mRNA_H-elongata_contig178828.4727.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig178828.4727.1
Unique NamemRNA_H-elongata_contig178828.4727.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178828.4727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig178828contigH-elongata_contig178828:433..1271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size839
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig178828.4727.1prot_H-elongata_contig178828.4727.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig178828 815..1261 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930032.3836453-UTR-H-elongata_contig178828:432..8141622930032.3836453-UTR-H-elongata_contig178828:432..814Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig178828 433..814 +
1691679254.307863-UTR-H-elongata_contig178828:432..8141691679254.307863-UTR-H-elongata_contig178828:432..814Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig178828 433..814 +
1622930032.413063-UTR-H-elongata_contig178828:1261..12711622930032.413063-UTR-H-elongata_contig178828:1261..1271Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig178828 1262..1271 +
1691679254.3257113-UTR-H-elongata_contig178828:1261..12711691679254.3257113-UTR-H-elongata_contig178828:1261..1271Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig178828 1262..1271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930032.399334-CDS-H-elongata_contig178828:814..12611622930032.399334-CDS-H-elongata_contig178828:814..1261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178828 815..1261 +
1691679254.3164637-CDS-H-elongata_contig178828:814..12611691679254.3164637-CDS-H-elongata_contig178828:814..1261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178828 815..1261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig178828.4727.1

>prot_H-elongata_contig178828.4727.1 ID=prot_H-elongata_contig178828.4727.1|Name=mRNA_H-elongata_contig178828.4727.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
MDQLLYASLYDVIYTPTDGTSYIIKGNEQFSVPVPGVDELILLYCSVFFK
KRRRRKKRLWIICKTPLCDRWSCFQDPNRAKLSFPRPSTIALLLGQATFS
PKRKTPRPSGTLQMGASSPARSTGCPLPLTSQPHVAAAVSVSVPGKTS*
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mRNA from alignment at H-elongata_contig178828:433..1271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig178828.4727.1 ID=mRNA_H-elongata_contig178828.4727.1|Name=mRNA_H-elongata_contig178828.4727.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=839bp|location=Sequence derived from alignment at H-elongata_contig178828:433..1271+ (Himanthalia elongata Himel1 dioecious)
AATTATGTCACACGTATAGCAGAGTAAGATCAACCGGATTTGGTTGCCTC
CTGCTCGTGGTCAGCTGAAAAGGGAAAAATAAATTCCCGTCTGTCCCCGT
TCGCGCCTGAGAATTTGATCTTTCGAGGCGGGTTCAGCAGTCCCATCCAG
CGCCAGCCTGCTCATTCTCTCAACGCAGGCTGAATCTGGTGCGTACTCCC
GGAATCCTCTCGTTTTCCGCGACGACGTCCATCTCTACGGTCAACCGCCA
TGGGGCCAGTCCCGATTTCATCAGGTCATGCAATTGCGTACCAATGGCGC
TTACTACCGAGAGTCCGTCGGCACTGAGCCATTAGTCCTCAAGGTAGCTT
AAGTAACGGGTGCAGCCTATTCAGGTAACCCCATGGACCAATTATTGTAC
GCCTCTCTCTATGATGTCATATACACACCAACAGACGGTACATCTTATAT
AATAAAGGGAAACGAGCAGTTTTCAGTTCCGGTGCCAGGAGTGGATGAGT
TAATACTGCTCTACTGCTCTGTGTTTTTTAAGAAAAGAAGAAGAAGAAAA
AAAAGGCTTTGGATTATTTGTAAAACTCCCCTCTGCGACCGGTGGAGCTG
CTTCCAGGACCCCAACAGAGCGAAGCTCTCCTTTCCGCGCCCCTCCACCA
TCGCACTGTTGCTGGGACAAGCCACCTTTTCTCCAAAACGGAAAACCCCG
CGTCCCAGCGGTACACTGCAGATGGGCGCCTCGTCGCCGGCGCGGTCAAC
AGGGTGCCCTCTGCCCTTGACTTCCCAGCCTCACGTGGCAGCAGCCGTAT
CCGTATCCGTACCGGGAAAAACCTCGTGACGACAGTATA
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Coding sequence (CDS) from alignment at H-elongata_contig178828:433..1271+

>mRNA_H-elongata_contig178828.4727.1 ID=mRNA_H-elongata_contig178828.4727.1|Name=mRNA_H-elongata_contig178828.4727.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig178828:433..1271+ (Himanthalia elongata Himel1 dioecious)
ATGGACCAATTATTGTACGCCTCTCTCTATGATGTCATATACACACCAAC
AGACGGTACATCTTATATAATAAAGGGAAACGAGCAGTTTTCAGTTCCGG
TGCCAGGAGTGGATGAGTTAATACTGCTCTACTGCTCTGTGTTTTTTAAG
AAAAGAAGAAGAAGAAAAAAAAGGCTTTGGATTATTTGTAAAACTCCCCT
CTGCGACCGGTGGAGCTGCTTCCAGGACCCCAACAGAGCGAAGCTCTCCT
TTCCGCGCCCCTCCACCATCGCACTGTTGCTGGGACAAGCCACCTTTTCT
CCAAAACGGAAAACCCCGCGTCCCAGCGGTACACTGCAGATGGGCGCCTC
GTCGCCGGCGCGGTCAACAGGGTGCCCTCTGCCCTTGACTTCCCAGCCTC
ACGTGGCAGCAGCCGTATCCGTATCCGTACCGGGAAAAACCTCGTGAATG
GACCAATTATTGTACGCCTCTCTCTATGATGTCATATACACACCAACAGA
CGGTACATCTTATATAATAAAGGGAAACGAGCAGTTTTCAGTTCCGGTGC
CAGGAGTGGATGAGTTAATACTGCTCTACTGCTCTGTGTTTTTTAAGAAA
AGAAGAAGAAGAAAAAAAAGGCTTTGGATTATTTGTAAAACTCCCCTCTG
CGACCGGTGGAGCTGCTTCCAGGACCCCAACAGAGCGAAGCTCTCCTTTC
CGCGCCCCTCCACCATCGCACTGTTGCTGGGACAAGCCACCTTTTCTCCA
AAACGGAAAACCCCGCGTCCCAGCGGTACACTGCAGATGGGCGCCTCGTC
GCCGGCGCGGTCAACAGGGTGCCCTCTGCCCTTGACTTCCCAGCCTCACG
TGGCAGCAGCCGTATCCGTATCCGTACCGGGAAAAACCTCGTGA
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