mRNA_H-elongata_contig17880.4723.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17880.4723.1 vs. uniprot
Match: D7FP11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP11_ECTSI) HSP 1 Score: 171 bits (434), Expect = 2.700e-42 Identity = 121/362 (33.43%), Postives = 163/362 (45.03%), Query Frame = 1
Query: 16 RISERDKLLLYALSLGAMAGSIIFWDGVYTIFEQHVWDNSLRYHLVCIALGGVGVVWVMTSEEEHGAAGDCNGDGDSKEEVGSEEAKMNAVDATVRMSADIESGNDNGNGSVRNEQAGAWRMTNSTATAETRLETRQARVTADIAMLPLLEKIALYAKGFLGNICGVVFWYGLEHVITDQSPDTVWTGLVSYAAGIMLLMLIWRWKENCGMDS----------------------DEERNKHDVMTSMAT----GATEHD---PG--ELNKAVTLVVGPQLDEP------------RFCW--PPWVTTTLEIAGVVAAWTGVEWYIWDDNYIPRTLYRDPLYIVVGLAVLAVTGTFLELSGT 966
R+ RD+ YA SL A+ GSI+FWDGVY + ++H W+ +L Y+LVC +LGG G+VWVMTSE+E D +R G+D G G A+A R R +R+ + LYAK N+CGVVFW G+E +I D P+ WTGLV + GI +L+ R N G++ D + D+ ++ +D PG L A T G + P R C P WVTT E+ GVV AWTG+EWY+W+ +YIP + RD YI VGL +L TGTF L+GT
Sbjct: 66 RLRWRDEAKFYARSLLAIVGSILFWDGVYDLCDEHTWEGTLTYNLVCASLGGAGMVWVMTSEDE---------------------------DERMR-------GDDIGGGPAA-----------MMASAANRSGGRSSRLGPG-------NRGRLYAKALFCNVCGVVFWKGVEEIIEDNGPNKDWTGLVFFVIGISILIATDRLSMNSGLEDGLPPAVDIQAGPAACTIETAAWDASSSNPDLRAPSSSPLLLDVVVNDLSCPGCSRLVAAPTSFGGGNVRSPCGGEGAGSRRRGRGCVEVPRWVTTAAELTGVVFAWTGIEWYVWEGDYIPDSALRDLGYIAVGLGILVGTGTFFNLAGT 375 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17880.4723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17880.4723.1 >prot_H-elongata_contig17880.4723.1 ID=prot_H-elongata_contig17880.4723.1|Name=mRNA_H-elongata_contig17880.4723.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=400bp MHEKRISERDKLLLYALSLGAMAGSIIFWDGVYTIFEQHVWDNSLRYHLVback to top mRNA from alignment at H-elongata_contig17880:900..6860+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17880.4723.1 ID=mRNA_H-elongata_contig17880.4723.1|Name=mRNA_H-elongata_contig17880.4723.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5961bp|location=Sequence derived from alignment at H-elongata_contig17880:900..6860+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17880:900..6860+ >mRNA_H-elongata_contig17880.4723.1 ID=mRNA_H-elongata_contig17880.4723.1|Name=mRNA_H-elongata_contig17880.4723.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2400bp|location=Sequence derived from alignment at H-elongata_contig17880:900..6860+ (Himanthalia elongata Himel1 dioecious)back to top |