mRNA_H-elongata_contig178975.4730.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig178975.4730.1
Unique NamemRNA_H-elongata_contig178975.4730.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: A0A6H5LD91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD91_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.090e-24
Identity = 61/140 (43.57%), Postives = 80/140 (57.14%), Query Frame = 1
Query:   31 MIDDLLKGSTRGKLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDILALRQKLLEISIKNRTT----------------QNLKKLDLHASHRYLKPFLTDNSKAARLAWALRWVRQSA 402
            M+ +LLKGS  G L+ GD ++    +  +   V   WK YN +KEAG   PDL NKR  N+G+  +DI  L++ L +I +KNRTT                 NL  L L +  R+LKP L+D+ KA RLAWALRWVR SA
Sbjct:    1 MVAELLKGSNNGALSHGDVKRVVAIYKQTPKTVSKYWKLYNQKKEAGEEDPDLHNKRKGNSGQKGLDIATLKEALQDIHLKNRTTIRSIAAALGIPKSTLFDNLNNLGLRSCSRFLKPLLSDDWKAQRLAWALRWVRSSA 140          
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: W2PII8_PHYPN (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PII8_PHYPN)

HSP 1 Score: 63.9 bits (154), Expect = 2.120e-9
Identity = 48/173 (27.75%), Postives = 91/173 (52.60%), Query Frame = 1
Query:    4 NLNENQRRAMIDDLLKGSTRGKLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDILALRQKLLEISIKNRT---------------TQNLKK---LDLHASHRYLKPFLTDNSKAARLAWALRWVRQSANGTRVFDDMKRVVMVDEKWFYK 468
            NL +++RR ++D+LLK S  G+L +G   + A++  CS   +  +W R+  + EA   + + +++  +N+GR   +   +  K+  + I+ R                 Q L +   L +H++H  + P+LT+N+K  R+   L ++  ++    +F+ M  VV VDEKWFY+
Sbjct:    5 NLTDDERRQILDELLKQSVGGELPRGVQARVAREFRCSDASIGRIWHRFR-ETEANDGLEEWKSRIKQNSGRKKKNRDEIAAKIRAVPIEERKPYRPLAHAAGISKYLVQALIREGVLKVHSTH--ITPYLTENNKFRRIEHVLTYIDPTS---LMFEPMYDVVHVDEKWFYE 171          
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: A0A6H5KHK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK2_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 5.020e-8
Identity = 44/136 (32.35%), Postives = 68/136 (50.00%), Query Frame = 1
Query:    1 KNLNENQRRAMIDDLLKGSTRGKLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDILALRQKLLEISIKNRTTQ----------------NLKKLDLHA-SHRYLKPFLTDNSK 357
            KN NE +   +I  LL GS  G L  G  ++A +K       +  +W RY+ Q +AG+A P + N+R  N+GR  + +  L+++  +I +  RTTQ                NLK L L A S+  +KP+L   S+
Sbjct:   14 KNFNEEETEEVIRYLLPGSKNGVLRYGAFKEAGEKFGWYWETIKRLWMRYDTQHKAGVASPQIDNRRKGNSGRQGIPLEELKERPRDIPLNERTTQRRLAAALVIPKSTLHRNLKALGLRAHSNALIKPYLQPASQ 149          
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: W2PYW1_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2PYW1_PHYPN)

HSP 1 Score: 58.2 bits (139), Expect = 5.980e-7
Identity = 57/171 (33.33%), Postives = 80/171 (46.78%), Query Frame = 1
Query:    1 KNLNENQRRAMIDDLLKGSTRG--KLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDILALRQKLLEISIKNR---------------TTQNLKKLDLHASHRYLKPFLTDNSKAARLAWALRWVRQSANGTRVFDDMKRVVMVDEKWF 462
            +NL  ++RRAM+D LLK    G  KL +     AA +    R  V  +WKR     E G  V D+ +++    GR   D  A  +++ EI +  R               T   L K D + S   +KP LTD +K  RL +    VR  +NG  +FDDM  VV ++ KWF
Sbjct:   50 RNLTYDERRAMLDFLLKRRIEGSTKLMRHAVTDAATEFGVDRRTVSRLWKRAVQSLENGDEVCDVASRKVGRRGRRKRDWSAELERVKEIPLAQRGSIRALATAVGIPKTTLYELLKEDGNPSINAIKPSLTDKNKLERLRYCADKVR--SNG--LFDDMYNVVHINMKWF 216          
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: A0A6P6TEQ3_COFAR (uncharacterized protein LOC113700698 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6TEQ3_COFAR)

HSP 1 Score: 57.8 bits (138), Expect = 8.330e-7
Identity = 49/171 (28.65%), Postives = 80/171 (46.78%), Query Frame = 1
Query:    1 KNLNENQRRAMIDDLLKGSTRGKLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDI-------LALRQ--------KLLEISIKNRTTQNLKKLDLHASHRYLKPFLTDNSKAARLAWALRWVRQSANGTRV-FDDMKRVVMVDEKWFY 465
            KN     +RA+ + LLK    GKL+KG   + A+  D S   V  +W        A   +P+L  K  K  GR  + +       +  R+        K L++S K+   + +K+  L      +KP+L+ +SK ARL + L  + +    ++  FD+M   + +DEKWFY
Sbjct:   94 KNFTTALKRAIYEMLLKECENGKLSKGVISRVAECFDISTRSVSRIWHEGKCTATAYGHLPNLSPKLVKRVGRKKIQVNLEDIKDIPFRRRTNIRSLAKALDVS-KSSLHRRIKEESLRPHSNPVKPYLSTDSKKARLQFCLSMISEGTLASKFSFDNMHDRIHIDEKWFY 263          
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: W2PA89_PHYPN (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PA89_PHYPN)

HSP 1 Score: 57.0 bits (136), Expect = 1.500e-6
Identity = 42/145 (28.97%), Postives = 71/145 (48.97%), Query Frame = 1
Query:    4 NLNENQRRAMIDDLLKGSTRGKLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDILALRQKLLEISIKNRTTQNLKKLDLHASHRY----------------LKPFLTDNSKAARLAWALRWV 390
            NLN+ +R+A+ID+LL+ S  GKL +G   K A   +     +  +WKRY A  EAG+   + +++R ++ GR   +   LR+KL  + +++R  +        AS                   +KP LT  +K  R+  AL ++
Sbjct:   57 NLNDVERKAVIDELLRISKNGKLPRGANAKVASGVERDPSTISTIWKRYVAAVEAGVVGGEWKSRRKQHCGRKRKNRDELREKLARVPMEDRAVERRAAAAAGASRHLVRQAVREGMLKRRAVLIKPALTPENKLRRVEHALSFI 201          
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: A0A425CHQ7_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CHQ7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.780e-6
Identity = 56/171 (32.75%), Postives = 77/171 (45.03%), Query Frame = 1
Query:    1 KNLNENQRRAMIDDLLKGSTRG--KLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDILALRQKLLEISIKNR---------------TTQNLKKLDLHASHRYLKPFLTDNSKAARLAWALRWVRQSANGTRVFDDMKRVVMVDEKWF 462
            KNL   +RR+M+D LLK    G  KL +     AA K    R  V  +WKR     E G  V D+ +++    GR   D     +++ EI +  R               T   L K D   +   +KP LTD +K  RL +    VR  +NG  +FDDM  VV ++ KWF
Sbjct:   54 KNLTYEERRSMLDFLLKRRVEGTSKLMRHAVTDAATKFCVDRRTVSRLWKRALQSLENGDEVCDVASRKIGRRGRRKRDWSVELERVKEIPLAQRGSIRALATAVGIPKTTLYELLKEDGGPTINSIKPSLTDKNKLERLRYCANKVR--SNG--LFDDMYNVVHINMKWF 220          
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: A0A3M6VT37_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VT37_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 4.230e-6
Identity = 56/171 (32.75%), Postives = 77/171 (45.03%), Query Frame = 1
Query:    1 KNLNENQRRAMIDDLLKGSTRG--KLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDILALRQKLLEISIKNR---------------TTQNLKKLDLHASHRYLKPFLTDNSKAARLAWALRWVRQSANGTRVFDDMKRVVMVDEKWF 462
            KNL   +RR+M+D LLK    G  KL +     AA K    R  V  +WKR     E G  V D+ +++    GR   D     +++ EI +  R               T   L K D   +   +KP LTD +K  RL +    VR  +NG  +FDDM  VV ++ KWF
Sbjct:  519 KNLTYEERRSMLDFLLKRRVEGTSKLMRHAVTDAATKFCVDRRTVSRLWKRALQSLENGDEVCDVASRKIGRRGRRKRDWSVELERVKEIPLAQRGSIRALATAVGIPKTTLYELLKEDGGPTINSIKPSLTDKNKLERLRYCANKVR--SNG--LFDDMYNVVHINMKWF 685          
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: A0A0P1B6M8_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B6M8_PLAHL)

HSP 1 Score: 55.5 bits (132), Expect = 5.090e-6
Identity = 56/171 (32.75%), Postives = 78/171 (45.61%), Query Frame = 1
Query:    1 KNLNENQRRAMIDDLLKGSTRG--KLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDILALRQKLLEISIKNR---------------TTQNLKKLDLHASHRYLKPFLTDNSKAARLAWALRWVRQSANGTRVFDDMKRVVMVDEKWF 462
            +NL   +RRAM+D LLK    G  KL +     AA +    R  V  +WKR     E G  V D+ +++    GR   D  A  +++ EI +  R               T   L K D +     +KP LTD +K  RL + +  VR   NG  +FDDM  VV ++ KWF
Sbjct:   45 RNLTYEERRAMLDFLLKRRVEGSTKLMRHAVTDAATEFAVDRRTVSRLWKRAVQSLENGDEVCDVASRKVGRRGRRKRDWSAELKRVKEIPLTQRGSIRALASAVGIPKTTLYELLKDDGNPVLNAIKPSLTDKNKLERLRYCIDKVRP--NG--LFDDMHNVVHINMKWF 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5LD91_9PHAE2.090e-2443.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W2PII8_PHYPN2.120e-927.75Uncharacterized protein n=3 Tax=Phytophthora paras... [more]
A0A6H5KHK2_9PHAE5.020e-832.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W2PYW1_PHYPN5.980e-733.33Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
A0A6P6TEQ3_COFAR8.330e-728.65uncharacterized protein LOC113700698 n=2 Tax=Coffe... [more]
W2PA89_PHYPN1.500e-628.97Uncharacterized protein n=6 Tax=Phytophthora paras... [more]
A0A425CHQ7_9STRA3.780e-632.75Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A3M6VT37_9STRA4.230e-632.75Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A0P1B6M8_PLAHL5.090e-632.75Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig178975contigH-elongata_contig178975:545..1066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.9
Seed ortholog evalue7.1e-08
Seed eggNOG ortholog161934.XP_010677755.1
EggNOG OGs2EA2H@1,2SGC1@2759,380US@33090
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size474
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig178975.4730.1prot_H-elongata_contig178975.4730.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig178975 575..1066 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930032.597097-UTR-H-elongata_contig178975:544..5741622930032.597097-UTR-H-elongata_contig178975:544..574Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig178975 545..574 +
1691679254.397881-UTR-H-elongata_contig178975:544..5741691679254.397881-UTR-H-elongata_contig178975:544..574Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig178975 545..574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930032.6200716-CDS-H-elongata_contig178975:574..8311622930032.6200716-CDS-H-elongata_contig178975:574..831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178975 575..831 +
1691679254.4127514-CDS-H-elongata_contig178975:574..8311691679254.4127514-CDS-H-elongata_contig178975:574..831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178975 575..831 +
1622930032.6366267-CDS-H-elongata_contig178975:879..10661622930032.6366267-CDS-H-elongata_contig178975:879..1066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178975 880..1066 +
1691679254.4213376-CDS-H-elongata_contig178975:879..10661691679254.4213376-CDS-H-elongata_contig178975:879..1066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178975 880..1066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig178975.4730.1

>prot_H-elongata_contig178975.4730.1 ID=prot_H-elongata_contig178975.4730.1|Name=mRNA_H-elongata_contig178975.4730.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
MIDDLLKGSTRGKLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAV
PDLRNKRHKNAGRTCVDILALRQKLLEISIKNRTTQNLKKLDLHASHRYL
KPFLTDNSKAARLAWALRWVRQSANGTRVFDDMKRVVMVDEKWFYKY*
back to top

mRNA from alignment at H-elongata_contig178975:545..1066+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig178975.4730.1 ID=mRNA_H-elongata_contig178975.4730.1|Name=mRNA_H-elongata_contig178975.4730.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=522bp|location=Sequence derived from alignment at H-elongata_contig178975:545..1066+ (Himanthalia elongata Himel1 dioecious)
AAGAATCTGAACGAAAATCAGAGACGTGCCATGATTGACGACCTACTGAA GGGCAGCACTCGAGGAAAATTGGCCAAGGGCGACACCCAGAAAGCCGCAC AGAAGCATGATTGCTCACGTTACCAAGTTTGGGCCGTTTGGAAACGGTAC AATGCGCAGAAGGAAGCTGGCATCGCTGTACCAGACTTGCGCAACAAGAG GCACAAAAACGCGGGCAGAACATGTGTGGATATTTTAGCCCTGAGGCAGA AGTTGCTCGAGATCTCCATCAAGAACCGGACCACCCAGTGAGCTGTTGCT GCCAAACTAGAGATTCCGCAGTTGACGCTGGCAAGGAACTTGAAAAAGCT TGACTTGCATGCTTCCCACCGATACCTCAAGCCTTTTCTCACAGACAACA GCAAAGCTGCTAGACTGGCTTGGGCTCTACGGTGGGTGCGGCAGTCCGCC AACGGCACCCGAGTGTTCGACGACATGAAGAGGGTCGTCATGGTGGATGA AAAATGGTTTTACAAGTACTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig178975:545..1066+

>mRNA_H-elongata_contig178975.4730.1 ID=mRNA_H-elongata_contig178975.4730.1|Name=mRNA_H-elongata_contig178975.4730.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig178975:545..1066+ (Himanthalia elongata Himel1 dioecious)
ATGATTGACGACCTACTGAAGGGCAGCACTCGAGGAAAATTGGCCAAGGG
CGACACCCAGAAAGCCGCACAGAAGCATGATTGCTCACGTTACCAAGTTT
GGGCCGTTTGGAAACGGTACAATGCGCAGAAGGAAGCTGGCATCGCTGTA
CCAGACTTGCGCAACAAGAGGCACAAAAACGCGGGCAGAACATGTGTGGA
TATTTTAGCCCTGAGGCAGAAGTTGCTCGAGATCTCCATCAAGAACCGGA
CCACCCAATGATTGACGACCTACTGAAGGGCAGCACTCGAGGAAAATTGG
CCAAGGGCGACACCCAGAAAGCCGCACAGAAGCATGATTGCTCACGTTAC
CAAGTTTGGGCCGTTTGGAAACGGTACAATGCGCAGAAGGAAGCTGGCAT
CGCTGTACCAGACTTGCGCAACAAGAGGCACAAAAACGCGGGCAGAACAT
GTGTGGATATTTTAGCCCTGAGGCAGAAGTTGCTCGAGATCTCCATCAAG
AACCGGACCACCCAGAACTTGAAAAAGCTTGACTTGCATGCTTCCCACCG
ATACCTCAAGCCTTTTCTCACAGACAACAGCAAAGCTGCTAGACTGGCTT
GGGCTCTACGGTGGGTGCGGCAGTCCGCCAACGGCACCCGAGTGTTCGAC
GACATGAAGAGGGTCGTCATGGTGGATGAAAAATGGTTTTACAAGTACTA
GGAACTTGAAAAAGCTTGACTTGCATGCTTCCCACCGATACCTCAAGCCT
TTTCTCACAGACAACAGCAAAGCTGCTAGACTGGCTTGGGCTCTACGGTG
GGTGCGGCAGTCCGCCAACGGCACCCGAGTGTTCGACGACATGAAGAGGG
TCGTCATGGTGGATGAAAAATGGTTTTACAAGTACTAG
back to top