mRNA_H-elongata_contig178975.4730.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: A0A6H5LD91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD91_9PHAE) HSP 1 Score: 102 bits (254), Expect = 2.090e-24 Identity = 61/140 (43.57%), Postives = 80/140 (57.14%), Query Frame = 1
Query: 31 MIDDLLKGSTRGKLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDILALRQKLLEISIKNRTT----------------QNLKKLDLHASHRYLKPFLTDNSKAARLAWALRWVRQSA 402
M+ +LLKGS G L+ GD ++ + + V WK YN +KEAG PDL NKR N+G+ +DI L++ L +I +KNRTT NL L L + R+LKP L+D+ KA RLAWALRWVR SA
Sbjct: 1 MVAELLKGSNNGALSHGDVKRVVAIYKQTPKTVSKYWKLYNQKKEAGEEDPDLHNKRKGNSGQKGLDIATLKEALQDIHLKNRTTIRSIAAALGIPKSTLFDNLNNLGLRSCSRFLKPLLSDDWKAQRLAWALRWVRSSA 140
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: W2PII8_PHYPN (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PII8_PHYPN) HSP 1 Score: 63.9 bits (154), Expect = 2.120e-9 Identity = 48/173 (27.75%), Postives = 91/173 (52.60%), Query Frame = 1
Query: 4 NLNENQRRAMIDDLLKGSTRGKLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDILALRQKLLEISIKNRT---------------TQNLKK---LDLHASHRYLKPFLTDNSKAARLAWALRWVRQSANGTRVFDDMKRVVMVDEKWFYK 468
NL +++RR ++D+LLK S G+L +G + A++ CS + +W R+ + EA + + +++ +N+GR + + K+ + I+ R Q L + L +H++H + P+LT+N+K R+ L ++ ++ +F+ M VV VDEKWFY+
Sbjct: 5 NLTDDERRQILDELLKQSVGGELPRGVQARVAREFRCSDASIGRIWHRFR-ETEANDGLEEWKSRIKQNSGRKKKNRDEIAAKIRAVPIEERKPYRPLAHAAGISKYLVQALIREGVLKVHSTH--ITPYLTENNKFRRIEHVLTYIDPTS---LMFEPMYDVVHVDEKWFYE 171
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: A0A6H5KHK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK2_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 5.020e-8 Identity = 44/136 (32.35%), Postives = 68/136 (50.00%), Query Frame = 1
Query: 1 KNLNENQRRAMIDDLLKGSTRGKLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDILALRQKLLEISIKNRTTQ----------------NLKKLDLHA-SHRYLKPFLTDNSK 357
KN NE + +I LL GS G L G ++A +K + +W RY+ Q +AG+A P + N+R N+GR + + L+++ +I + RTTQ NLK L L A S+ +KP+L S+
Sbjct: 14 KNFNEEETEEVIRYLLPGSKNGVLRYGAFKEAGEKFGWYWETIKRLWMRYDTQHKAGVASPQIDNRRKGNSGRQGIPLEELKERPRDIPLNERTTQRRLAAALVIPKSTLHRNLKALGLRAHSNALIKPYLQPASQ 149
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: W2PYW1_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2PYW1_PHYPN) HSP 1 Score: 58.2 bits (139), Expect = 5.980e-7 Identity = 57/171 (33.33%), Postives = 80/171 (46.78%), Query Frame = 1
Query: 1 KNLNENQRRAMIDDLLKGSTRG--KLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDILALRQKLLEISIKNR---------------TTQNLKKLDLHASHRYLKPFLTDNSKAARLAWALRWVRQSANGTRVFDDMKRVVMVDEKWF 462
+NL ++RRAM+D LLK G KL + AA + R V +WKR E G V D+ +++ GR D A +++ EI + R T L K D + S +KP LTD +K RL + VR +NG +FDDM VV ++ KWF
Sbjct: 50 RNLTYDERRAMLDFLLKRRIEGSTKLMRHAVTDAATEFGVDRRTVSRLWKRAVQSLENGDEVCDVASRKVGRRGRRKRDWSAELERVKEIPLAQRGSIRALATAVGIPKTTLYELLKEDGNPSINAIKPSLTDKNKLERLRYCADKVR--SNG--LFDDMYNVVHINMKWF 216
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: A0A6P6TEQ3_COFAR (uncharacterized protein LOC113700698 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6TEQ3_COFAR) HSP 1 Score: 57.8 bits (138), Expect = 8.330e-7 Identity = 49/171 (28.65%), Postives = 80/171 (46.78%), Query Frame = 1
Query: 1 KNLNENQRRAMIDDLLKGSTRGKLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDI-------LALRQ--------KLLEISIKNRTTQNLKKLDLHASHRYLKPFLTDNSKAARLAWALRWVRQSANGTRV-FDDMKRVVMVDEKWFY 465
KN +RA+ + LLK GKL+KG + A+ D S V +W A +P+L K K GR + + + R+ K L++S K+ + +K+ L +KP+L+ +SK ARL + L + + ++ FD+M + +DEKWFY
Sbjct: 94 KNFTTALKRAIYEMLLKECENGKLSKGVISRVAECFDISTRSVSRIWHEGKCTATAYGHLPNLSPKLVKRVGRKKIQVNLEDIKDIPFRRRTNIRSLAKALDVS-KSSLHRRIKEESLRPHSNPVKPYLSTDSKKARLQFCLSMISEGTLASKFSFDNMHDRIHIDEKWFY 263
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: W2PA89_PHYPN (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PA89_PHYPN) HSP 1 Score: 57.0 bits (136), Expect = 1.500e-6 Identity = 42/145 (28.97%), Postives = 71/145 (48.97%), Query Frame = 1
Query: 4 NLNENQRRAMIDDLLKGSTRGKLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDILALRQKLLEISIKNRTTQNLKKLDLHASHRY----------------LKPFLTDNSKAARLAWALRWV 390
NLN+ +R+A+ID+LL+ S GKL +G K A + + +WKRY A EAG+ + +++R ++ GR + LR+KL + +++R + AS +KP LT +K R+ AL ++
Sbjct: 57 NLNDVERKAVIDELLRISKNGKLPRGANAKVASGVERDPSTISTIWKRYVAAVEAGVVGGEWKSRRKQHCGRKRKNRDELREKLARVPMEDRAVERRAAAAAGASRHLVRQAVREGMLKRRAVLIKPALTPENKLRRVEHALSFI 201
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: A0A425CHQ7_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CHQ7_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 3.780e-6 Identity = 56/171 (32.75%), Postives = 77/171 (45.03%), Query Frame = 1
Query: 1 KNLNENQRRAMIDDLLKGSTRG--KLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDILALRQKLLEISIKNR---------------TTQNLKKLDLHASHRYLKPFLTDNSKAARLAWALRWVRQSANGTRVFDDMKRVVMVDEKWF 462
KNL +RR+M+D LLK G KL + AA K R V +WKR E G V D+ +++ GR D +++ EI + R T L K D + +KP LTD +K RL + VR +NG +FDDM VV ++ KWF
Sbjct: 54 KNLTYEERRSMLDFLLKRRVEGTSKLMRHAVTDAATKFCVDRRTVSRLWKRALQSLENGDEVCDVASRKIGRRGRRKRDWSVELERVKEIPLAQRGSIRALATAVGIPKTTLYELLKEDGGPTINSIKPSLTDKNKLERLRYCANKVR--SNG--LFDDMYNVVHINMKWF 220
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: A0A3M6VT37_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VT37_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 4.230e-6 Identity = 56/171 (32.75%), Postives = 77/171 (45.03%), Query Frame = 1
Query: 1 KNLNENQRRAMIDDLLKGSTRG--KLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDILALRQKLLEISIKNR---------------TTQNLKKLDLHASHRYLKPFLTDNSKAARLAWALRWVRQSANGTRVFDDMKRVVMVDEKWF 462
KNL +RR+M+D LLK G KL + AA K R V +WKR E G V D+ +++ GR D +++ EI + R T L K D + +KP LTD +K RL + VR +NG +FDDM VV ++ KWF
Sbjct: 519 KNLTYEERRSMLDFLLKRRVEGTSKLMRHAVTDAATKFCVDRRTVSRLWKRALQSLENGDEVCDVASRKIGRRGRRKRDWSVELERVKEIPLAQRGSIRALATAVGIPKTTLYELLKEDGGPTINSIKPSLTDKNKLERLRYCANKVR--SNG--LFDDMYNVVHINMKWF 685
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: A0A0P1B6M8_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B6M8_PLAHL) HSP 1 Score: 55.5 bits (132), Expect = 5.090e-6 Identity = 56/171 (32.75%), Postives = 78/171 (45.61%), Query Frame = 1
Query: 1 KNLNENQRRAMIDDLLKGSTRG--KLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDILALRQKLLEISIKNR---------------TTQNLKKLDLHASHRYLKPFLTDNSKAARLAWALRWVRQSANGTRVFDDMKRVVMVDEKWF 462
+NL +RRAM+D LLK G KL + AA + R V +WKR E G V D+ +++ GR D A +++ EI + R T L K D + +KP LTD +K RL + + VR NG +FDDM VV ++ KWF
Sbjct: 45 RNLTYEERRAMLDFLLKRRVEGSTKLMRHAVTDAATEFAVDRRTVSRLWKRAVQSLENGDEVCDVASRKVGRRGRRKRDWSAELKRVKEIPLTQRGSIRALASAVGIPKTTLYELLKDDGNPVLNAIKPSLTDKNKLERLRYCIDKVRP--NG--LFDDMHNVVHINMKWF 211 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig178975.4730.1 >prot_H-elongata_contig178975.4730.1 ID=prot_H-elongata_contig178975.4730.1|Name=mRNA_H-elongata_contig178975.4730.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp MIDDLLKGSTRGKLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVback to top mRNA from alignment at H-elongata_contig178975:545..1066+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig178975.4730.1 ID=mRNA_H-elongata_contig178975.4730.1|Name=mRNA_H-elongata_contig178975.4730.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=522bp|location=Sequence derived from alignment at H-elongata_contig178975:545..1066+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig178975:545..1066+ >mRNA_H-elongata_contig178975.4730.1 ID=mRNA_H-elongata_contig178975.4730.1|Name=mRNA_H-elongata_contig178975.4730.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig178975:545..1066+ (Himanthalia elongata Himel1 dioecious)back to top |