mRNA_H-elongata_contig17877.4722.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17877.4722.1
Unique NamemRNA_H-elongata_contig17877.4722.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17877.4722.1 vs. uniprot
Match: A0A6H5JTK7_9PHAE (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK7_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 1.220e-63
Identity = 140/319 (43.89%), Postives = 180/319 (56.43%), Query Frame = 1 
Query:   13 SSQSTSAVCAESATTTCAITQWTIAS-DVE-TLPTYYTYDEAENPGQITEVWLRV-NCSTE-CESYPAEVLVVCGDGSTSGRSSPTPSPVTATSTDCGIVNVAGTSGGELDGTYYDDGSPLQGEVTQFNGYDA--SDLTSNGNTLVMNSTTGDCPSPSSTVTETDGDCLWRQWWITPGDDNFDAFEYFTFDEADHPVDITPGGLWHTLKTIEKPYAGAINITCAPEVTPAL-----PTPTPTTSISVVNRTDKGTSEDTSYIPAIIGG---------------VMGGVAVLGFLGFVAYRRMNIPFSPPLPPPSYNDLV 891
            SS +  A CA+S  + C + +W IA  D + TLPTY+ YDEA +P  I EVWLR+ NC T  C+S PAE+ ++CGDG+T+  S  TP+P + T++DCG++ VAGTSG E DG YYDDGS L  +VTQ+ GYD    +L SNG  +V N     C + SS+ T  D  C WRQWWI           YFT+DEADHPVDI  G LW+T      PY GA+ +TCAP  TP L     P PT     +      +GT    +  P + GG               V GGVA+L  LG VAY+  +       PPPSY+D +
Sbjct:  313 SSSAAPAQCADSTASDCNVNRWQIAPLDADSTLPTYWVYDEALHPSTINEVWLRLDNCGTGGCQSSPAELTILCGDGTTASGSG-TPAPASVTASDCGVIEVAGTSGAESDGFYYDDGSELGDDVTQYGGYDVVNGELMSNGRAVVANRVNSTCATTSSS-TGADA-CSWRQWWIEASSSG--TVSYFTYDEADHPVDIAAGALWYTSDGSIMPYDGAVAVTCAPATTPTLTPATSPVPTTDDDGTATRMPVEGTHSPGTAAPVVPGGEXXXXXXXXXXXXXXVAGGVALLAILGAVAYKFKD-------PPPSYDDAM 619
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BLAST of mRNA_H-elongata_contig17877.4722.1 vs. uniprot
Match: D7G7P1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7P1_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 4.370e-58
Identity = 140/336 (41.67%), Postives = 175/336 (52.08%), Query Frame = 1 
Query:    1 ATIASSQSTSAVCAESATTTCAITQWTIA-SDVE-TLPTYYTYDEAENPGQITEVWLRV-NCSTE-CESYPAEVLVVCGDGSTSGRSSPTPSPVTATSTDCGIVNVAGTSGGELDGTYYDDGSPLQGEVTQFNGYDA--SDLTSNGNTLVMNSTTGDCPSPSSTVTETDGD-CLWRQWWITPGDDNFDAFEYFTFDEADHPVDITPGGLWHTLKTIEKPYAGAINITCAPEVTPALPTPTPTTSISVVNRTDKGTSEDTS-------------YIPAIIGG-------------------VMGGVAVLGFLGFVAYRRMNIPFSPPLPPPSYNDLV 891
            AT+ASS +  A CA+S+ + C + +W I  SD + TLPTY  YDEA +P  I EVWLR+ NC T  C+S PAE+ +VCGDG+T+  S  TP+PV+ T++DC  + VAGTSG E DG YYDDGS L   VTQ+ GYD    +LTSNG  +V N     C   ++T T T  D C WRQWWI P         YFT+DEA HPVDI  G LW+T      PY G + +TCAP  TP                 D G  + T+               P + GG                   V GGVA+L  LG VAY+             SY+DLV
Sbjct:   33 ATLASSDAP-AQCADSSASDCTVNRWQITPSDADSTLPTYVVYDEALHPSTINEVWLRLDNCGTGGCQSSPAELTIVCGDGTTAAGSG-TPAPVSVTASDCEAIEVAGTSGAESDGFYYDDGSELGDGVTQYVGYDVVNGELTSNGRAVVANRVDSTC---ATTTTSTGADACSWRQWWIEPSSSG--TVSYFTYDEAGHPVDIAAGTLWYTSDDTVVPYDGDVVVTCAPATTPXXXXXXXXXXXXXXXXXDGGNDDGTATRMPVEGTHAPGTVAPVVAGGEDGDGDXXXXXXXXXXXXXVAGGVALLAILGAVAYKLKXXXXXXX----SYDDLV 357
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17877.4722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTK7_9PHAE1.220e-6343.89F5/8 type C domain-containing protein n=1 Tax=Ecto... [more]
D7G7P1_ECTSI4.370e-5841.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17877contigH-elongata_contig17877:2098..4339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size903
Cds size903
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17877.4722.1prot_H-elongata_contig17877.4722.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17877 2098..4339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930031.8200202-CDS-H-elongata_contig17877:2097..22641622930031.8200202-CDS-H-elongata_contig17877:2097..2264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17877 2098..2264 +
1691679254.0826237-CDS-H-elongata_contig17877:2097..22641691679254.0826237-CDS-H-elongata_contig17877:2097..2264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17877 2098..2264 +
1622930031.8357625-CDS-H-elongata_contig17877:2789..30351622930031.8357625-CDS-H-elongata_contig17877:2789..3035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17877 2790..3035 +
1691679254.0916238-CDS-H-elongata_contig17877:2789..30351691679254.0916238-CDS-H-elongata_contig17877:2789..3035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17877 2790..3035 +
1622930031.8545039-CDS-H-elongata_contig17877:3269..34701622930031.8545039-CDS-H-elongata_contig17877:3269..3470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17877 3270..3470 +
1691679254.1016066-CDS-H-elongata_contig17877:3269..34701691679254.1016066-CDS-H-elongata_contig17877:3269..3470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17877 3270..3470 +
1622930031.8686612-CDS-H-elongata_contig17877:4050..43391622930031.8686612-CDS-H-elongata_contig17877:4050..4339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17877 4051..4339 +
1691679254.1110983-CDS-H-elongata_contig17877:4050..43391691679254.1110983-CDS-H-elongata_contig17877:4050..4339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17877 4051..4339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17877.4722.1

>prot_H-elongata_contig17877.4722.1 ID=prot_H-elongata_contig17877.4722.1|Name=mRNA_H-elongata_contig17877.4722.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=301bp
ATIASSQSTSAVCAESATTTCAITQWTIASDVETLPTYYTYDEAENPGQI
TEVWLRVNCSTECESYPAEVLVVCGDGSTSGRSSPTPSPVTATSTDCGIV
NVAGTSGGELDGTYYDDGSPLQGEVTQFNGYDASDLTSNGNTLVMNSTTG
DCPSPSSTVTETDGDCLWRQWWITPGDDNFDAFEYFTFDEADHPVDITPG
GLWHTLKTIEKPYAGAINITCAPEVTPALPTPTPTTSISVVNRTDKGTSE
DTSYIPAIIGGVMGGVAVLGFLGFVAYRRMNIPFSPPLPPPSYNDLVQGS
*
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mRNA from alignment at H-elongata_contig17877:2098..4339+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17877.4722.1 ID=mRNA_H-elongata_contig17877.4722.1|Name=mRNA_H-elongata_contig17877.4722.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2242bp|location=Sequence derived from alignment at H-elongata_contig17877:2098..4339+ (Himanthalia elongata Himel1 dioecious)
GCGACCATAGCGTCATCCCAAAGCACGTCGGCAGTATGTGCCGAAAGCGC
AACCACGACTTGCGCGATAACCCAGTGGACCATCGCGTCCGACGTGGAGA
CGTTGCCGACATACTACACGTATGATGAGGCCGAGAATCCTGGTCAAATT
ACCGAGGTCTGGCTAAGGTAAGACGACGAAAAGCGGCTCAAAATAAGGTA
AGATGAAAATAAAGAGGTATCCATATATGTATAATGACAAATGGGATATA
TTATATATACAAAATAAAGCAGAGGCGCTATTCTAGAAAGTTGTACGGAA
ATAGGGAGATATAAGAAGAGTACAAGGTGACCAGTCATAACAGAACATTT
GAAGACGGAGTGGGTCTTGATGCTTGGCTGGTGGCTGCTAGCGAGTGCTC
ACGCTGCCAACGGCCACGACCTTTGAGATTTTTGCATTTGAGGCCTTGTG
GGGTCCAGCTCGGTACCGTCGGATGCAGTCAACTGTTGTGGCCGGACGAC
AGCCTTTTCCCCCCGTCACACACACGTAGTGAAGGCGGCGGTTTGTTGAC
TGTATTCGCGAAATTCCAGGCCTGCTGTCAAGAAATAGAAATGCGCGCTT
AGCAGTCCCGCTGCGCCCTGCCCTACCCCGCTCTGTCTTTTCCTCGCAAC
GTTCTCGGGGTGCTGATGACAACTGGTTTATCTTTTCTTCAGGGTGAACT
GCAGCACAGAGTGTGAGAGCTATCCCGCGGAAGTATTGGTGGTGTGTGGA
GATGGCTCGACCTCTGGCAGGTCGTCGCCCACCCCGTCGCCTGTCACGGC
GACGTCGACAGACTGCGGGATAGTCAATGTGGCAGGAACTTCAGGGGGTG
AGTTGGACGGAACCTACTACGACGACGGCAGTCCTCTGCAGGGTGAAGTG
ACCCAGTTCAACGGGTATGACGCTAGTGATCTGACGAGGTGAGATGCTCT
AACACCCCCTTATTTCCCTCTTCTTTTGTCTTTTGTATTAGGTGCTGGTC
TGGTAAGCAAAAGCCTCCCCGCGAGTCACATGACGTTCTCGAGTCTTGTA
TGAACGTTCTGAGGGCCTGGACCTCTCCCGACACCCCAAGGGTGAATGTA
CCACAGGATACGTGTCACCCTCACCTTCCGGAGCGCTTTTCCATGTTGCA
TGCCTTGTTCGCGACTCTCCAGCAACGGAAACACCCTTGTGATGAACTCG
ACCACCGGGGACTGTCCCAGTCCATCGAGCACAGTCACCGAAACTGACGG
TGACTGCTTGTGGAGGCAGTGGTGGATAACTCCGGGTGATGATAACTTCG
ATGCCTTCGAATACTTTACCTTTGACGAGGCGGATCATCCAGTTGACATC
ACCCCAGGAGGCCTATGGCATACGTGAGTCTTCCCGACCCATTGACACCG
TCACTCTCGTTTCTTGAATGCCGTTAGGGAGGGTACCAGCCGCGGGTTGG
AATCGTAAAGGTGTGTGTGTGTGTGTATGCATTAGGGTTTTCGGCTCTAT
CCGTCCGCCAACCAGAGCCACGCTCTAAGTTATTGTTCCGTCTACGAGGC
TCGTTTTGGCACGCACTGTGCGATAGACTACGCTTCGCTCCCAGTACACT
TCGACGGCTGCTGCGGTTTCATGACAGAGTAGCGCATGGGGCTCAGTATT
GTACGAAGAATATATGATAACTTAAAAAAACAAAATGCTCCGCCCGCATA
GCACTCAAGGAAGAGCTGGTACTCTATTACCGGCGATTCCGATGTTGGAG
CTTGAAAGCTTGAGCGGTTGCATTGATTGCGGTAGACATCAAGGGTAGCC
AAACCGAGGCCAACAAGGTTACGAGCGCCGGAAGCGCCCTTGCTTCTCTG
CCCTTTACCCTGACACCCTGACGGGACAGCCGTATTTCGGCCGCATTTTC
ATTCAATTGTCACGGAACATGCGTAACACAACGTCATGTTCCCTCACGCA
CAGATTGAAAACGATCGAGAAACCCTACGCCGGAGCCATCAATATCACAT
GTGCACCAGAGGTTACCCCAGCGTTGCCAACGCCGACACCAACTACCTCG
ATCTCCGTCGTGAATAGAACCGATAAAGGCACCAGCGAGGATACCAGTTA
TATACCTGCGATCATCGGGGGCGTGATGGGGGGAGTGGCGGTGCTGGGGT
TCCTTGGATTCGTGGCGTACAGGAGGATGAATATCCCATTCTCGCCCCCT
CTGCCGCCGCCTTCCTACAATGATCTTGTTCAGGGCTCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig17877:2098..4339+

>mRNA_H-elongata_contig17877.4722.1 ID=mRNA_H-elongata_contig17877.4722.1|Name=mRNA_H-elongata_contig17877.4722.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1806bp|location=Sequence derived from alignment at H-elongata_contig17877:2098..4339+ (Himanthalia elongata Himel1 dioecious)
GCGACCATAGCGTCATCCCAAAGCACGTCGGCAGTATGTGCCGAAAGCGC
AACCACGACTTGCGCGATAACCCAGTGGACCATCGCGTCCGACGTGGAGA
CGTTGCCGACATACTACACGTATGATGAGGCCGAGAATCCTGGTCAAATT
ACCGAGGTCTGGCTAAGGCGACCATAGCGTCATCCCAAAGCACGTCGGCA
GTATGTGCCGAAAGCGCAACCACGACTTGCGCGATAACCCAGTGGACCAT
CGCGTCCGACGTGGAGACGTTGCCGACATACTACACGTATGATGAGGCCG
AGAATCCTGGTCAAATTACCGAGGTCTGGCTAAGGGTGAACTGCAGCACA
GAGTGTGAGAGCTATCCCGCGGAAGTATTGGTGGTGTGTGGAGATGGCTC
GACCTCTGGCAGGTCGTCGCCCACCCCGTCGCCTGTCACGGCGACGTCGA
CAGACTGCGGGATAGTCAATGTGGCAGGAACTTCAGGGGGTGAGTTGGAC
GGAACCTACTACGACGACGGCAGTCCTCTGCAGGGTGAAGTGACCCAGTT
CAACGGGTATGACGCTAGTGATCTGACGAGGGTGAACTGCAGCACAGAGT
GTGAGAGCTATCCCGCGGAAGTATTGGTGGTGTGTGGAGATGGCTCGACC
TCTGGCAGGTCGTCGCCCACCCCGTCGCCTGTCACGGCGACGTCGACAGA
CTGCGGGATAGTCAATGTGGCAGGAACTTCAGGGGGTGAGTTGGACGGAA
CCTACTACGACGACGGCAGTCCTCTGCAGGGTGAAGTGACCCAGTTCAAC
GGGTATGACGCTAGTGATCTGACGAGCAACGGAAACACCCTTGTGATGAA
CTCGACCACCGGGGACTGTCCCAGTCCATCGAGCACAGTCACCGAAACTG
ACGGTGACTGCTTGTGGAGGCAGTGGTGGATAACTCCGGGTGATGATAAC
TTCGATGCCTTCGAATACTTTACCTTTGACGAGGCGGATCATCCAGTTGA
CATCACCCCAGGAGGCCTATGGCATACCAACGGAAACACCCTTGTGATGA
ACTCGACCACCGGGGACTGTCCCAGTCCATCGAGCACAGTCACCGAAACT
GACGGTGACTGCTTGTGGAGGCAGTGGTGGATAACTCCGGGTGATGATAA
CTTCGATGCCTTCGAATACTTTACCTTTGACGAGGCGGATCATCCAGTTG
ACATCACCCCAGGAGGCCTATGGCATACATTGAAAACGATCGAGAAACCC
TACGCCGGAGCCATCAATATCACATGTGCACCAGAGGTTACCCCAGCGTT
GCCAACGCCGACACCAACTACCTCGATCTCCGTCGTGAATAGAACCGATA
AAGGCACCAGCGAGGATACCAGTTATATACCTGCGATCATCGGGGGCGTG
ATGGGGGGAGTGGCGGTGCTGGGGTTCCTTGGATTCGTGGCGTACAGGAG
GATGAATATCCCATTCTCGCCCCCTCTGCCGCCGCCTTCCTACAATGATC
TTGTTCAGGGCTCGTGAATTGAAAACGATCGAGAAACCCTACGCCGGAGC
CATCAATATCACATGTGCACCAGAGGTTACCCCAGCGTTGCCAACGCCGA
CACCAACTACCTCGATCTCCGTCGTGAATAGAACCGATAAAGGCACCAGC
GAGGATACCAGTTATATACCTGCGATCATCGGGGGCGTGATGGGGGGAGT
GGCGGTGCTGGGGTTCCTTGGATTCGTGGCGTACAGGAGGATGAATATCC
CATTCTCGCCCCCTCTGCCGCCGCCTTCCTACAATGATCTTGTTCAGGGC
TCGTGA
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