSIPKKGDLTDMNNYRGISLMGTGLKVLMVLISLRLSAAMEREGLFSPAQAGFRRQEECATQVACLLEITKRRKIRGKPSYLAFVDLKKAYDTVPHEALLAKLDYYGVRGRMLGFIWALYANRKIAVRCRGGMSDPVALARGVRQGCPLSPLLFNIFINDVLDGAAELGIPVGAAGEVIVSGLLFADDLVCTVPTRRKLVGMMEHLTTWLEENEMQVGIKKCGV 852
            TW E+  AL     +KSPGSDGIP++V+KL   +E   SP  K    +V ++     IP     S +V IPKKGD+ D NNYRGISL+ T  KVL  +I+ RLS    +  +    QAGFR +EEC  Q   L E+ +RRKI G  +++ F+D  KAYD VPH+ALL K+   G+ G++   I ALY + K+ VR    +S  V    GVRQGCP SPLLF+IFIND+LDG   + +P G   E+   GLLFADD V    +  +L   +E LT W  + EMQ+  +KCG+
Sbjct: 1080 TWTEICAALKSTPNNKSPGSDGIPSEVWKLVQNEEEPTSPFAKLFSKLVNKIWEDEKIPQKLDPSVIVPIPKKGDMRDPNNYRGISLIPTLSKVLSKIIARRLSKIDNKHDILVKEQAGFRSREECVAQATALYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKSSGIGGKLYRMIEALYRSPKMCVRVGDRLSKIVEYNCGVRQGCPASPLLFDIFINDLLDGIKGVKVP-GIDTEI--PGLLFADDAVVLAESPAELQIALEKLTVWSLKWEMQINQEKCGI 1367          
BLAST of mRNA_H-elongata_contig179052.4737.1 vs. uniprot
Match: A0A1R1Y7R2_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1Y7R2_9FUNG)

HSP 1 Score: 226 bits (577), Expect = 7.730e-64
Identity = 130/312 (41.67%), Postives = 183/312 (58.65%), Query Frame = 1
Query:    1 TWEEMLGALNRLKRHKSPGSDGIPADVYKLAIGDE--ISPMGKALMAVV-----GQVIPDVWMESTVVSIPKKGDLTDMNNYRGISLMGTGLKVLMVLISLRLSAAMEREGLFSPAQAGFRRQEECATQVACLLEITKRRKIRGKPSYLAFVDLKKAYDTVPHEALLAKLDYYGVRGRMLGFIWALYANRKIAVRCRGGMSDPVALARGVRQGCPLSPLLFNIFINDVLDGAAELGIPVGAAGEVIVSGLLFADDLVCTVPTRRKLVGMMEHLTTWLEENEMQVGIKKCGV-----------TVVGKKMTAV 882
            +W E+  AL     +KSPGSDGIP++V+K+   ++   SP+ K ++ ++      + IP     S V+ IPKKGD+ D NNYRGISL+ T  KVL  +I+ RL     +  + +  QAGFR +EEC  Q   L E+ +RRKI G  +++ F+D  KAYD VPHEALL K+   G+ G++   I ALY + K+ VR    +S  V    GVRQGCP SP+LF+I+IND+LDG   + IP     E  + GLLFADD V    +  +L   +E LT W ++ EMQ+   KCG+           T++GK +T V
Sbjct:  394 SWAEICAALKSTPNNKSPGSDGIPSEVWKMVQYEDEPTSPLAKLILRLITGIWDAEKIPKQLDPSVVIPIPKKGDIRDPNNYRGISLIPTLSKVLSKIIARRLCKIDNKYSILAKEQAGFRTREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEALLRKIKTAGIGGKLYRVIEALYRSPKMCVRVGDRLSKTVDYNCGVRQGCPASPMLFDIYINDLLDGIKGVKIP---GIEECIPGLLFADDAVVLAESPAELQIALEKLTAWSQKWEMQINQDKCGIMGINSSTGMLFTIMGKPITQV 702          
BLAST of mRNA_H-elongata_contig179052.4737.1 vs. uniprot
Match: A0A1R1X7T5_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X7T5_9FUNG)

HSP 1 Score: 227 bits (578), Expect = 1.000e-63
Identity = 125/292 (42.81%), Postives = 180/292 (61.64%), Query Frame = 1
Query:    1 TWEEMLGALNRLKRHKSPGSDGIPADVYKLAIGDEI---SPMGKALMAVVGQV-----IPDVWMESTVVSIPKKGDLTDMNNYRGISLMGTGLKVLMVLISLRLSAAMEREGLFSPAQAGFRRQEECATQVACLLEITKRRKIRGKPSYLAFVDLKKAYDTVPHEALLAKLDYYGVRGRMLGFIWALYANRKIAVRCRGGMSDPVALARGVRQGCPLSPLLFNIFINDVLDGAAELGIPVGAAGEVIVSGLLFADDLVCTVPTRRKLVGMMEHLTTWLEENEMQVGIKKCGV 852
            +W E+  AL     +KSPGSDGIP++V+KL + +EI   SP+ K +  ++ ++     +P     S VV IPKKGD+ D NNYRGISL+ T  KV+  +++ RL A   +  + +  QAGFR +EEC  Q   L E+ +RRKI G  +++ F+D  KAYD VPH+ALL K+   G+  ++   I ALY + K+ VR  G +S  V    GVRQGCP SPLLF+I+IND+L G   + IP     E ++SGLLFADD V    +  +L   +E ++ W ++ EMQ+  +KCG+
Sbjct:  632 SWAEICDALKTTPNNKSPGSDGIPSEVWKL-VQNEIEPTSPLAKVISKIINRIWDSENMPKQMDPSVVVPIPKKGDMRDPNNYRGISLIPTLAKVISKIVARRLCAIDNKYEILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKTAGIGSKLYRIIEALYRSPKMCVRVGGKLSKLVEYNCGVRQGCPASPLLFDIYINDLLHGLKGVEIP---GTEAMISGLLFADDAVVLAESPAELQIALEKISAWSQKWEMQINQEKCGI 919          
BLAST of mRNA_H-elongata_contig179052.4737.1 vs. uniprot
Match: L7JRS9_TRAHO (RNA-directed DNA polymerase, Non LTR Retrotransposon n=1 Tax=Trachipleistophora hominis TaxID=72359 RepID=L7JRS9_TRAHO)

HSP 1 Score: 221 bits (562), Expect = 5.060e-63
Identity = 122/299 (40.80%), Postives = 175/299 (58.53%), Query Frame = 1
Query:    4 WEEMLGALNRLKRHKSPGSDGIPADVYKLAIGD-EIS-PMGKALMAVVGQV-----IPDVWMESTVVSIPKKGDLTDMNNYRGISLMGTGLKVLMVLISLRLSAAMEREGLFSPAQAGFRRQEECATQVACLLEITKRRKIRGKPSYLAFVDLKKAYDTVPHEALLAKLDYYGVRGRMLGFIWALYANRKIAVRCRGGMSDPVALARGVRQGCPLSPLLFNIFINDVLDGAAELGIPVGAAGEVIVSGLLFADDLVCTVPTRRKLVGMMEHLTTWLEENEMQVGIKKCGVTVVGKKMTA 879
            W E+   L  ++R K+PG DGIP D YK A  D E+  P+ + L  ++ +      IPD W E+ +V IPKKGD++  +NYRGISL+ T  K+   +++ R+S   E   +    QAGFRR EEC  Q   L+EI KRR++ G+ +Y+ F+D  KAYD VPH ALL K+   G+ G++LGF  ALY + + +VR     S+      GV+QGCP SP+LFNI+IND+ +G + + +  GA     + GLLFADD V    +   L   +  L  W  + +M+V I KCG  + G +  A
Sbjct:   14 WSEVRLTLKSVRRGKAPGVDGIPYDFYKCAQDDIELEHPLSRTLYLLIHRSFMTGKIPDRWNEAIIVPIPKKGDMSRTDNYRGISLINTVCKIATKIVAERISRICEANNILINEQAGFRRLEECVAQATSLVEILKRRELEGQTTYVVFIDFTKAYDRVPHGALLHKMKMLGLNGKLLGFTEALYRSPRASVRVGEDTSECFEYQIGVKQGCPASPILFNIYINDLFEGLSGIELEPGAKP---IPGLLFADDAVILAESLAALESDVRKLEEWCNKWKMRVNIDKCGFMIFGDETVA 309          
BLAST of mRNA_H-elongata_contig179052.4737.1 vs. uniprot
Match: A0A1R1YD24_9FUNG (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YD24_9FUNG)

HSP 1 Score: 221 bits (562), Expect = 7.430e-63
Identity = 122/291 (41.92%), Postives = 173/291 (59.45%), Query Frame = 1
Query:    1 TWEEMLGALNRLKRHKSPGSDGIPADVYKLAIGDE--ISPMGKALMAVVGQV-----IPDVWMESTVVSIPKKGDLTDMNNYRGISLMGTGLKVLMVLISLRLSAAMEREGLFSPAQAGFRRQEECATQVACLLEITKRRKIRGKPSYLAFVDLKKAYDTVPHEALLAKLDYYGVRGRMLGFIWALYANRKIAVRCRGGMSDPVALARGVRQGCPLSPLLFNIFINDVLDGAAELGIPVGAAGEVIVSGLLFADDLVCTVPTRRKLVGMMEHLTTWLEENEMQVGIKKCGV 852
            +W E+  AL     +KSPGSDGIP++V+KL   ++   SP  K    ++  +     +P     S VV IPKKGD+ D NNYRGISL+ T  KV+  +++ RL A   +  + +  QAGFR +EEC  Q   L E+ +RRKI G  +++ F+D  KAYD VPH+ALL K+   G+  ++   I ALY + K+ VR    +S  V    GVRQGCP SPLLF+I+IND+L G   + IP     E  +SGLLFADD V    +  +L   +E ++ W ++ EMQ+  +KCG+
Sbjct:  306 SWAEICDALKTTPNNKSPGSDGIPSEVWKLVQNEKEPTSPFAKVTSRIINGIWDSENMPKQMDPSVVVPIPKKGDMRDPNNYRGISLIPTLAKVISKIVARRLCAIDNKYEILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKTAGIGSKLYRIIEALYRSPKMCVRVGDKLSKLVEYNCGVRQGCPASPLLFDIYINDLLHGLKGVEIP---GTEATISGLLFADDAVVLAESPSELQIALEKISAWSQKWEMQINQEKCGI 593          
BLAST of mRNA_H-elongata_contig179052.4737.1 vs. uniprot
Match: A0A1R0GP03_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0GP03_9FUNG)

HSP 1 Score: 222 bits (565), Expect = 2.780e-62
Identity = 131/296 (44.26%), Postives = 177/296 (59.80%), Query Frame = 1
Query:    4 WEEMLGALNRLKRHKSPGSDGIPADVYKLAIGDEI--SPMGKALMAVVGQV-----IPDVWMESTVVSIPKKGDLTDMNNYRGISLMGTGLKVLMVLISLRLSAAMEREGLFSPAQAGFRRQEECATQVACLLEITKRRKIRGKPSYLAFVDLKKAYDTVPHEALLAKLDYYGVRGRMLGFIWALYANRKIAVRCRGGMSDPVALARGVRQGCPLSPLLFNIFINDVLDGAAELGIPVGAAGEVIVSGLLFADDLVCTVPTRRKLVGMMEHLTTWLEENEMQVGIKKCGVTVVGKK 870
            WE++  ALN    +K+PG DGIP++V+K    +EI  S + K L  VV ++     IP+    S VV IPKKGDL D NNYRGISL+ T +K++  + + +LS    +  +    QAGFR +EEC  Q   L EI +RRKI+G P+++ F+D  KAYD VPH+ALL KL   G+ G +   I ALY + KI VR    +S  V    GVRQGCP SP+LF+++IND+ +     GI V   GE I  GLLFADD V    +  KL    E ++ W ++ EMQV   KCGV  +G +
Sbjct:  352 WEDIKKALNNTPSNKAPGVDGIPSEVWKTVQDEEIPTSNLAKLLYKVVKRIWNMAYIPEKLNTSIVVPIPKKGDLRDPNNYRGISLIPTLVKIVAKVAASKLSFLDLKYNILVKEQAGFRSREECVAQATVLYEIVRRRKIKGLPTWIGFIDFAKAYDRVPHQALLQKLKIQGIGGHLHKVISALYKSPKICVRFGSYLSPVVEYNCGVRQGCPASPILFDLYINDLFENIK--GITVPEIGEKI-KGLLFADDAVVFADSPAKLQIAFEKVSQWAKKWEMQVNASKCGVMGIGSQ 644          
BLAST of mRNA_H-elongata_contig179052.4737.1 vs. uniprot
Match: A0A1R1YAQ4_9FUNG (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YAQ4_9FUNG)

HSP 1 Score: 221 bits (563), Expect = 6.660e-62
Identity = 126/291 (43.30%), Postives = 175/291 (60.14%), Query Frame = 1
Query:    1 TWEEMLGALNRLKRHKSPGSDGIPADVYKLAIGDE--ISPMGKALMAVVGQV-----IPDVWMESTVVSIPKKGDLTDMNNYRGISLMGTGLKVLMVLISLRLSAAMEREGLFSPAQAGFRRQEECATQVACLLEITKRRKIRGKPSYLAFVDLKKAYDTVPHEALLAKLDYYGVRGRMLGFIWALYANRKIAVRCRGGMSDPVALARGVRQGCPLSPLLFNIFINDVLDGAAELGIPVGAAGEVIVSGLLFADDLVCTVPTRRKLVGMMEHLTTWLEENEMQVGIKKCGV 852
            +W E+  AL     +KSPGSDGIP++ +KL   ++   SP  K L+ ++  +     IP     S VV IPKKGD+ + NNYRGISL+ T  KV+  +IS RL     +  + +  QAGFR +EEC  Q   L E+ +RRKI G  +++ F+D  KAYD VPH+ALL K+   G+RG++   I ALY + K+ VR    +S  V    GVRQGCP SPLLF+IFIND+L G   + IP G   E+  +GLLFADD V    +  +L   +E L+ W  + EM++  +KCG+
Sbjct:  456 SWTEIRAALKSTPNNKSPGSDGIPSEAWKLVQDEDEPTSPFAKLLLRLINGIWDAEKIPKQLDPSVVVPIPKKGDMRESNNYRGISLIPTLSKVVSKIISRRLCKIDNKYNILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKNSGIRGKLYRMIEALYRSPKMCVRVGDRLSKIVEYNCGVRQGCPASPLLFDIFINDLLGGIKGVKIP-GIDTEI--AGLLFADDAVVLADSPAELQIALEKLSAWSHKWEMKINQEKCGI 743          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179052.4737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE2.540e-10763.18Reverse transcriptase domain-containing protein n=... [more]
A0A7S1SJ55_9CHLO2.350e-7144.19Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
L7JX89_TRAHO1.270e-6643.00RNA-directed DNA polymerase, Non LTR Retrotranspos... [more]
A0A1R1YP44_9FUNG3.220e-6445.02LINE-1 retrotransposable element ORF2 protein (Fra... [more]
A0A1R1Y7R2_9FUNG7.730e-6441.67Putative RNA-directed DNA polymerase from transpos... [more]
A0A1R1X7T5_9FUNG1.000e-6342.81RNA-directed DNA polymerase from mobile element jo... [more]
L7JRS9_TRAHO5.060e-6340.80RNA-directed DNA polymerase, Non LTR Retrotranspos... [more]
A0A1R1YD24_9FUNG7.430e-6341.92RNA-directed DNA polymerase from mobile element jo... [more]
A0A1R0GP03_9FUNG2.780e-6244.26RNA-directed DNA polymerase from mobile element jo... [more]
A0A1R1YAQ4_9FUNG6.660e-6243.30RNA-directed DNA polymerase from mobile element jo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179052contigH-elongata_contig179052:145..1041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.3
Seed ortholog evalue1.6e-43
Seed eggNOG ortholog45157.CMQ083CT
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size882
Cds size870
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179052.4737.1prot_H-elongata_contig179052.4737.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179052 157..1041 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930033.363296-UTR-H-elongata_contig179052:144..1561622930033.363296-UTR-H-elongata_contig179052:144..156Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig179052 145..156 +
1691679254.7497115-UTR-H-elongata_contig179052:144..1561691679254.7497115-UTR-H-elongata_contig179052:144..156Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig179052 145..156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930033.3938277-CDS-H-elongata_contig179052:156..2821622930033.3938277-CDS-H-elongata_contig179052:156..282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179052 157..282 +
1691679254.7592497-CDS-H-elongata_contig179052:156..2821691679254.7592497-CDS-H-elongata_contig179052:156..282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179052 157..282 +
1622930033.4084353-CDS-H-elongata_contig179052:297..10411622930033.4084353-CDS-H-elongata_contig179052:297..1041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179052 298..1041 +
1691679254.7674363-CDS-H-elongata_contig179052:297..10411691679254.7674363-CDS-H-elongata_contig179052:297..1041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179052 298..1041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179052.4737.1

>prot_H-elongata_contig179052.4737.1 ID=prot_H-elongata_contig179052.4737.1|Name=mRNA_H-elongata_contig179052.4737.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=290bp
MLGALNRLKRHKSPGSDGIPADVYKLAIGDEISPMGKALMAVVGQVIPDV
WMESTVVSIPKKGDLTDMNNYRGISLMGTGLKVLMVLISLRLSAAMEREG
LFSPAQAGFRRQEECATQVACLLEITKRRKIRGKPSYLAFVDLKKAYDTV
PHEALLAKLDYYGVRGRMLGFIWALYANRKIAVRCRGGMSDPVALARGVR
QGCPLSPLLFNIFINDVLDGAAELGIPVGAAGEVIVSGLLFADDLVCTVP
TRRKLVGMMEHLTTWLEENEMQVGIKKCGVTVVGKKMTAV
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mRNA from alignment at H-elongata_contig179052:145..1041+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179052.4737.1 ID=mRNA_H-elongata_contig179052.4737.1|Name=mRNA_H-elongata_contig179052.4737.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=897bp|location=Sequence derived from alignment at H-elongata_contig179052:145..1041+ (Himanthalia elongata Himel1 dioecious)
ACGTGGGAAGAGATGTTAGGTGCACTCAACCGATTAAAGCGGCATAAATC CCCCGGTAGTGATGGAATCCCGGCTGATGTATATAAACTGGCAATTGGAG ACGAGATTTCGCCCATGGGGAAAGCACTAATGGCAGTAGTCAACCTCATG TAGGTGGGACAGGTGATACCCGATGTATGGATGGAATCGACTGTAGTATC AATCCCCAAGAAAGGAGATCTCACGGATATGAATAATTACCGCGGCATCT CCCTAATGGGAACGGGCTTGAAGGTCCTAATGGTCCTAATAAGCTTACGA TTGAGTGCTGCGATGGAAAGAGAAGGGCTCTTTAGCCCTGCACAAGCAGG GTTTCGACGACAGGAGGAGTGCGCGACACAAGTGGCATGCCTATTGGAGA TAACAAAGCGCAGGAAGATAAGGGGGAAGCCTTCCTATCTAGCGTTCGTT GACCTTAAGAAAGCATACGATACGGTGCCGCATGAGGCACTCCTTGCGAA GTTGGATTACTACGGGGTAAGAGGCCGAATGCTTGGATTTATTTGGGCGC TCTATGCGAATAGAAAAATCGCCGTCCGCTGCCGAGGAGGCATGTCGGAC CCCGTCGCACTTGCGCGAGGGGTGCGCCAAGGGTGCCCACTTTCACCACT ACTGTTCAATATATTTATCAACGATGTATTGGACGGAGCAGCGGAGTTGG GTATCCCGGTGGGTGCAGCAGGAGAGGTTATAGTGTCTGGATTACTTTTT GCCGACGACTTGGTATGCACGGTGCCTACGAGGCGAAAGCTGGTTGGAAT GATGGAGCACCTAACTACGTGGTTGGAGGAGAACGAGATGCAAGTGGGCA TCAAGAAGTGCGGAGTTACGGTGGTGGGGAAGAAGATGACAGCGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig179052:145..1041+

>mRNA_H-elongata_contig179052.4737.1 ID=mRNA_H-elongata_contig179052.4737.1|Name=mRNA_H-elongata_contig179052.4737.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1740bp|location=Sequence derived from alignment at H-elongata_contig179052:145..1041+ (Himanthalia elongata Himel1 dioecious)
ATGTTAGGTGCACTCAACCGATTAAAGCGGCATAAATCCCCCGGTAGTGA
TGGAATCCCGGCTGATGTATATAAACTGGCAATTGGAGACGAGATTTCGC
CCATGGGGAAAGCACTAATGGCAGTAATGTTAGGTGCACTCAACCGATTA
AAGCGGCATAAATCCCCCGGTAGTGATGGAATCCCGGCTGATGTATATAA
ACTGGCAATTGGAGACGAGATTTCGCCCATGGGGAAAGCACTAATGGCAG
TAGTGGGACAGGTGATACCCGATGTATGGATGGAATCGACTGTAGTATCA
ATCCCCAAGAAAGGAGATCTCACGGATATGAATAATTACCGCGGCATCTC
CCTAATGGGAACGGGCTTGAAGGTCCTAATGGTCCTAATAAGCTTACGAT
TGAGTGCTGCGATGGAAAGAGAAGGGCTCTTTAGCCCTGCACAAGCAGGG
TTTCGACGACAGGAGGAGTGCGCGACACAAGTGGCATGCCTATTGGAGAT
AACAAAGCGCAGGAAGATAAGGGGGAAGCCTTCCTATCTAGCGTTCGTTG
ACCTTAAGAAAGCATACGATACGGTGCCGCATGAGGCACTCCTTGCGAAG
TTGGATTACTACGGGGTAAGAGGCCGAATGCTTGGATTTATTTGGGCGCT
CTATGCGAATAGAAAAATCGCCGTCCGCTGCCGAGGAGGCATGTCGGACC
CCGTCGCACTTGCGCGAGGGGTGCGCCAAGGGTGCCCACTTTCACCACTA
CTGTTCAATATATTTATCAACGATGTATTGGACGGAGCAGCGGAGTTGGG
TATCCCGGTGGGTGCAGCAGGAGAGGTTATAGTGTCTGGATTACTTTTTG
CCGACGACTTGGTATGCACGGTGCCTACGAGGCGAAAGCTGGTTGGAATG
ATGGAGCACCTAACTACGTGGTTGGAGGAGAACGAGATGCAAGTGGGCAT
CAAGAAGTGCGGAGTTACGGTGGTGGGGAAGAAGATGACAGCGGTGGTGG
GACAGGTGATACCCGATGTATGGATGGAATCGACTGTAGTATCAATCCCC
AAGAAAGGAGATCTCACGGATATGAATAATTACCGCGGCATCTCCCTAAT
GGGAACGGGCTTGAAGGTCCTAATGGTCCTAATAAGCTTACGATTGAGTG
CTGCGATGGAAAGAGAAGGGCTCTTTAGCCCTGCACAAGCAGGGTTTCGA
CGACAGGAGGAGTGCGCGACACAAGTGGCATGCCTATTGGAGATAACAAA
GCGCAGGAAGATAAGGGGGAAGCCTTCCTATCTAGCGTTCGTTGACCTTA
AGAAAGCATACGATACGGTGCCGCATGAGGCACTCCTTGCGAAGTTGGAT
TACTACGGGGTAAGAGGCCGAATGCTTGGATTTATTTGGGCGCTCTATGC
GAATAGAAAAATCGCCGTCCGCTGCCGAGGAGGCATGTCGGACCCCGTCG
CACTTGCGCGAGGGGTGCGCCAAGGGTGCCCACTTTCACCACTACTGTTC
AATATATTTATCAACGATGTATTGGACGGAGCAGCGGAGTTGGGTATCCC
GGTGGGTGCAGCAGGAGAGGTTATAGTGTCTGGATTACTTTTTGCCGACG
ACTTGGTATGCACGGTGCCTACGAGGCGAAAGCTGGTTGGAATGATGGAG
CACCTAACTACGTGGTTGGAGGAGAACGAGATGCAAGTGGGCATCAAGAA
GTGCGGAGTTACGGTGGTGGGGAAGAAGATGACAGCGGTG
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