mRNA_H-elongata_contig178818.4725.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig178818.4725.1
Unique NamemRNA_H-elongata_contig178818.4725.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig178818.4725.1 vs. uniprot
Match: D8LF95_ECTSI (H(+)-exporting diphosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF95_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 2.630e-31
Identity = 74/102 (72.55%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:   16 FSAMTMKAVGTAAMEMVQEVEIQFDEVRMCLVCDCVLGLTRKFEAKLL-RCTTERPDYQRCIAISTRAALKYMLAPGALVMLAPLVTGTFFGVLAVCGLLTG 318
            FSAMTMKAVGTAAMEMVQEVEIQFDE                   +LL   T+ERPDYQRCIAISTRAALKYM+ PGALVMLAPLV GTFFGV+AVCGLLTG
Sbjct:  537 FSAMTMKAVGTAAMEMVQEVEIQFDE-----------------NPRLLDEGTSERPDYQRCIAISTRAALKYMVPPGALVMLAPLVAGTFFGVMAVCGLLTG 621
[Close]
BLAST of mRNA_H-elongata_contig178818.4725.1 vs. uniprot
Match: A0A835YSH3_9STRA (H(+)-exporting diphosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSH3_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.010e-28
Identity = 71/101 (70.30%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:   16 FSAMTMKAVGTAAMEMVQEVEIQFDEVRMCLVCDCVLGLTRKFEAKLLRCTTERPDYQRCIAISTRAALKYMLAPGALVMLAPLVTGTFFGVLAVCGLLTG 318
            FSAMTMKAVGTAAMEMVQEV+ QF+     L  D                TTERPDYQRCIAISTRAALKYML PGALVMLAPLV GT FGV AVCGLLTG
Sbjct:  555 FSAMTMKAVGTAAMEMVQEVQQQFEANPRLLDED----------------TTERPDYQRCIAISTRAALKYMLPPGALVMLAPLVAGTLFGVYAVCGLLTG 639
[Close]
BLAST of mRNA_H-elongata_contig178818.4725.1 vs. uniprot
Match: A0A7S2Y359_9STRA (H(+)-exporting diphosphatase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y359_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.780e-23
Identity = 62/104 (59.62%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:   10 FRFSAMTMKAVGTAAMEMVQEVEIQFDEVRMCLVCDCVLGLTRKFEAKLL-RCTTERPDYQRCIAISTRAALKYMLAPGALVMLAPLVTGTFFGVLAVCGLLTG 318
            F FSA+TMK+VGTAAMEMV EVE QF E                 +  LL + +TERPDY RCI IST+A+LK M+APGALVML+PL+ G FFGV AVCG+LTG
Sbjct:  548 FWFSALTMKSVGTAAMEMVLEVERQFKE-----------------KPHLLDKNSTERPDYDRCIKISTQASLKRMIAPGALVMLSPLIAGIFFGVYAVCGVLTG 634
[Close]
BLAST of mRNA_H-elongata_contig178818.4725.1 vs. uniprot
Match: Q8VXC8_OCHDN (H(+)-exporting diphosphatase (Fragment) n=1 Tax=Ochromonas danica TaxID=2986 RepID=Q8VXC8_OCHDN)

HSP 1 Score: 95.5 bits (236), Expect = 2.410e-22
Identity = 58/102 (56.86%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:   16 FSAMTMKAVGTAAMEMVQEVEIQFDEVRMCLVCDCVLGLTRKFEAKLLRCT-TERPDYQRCIAISTRAALKYMLAPGALVMLAPLVTGTFFGVLAVCGLLTG 318
            FSA+TMK+VG AA+EMV+EV+ QF++                   +LL    T RPDY RC+AIST++AL+ M+APGALVMLAPLV GTFFGV AV GLLTG
Sbjct:   87 FSALTMKSVGDAAIEMVKEVQWQFEQ-----------------NPELLNPNGTARPDYSRCVAISTKSALREMIAPGALVMLAPLVAGTFFGVHAVYGLLTG 171
[Close]
BLAST of mRNA_H-elongata_contig178818.4725.1 vs. uniprot
Match: A0A6V1Q500_HETAK (H(+)-exporting diphosphatase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q500_HETAK)

HSP 1 Score: 99.0 bits (245), Expect = 7.850e-22
Identity = 58/101 (57.43%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:   16 FSAMTMKAVGTAAMEMVQEVEIQFDEVRMCLVCDCVLGLTRKFEAKLLRCTTERPDYQRCIAISTRAALKYMLAPGALVMLAPLVTGTFFGVLAVCGLLTG 318
            FSA+TMKAVGTAA +MV+E++ QF E    L  +                 TERPDY RCI ISTR++L YM+APGALVML+PLV GTF GV AVCG+LTG
Sbjct:  557 FSALTMKAVGTAAGDMVKEIQRQFAEKPHLLDAN----------------PTERPDYTRCIEISTRSSLSYMIAPGALVMLSPLVAGTFCGVYAVCGVLTG 641
[Close]
BLAST of mRNA_H-elongata_contig178818.4725.1 vs. uniprot
Match: A0A482RVD9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVD9_9ARCH)

HSP 1 Score: 92.0 bits (227), Expect = 4.890e-21
Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:   16 FSAMTMKAVGTAAMEMVQEVEIQFDEVRMCLVCDCVLGLTRKFEAKLLRCT-TERPDYQRCIAISTRAALKYMLAPGALVMLAPLVTGTFFGVLAVCGLLTG 318
            FSA+TMK+VG AA+EMV+EV+ QF++                   +LL    T RPDY RC+AIST++AL+ M+APGALVM++PL+TG+ FGV AV GLLTG
Sbjct:   20 FSALTMKSVGDAAIEMVKEVQFQFEQ-----------------NPELLNPNGTARPDYSRCVAISTKSALREMIAPGALVMVSPLITGSLFGVHAVYGLLTG 104
[Close]
BLAST of mRNA_H-elongata_contig178818.4725.1 vs. uniprot
Match: A0A7S2SG69_9STRA (H(+)-exporting diphosphatase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SG69_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.620e-20
Identity = 55/104 (52.88%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:   10 FRFSAMTMKAVGTAAMEMVQEVEIQFDEVRMCLVCDCVLGLTRKFEAKLLRCTTERPDYQRCIAISTRAALKYMLAPGALVMLAPLVTGTFFGVLAVCGLLTGE 321
            F F+AMTMK+VG AAM+MV EV+ QFDE    L  +                 TERPDY  CIAIST+A+LK M+ PGA+V+  PL+TG FFGV AV GLL G 
Sbjct:  147 FAFAAMTMKSVGVAAMQMVLEVQRQFDEKPHLLDAN----------------PTERPDYDACIAISTKASLKEMVPPGAMVIFTPLLTGIFFGVYAVSGLLVGS 234
[Close]
BLAST of mRNA_H-elongata_contig178818.4725.1 vs. uniprot
Match: B8BUE1_THAPS (H(+)-exporting diphosphatase n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8BUE1_THAPS)

HSP 1 Score: 95.1 bits (235), Expect = 1.740e-20
Identity = 57/104 (54.81%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:   10 FRFSAMTMKAVGTAAMEMVQEVEIQFDEVRMCLVCDCVLGLTRKFEAKLLRCTTERPDYQRCIAISTRAALKYMLAPGALVMLAPLVTGTFFGVLAVCGLLTGE 321
            F F+AMTMK+VG AAMEMV EV+ QFDE    L  +                 TERPDY  CI IST+A+LK M+APGA+V+L PL+TG FFGV AV GLL G 
Sbjct:  488 FAFAAMTMKSVGVAAMEMVLEVQRQFDEKPHLLDAN----------------PTERPDYDACIGISTKASLKEMVAPGAMVILTPLLTGIFFGVYAVSGLLVGS 575
[Close]
BLAST of mRNA_H-elongata_contig178818.4725.1 vs. uniprot
Match: A0A7S2II27_9STRA (H(+)-exporting diphosphatase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2II27_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.760e-20
Identity = 58/104 (55.77%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:   10 FRFSAMTMKAVGTAAMEMVQEVEIQFDEVRMCLVCDCVLGLTRKFEAKLLRCTTERPDYQRCIAISTRAALKYMLAPGALVMLAPLVTGTFFGVLAVCGLLTGE 321
            F F+AMTMK+VG AAMEMV EV+ QFDE    L  +                 TERPDY  CIAIST A+LK M+ PGA+VML PL+TG FFGV AV GLL G 
Sbjct:  562 FAFAAMTMKSVGLAAMEMVLEVQRQFDEKPHLLDAN----------------PTERPDYDACIAISTNASLKEMVPPGAMVMLTPLLTGIFFGVTAVSGLLVGS 649
[Close]
BLAST of mRNA_H-elongata_contig178818.4725.1 vs. uniprot
Match: A0A7S2RKF2_9STRA (H(+)-exporting diphosphatase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RKF2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.760e-20
Identity = 57/104 (54.81%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:   10 FRFSAMTMKAVGTAAMEMVQEVEIQFDEVRMCLVCDCVLGLTRKFEAKLLRCTTERPDYQRCIAISTRAALKYMLAPGALVMLAPLVTGTFFGVLAVCGLLTGE 321
            F F+AMTMK+VG AAMEMV EV+ QFDE    L  +                 TERPDY  CIAIST+A+L+ M+ PGA+V+L PL+TG FFGV AV GLLTG 
Sbjct:  564 FAFAAMTMKSVGVAAMEMVFEVQRQFDENPHLLDAN----------------PTERPDYDACIAISTKASLREMVPPGAMVILTPLLTGIFFGVFAVSGLLTGS 651
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178818.4725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF95_ECTSI2.630e-3172.55H(+)-exporting diphosphatase n=2 Tax=Ectocarpus Ta... [more]
A0A835YSH3_9STRA1.010e-2870.30H(+)-exporting diphosphatase n=1 Tax=Tribonema min... [more]
A0A7S2Y359_9STRA4.780e-2359.62H(+)-exporting diphosphatase n=1 Tax=Fibrocapsa ja... [more]
Q8VXC8_OCHDN2.410e-2256.86H(+)-exporting diphosphatase (Fragment) n=1 Tax=Oc... [more]
A0A6V1Q500_HETAK7.850e-2257.43H(+)-exporting diphosphatase n=1 Tax=Heterosigma a... [more]
A0A482RVD9_9ARCH4.890e-2152.94Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2SG69_9STRA1.620e-2052.88H(+)-exporting diphosphatase (Fragment) n=1 Tax=Rh... [more]
B8BUE1_THAPS1.740e-2054.81H(+)-exporting diphosphatase n=2 Tax=Thalassiosira... [more]
A0A7S2II27_9STRA1.760e-2055.77H(+)-exporting diphosphatase n=1 Tax=Helicotheca t... [more]
A0A7S2RKF2_9STRA1.760e-2054.81H(+)-exporting diphosphatase n=1 Tax=Eucampia anta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig178818contigH-elongata_contig178818:248..1053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue7.7e-25
Seed eggNOG ortholog2880.D8LF95
Preferred nameAVP1
KEGG koko:K01507
KEGG Pathwayko00190,map00190
GOsGO:0000325,GO:0001101,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0009414,GO:0009415,GO:0009507,GO:0009526,GO:0009536,GO:0009628,GO:0009651,GO:0009678,GO:0009705,GO:0009914,GO:0009926,GO:0009941,GO:0010008,GO:0010035,GO:0010248,GO:0010817,GO:0012505,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0022804,GO:0022857,GO:0031090,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0032501,GO:0032502,GO:0034220,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044433,GO:0044434,GO:0044435,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0060918,GO:0065007,GO:0065008,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099402,GO:1901700
EggNOG free text desc.hydrogen-translocating pyrophosphatase activity
EggNOG OGs2QPJC@2759,COG3808@1
Ec32 ortholog descriptioninorganic pyrophosphatase
Ec32 orthologEc-01_004120.1
EC3.6.1.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal anchor
Exons2
Model size336
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig178818.4725.1prot_H-elongata_contig178818.4725.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig178818 248..1029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930032.1372108-CDS-H-elongata_contig178818:247..4201622930032.1372108-CDS-H-elongata_contig178818:247..420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178818 248..420 -
1691679254.2068717-CDS-H-elongata_contig178818:247..4201691679254.2068717-CDS-H-elongata_contig178818:247..420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178818 248..420 -
1622930032.15401-CDS-H-elongata_contig178818:890..10291622930032.15401-CDS-H-elongata_contig178818:890..1029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178818 891..1029 -
1691679254.2193995-CDS-H-elongata_contig178818:890..10291691679254.2193995-CDS-H-elongata_contig178818:890..1029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178818 891..1029 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930032.171982-UTR-H-elongata_contig178818:1029..10531622930032.171982-UTR-H-elongata_contig178818:1029..1053Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig178818 1030..1053 -
1691679254.2271097-UTR-H-elongata_contig178818:1029..10531691679254.2271097-UTR-H-elongata_contig178818:1029..1053Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig178818 1030..1053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig178818.4725.1

>prot_H-elongata_contig178818.4725.1 ID=prot_H-elongata_contig178818.4725.1|Name=mRNA_H-elongata_contig178818.4725.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MTMKAVGTAAMEMVQEVEIQFDEVRMCLVCDCVLGLTRKFEAKLLRCTTE
RPDYQRCIAISTRAALKYMLAPGALVMLAPLVTGTFFGVLAVCGLLTGES
RIF*
back to top

mRNA from alignment at H-elongata_contig178818:248..1053-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig178818.4725.1 ID=mRNA_H-elongata_contig178818.4725.1|Name=mRNA_H-elongata_contig178818.4725.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=806bp|location=Sequence derived from alignment at H-elongata_contig178818:248..1053- (Himanthalia elongata Himel1 dioecious)
ATTTTTTTTTTCAGGTTCTCGGCGATGACGATGAAGGCTGTAGGTACCGC
CGCCATGGAAATGGTGCAGGAGGTCGAGATCCAGTTTGATGAGGTGCGTA
TGTGCCTTGTGTGTGACTGTGTACTTGGCCTGACCCGAAAATTTGAAGCA
AAGCTCCTACGGTGTGGCTTTCCTTATCGATTTATCATGTGTGAAGATTT
TGTACTGAAAGGTAGTATTGTACATATTCGAACCCGACGATAGTTGGTCC
CCTGGACTTCACCTGTCATGGTGCTGAAAAGGCGTGAATGTCCGGAGGGT
TGGAATGAGTTCAAGGTTTTCTTGAATAAAAGCAAACGCTTTCGAACGAA
ATGATTATTAATGCCAAAGCGTTTTACCCTCTCCTTTCTATATTTATCCG
AAAATCAATCTGCCGTTCGCCACCTCACGCACGAATATATCAGTGAGGTG
TTGGGAATGTCTAAGGATATAACGCCAATGCTTTAAACAAGAAACATGAG
GGGAGCCATTTTTTTCCATCTCTGCTAGTCTAGAAATATTCCCAATTTCG
TGTACATTCCACGCTGCTACTCCTGGCTTCCTTGCCTCCTCTTGTCCTTG
CGTTTGCGCAGAACCCGCGCCTCCTGGACGAAGGCACCACCGAGCGCCCT
GACTACCAGCGCTGCATCGCCATCTCCACCCGCGCCGCCCTCAAGTACAT
GTTGGCTCCCGGAGCCCTCGTGATGCTCGCTCCGCTTGTGACCGGCACGT
TCTTCGGCGTCTTGGCTGTCTGCGGCTTGCTCACTGGTGAATCGAGAATC
TTTTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig178818:248..1053-

>mRNA_H-elongata_contig178818.4725.1 ID=mRNA_H-elongata_contig178818.4725.1|Name=mRNA_H-elongata_contig178818.4725.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig178818:248..1053- (Himanthalia elongata Himel1 dioecious)
ATGACGATGAAGGCTGTAGGTACCGCCGCCATGGAAATGGTGCAGGAGGT
CGAGATCCAGTTTGATGAGGTGCGTATGTGCCTTGTGTGTGACTGTGTAC
TTGGCCTGACCCGAAAATTTGAAGCAAAGCTCCTACGGTATGACGATGAA
GGCTGTAGGTACCGCCGCCATGGAAATGGTGCAGGAGGTCGAGATCCAGT
TTGATGAGGTGCGTATGTGCCTTGTGTGTGACTGTGTACTTGGCCTGACC
CGAAAATTTGAAGCAAAGCTCCTACGGTGCACCACCGAGCGCCCTGACTA
CCAGCGCTGCATCGCCATCTCCACCCGCGCCGCCCTCAAGTACATGTTGG
CTCCCGGAGCCCTCGTGATGCTCGCTCCGCTTGTGACCGGCACGTTCTTC
GGCGTCTTGGCTGTCTGCGGCTTGCTCACTGGTGAATCGAGAATCTTTTG
AGCACCACCGAGCGCCCTGACTACCAGCGCTGCATCGCCATCTCCACCCG
CGCCGCCCTCAAGTACATGTTGGCTCCCGGAGCCCTCGTGATGCTCGCTC
CGCTTGTGACCGGCACGTTCTTCGGCGTCTTGGCTGTCTGCGGCTTGCTC
ACTGGTGAATCGAGAATCTTTTGA
back to top