mRNA_H-elongata_contig17871.4720.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17871.4720.1
Unique NamemRNA_H-elongata_contig17871.4720.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17871.4720.1 vs. uniprot
Match: D7FIH5_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH5_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 5.740e-38
Identity = 92/181 (50.83%), Postives = 108/181 (59.67%), Query Frame = 3 
Query:    3 RLQGGGGQSSSIVYGASAGADNSVFLAGAAATTYGWDG-HLPSGLYDFAMVKLDADGDFLWAWLEGSEGSDFFNDAAAIADGGVVATGMSNGTWNGTASIGDADFAAIKLDSDGDLIWRWQDGTSEPDEMEACVATADGNVVLAGYTQGTWEGVYDDGWNDAVAVKLNVDNGEIIWTYRVG 542
            R Q G       VYG S  A+ S FLAG   TT   DG  L +G  D A+ KLD+DG  LW+W EG+ G D  +DAAA  DGGVV  G SNGT +G  S G  DF AIK DSDG   WRWQ+GT + + +  C  TADGNVVL G TQG WE      W   VAVKL+V +G +IW Y+ G
Sbjct:   10 RFQAGSSYDDDAVYGVSTDAEGSFFLAGK--TTGSLDGITLNAGGEDMAVGKLDSDGVLLWSWQEGTTGEDTMSDAAATDDGGVVVGGYSNGTLSGVVSEGLGDFIAIKFDSDGTEEWRWQEGTEKDEVISTCSKTADGNVVLTGLTQGDWEETNTGLWA-LVAVKLDVSDGSVIWRYQAG 187
[Close]
BLAST of mRNA_H-elongata_contig17871.4720.1 vs. uniprot
Match: A0A6H5L7T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T2_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 7.080e-33
Identity = 90/170 (52.94%), Postives = 100/170 (58.82%), Query Frame = 3 
Query:   39 VYGASAGADNSVFLAGAAATTYG-WDG-HLPSGLYDFAMVKLDADGDFLWAWLEGSEGSDFFNDAAAIADGGVVATGMSNGTWNGTASIGDADFAAIKLDSDGDLIWRWQDGTSEPDEMEACVATADGNVVLAGYTQGTWEGVYDDGWNDAVAVKLNVDNGEIIWTYRVG 542
            VYG SA A+ S FLAG   TT G  DG    +G  D A  KLD+DG  LW W EGS   D   DAAA  DGGVV  G  NGT NG  S G  DF AIK DSDG   WRWQDGT + + +  C  TADGNVVL G TQG W       W   VAVKL+V +G +IW Y+ G
Sbjct:   25 VYGVSADAEGSFFLAG---TTEGSLDGITFNAGGTDMAAGKLDSDGAVLWYWQEGSTEDDTLADAAATDDGGVVFAGFYNGTLNGVPSEGLGDFFAIKFDSDGTEEWRWQDGTEKDEVILTCSKTADGNVVLTGMTQGDWVETNTGLWA-LVAVKLDVTDGSVIWQYQAG 190
[Close]
BLAST of mRNA_H-elongata_contig17871.4720.1 vs. uniprot
Match: D7FIH4_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH4_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 5.820e-30
Identity = 77/168 (45.83%), Postives = 103/168 (61.31%), Query Frame = 1 
Query:  556 GSAARADGSVVLCGTTFGSFAVDSFSGE-EGSSDFLAIAIDEDGIELWRWQDGSGDGYNYCRAIAAFDDGSVVLAGLTTGSWNGSNLGGYDFAAVKLSAAGVEEWRIQDGTESDDSWTSAAVDNDGLFIV-SGYTYGSWASVQTDTDLVTDFVTAGFNDAGYLQWSLQ 1053
            GSA+RADGS+V+ G T G      + GE  G +DF  +A+DEDG ELWR+QDGS    +    +AA  DGSVVLAG T G++ G+N G  DFA VKL+  GV +W  QDGT  D+S+   A   DG  +V +GYT+G+WA+ Q + +   D V    +  G L W+ Q
Sbjct:  143 GSASRADGSIVIGGVTDG-----DWDGELTGFTDFFTVALDEDGSELWRFQDGSLLSSSSAWGVAALSDGSVVLAGTTDGNYAGTNAGAQDFAVVKLTEEGVLDWTWQDGTPYDESFEGVATGIDGTSMVFAGYTFGTWAAAQAEDEDDMDAVGMSMDGDGTLLWTYQ 305
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BLAST of mRNA_H-elongata_contig17871.4720.1 vs. uniprot
Match: D8LHV1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.780e-23
Identity = 64/139 (46.04%), Postives = 84/139 (60.43%), Query Frame = 3 
Query:  129 GLYDFAMVKLDADGDFLWAWLEGSEGSDF-FNDAAAIADGGVVATGMSNGTWNGTASIGDADFAAIKLDSDGDLIWRWQDGTSEPDEMEACVATADGNVVLAGYTQGTWEGVYDDGWNDAVAVKLNVDNGEIIWTYRVG 542
            G YDF   K+D DG+ LW W +G+ G D  +   +A  +G V+  GM++  ++G  S+G  DF AIKLDS G  +W WQDGTS  DE++A  AT DG VVLAGYT G W G       D  AVKL+  NG  +W ++ G
Sbjct:  130 GGYDFIAYKVDGDGNLLWKWQDGTIGFDILWAVVSADEEGSVIMAGMTSLDFSGP-SVGSLDFVAIKLDSGGTTLWTWQDGTSSSDEIQAAAATGDGFVVLAGYTFGEWSGGLTGEECDFAAVKLDA-NGTEVWRWQGG 266
[Close]
BLAST of mRNA_H-elongata_contig17871.4720.1 vs. uniprot
Match: A0A6H5JZC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC7_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 4.270e-21
Identity = 58/143 (40.56%), Postives = 84/143 (58.74%), Query Frame = 3 
Query:  129 GLYDFAMVKLDADGDFLWAWLEGSEGSDFFNDAAAIADGGVVATGMSNGTWNGTASIGDADFAAIKLDSDGDLIWRWQDGTSEPDEMEACVATADG----NVVLAGYTQGTWEGVYDDGWNDAVAVKLNVDNGEIIWTYRVGS 545
            G +DF  VK+  DG +LW W +G+   D  NDA   +DG VV  G + G W GT + G  DFAA+KLD  G ++W+WQ GTS+ DE+   + +A+      VVL G T+G+W      G+ D  A KL+ D  E+ W+++ G+
Sbjct:   46 GGFDFLAVKIGPDGLYLWHWQDGTSDEDNLNDAVVNSDGSVVLAGSTEGDWGGT-NAGLGDFAAVKLDESGAVLWKWQSGTSD-DELLVGITSANSASGSEVVLVGRTEGSWAASNAGGY-DFCAAKLDADGNEL-WSWQDGT 184
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BLAST of mRNA_H-elongata_contig17871.4720.1 vs. uniprot
Match: A0A6H5LJ25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ25_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 7.070e-21
Identity = 61/138 (44.20%), Postives = 82/138 (59.42%), Query Frame = 3 
Query:  138 DFAMVKLDADGDFLWAWLEGSEGSDFFNDAAAIADGGVVATGMSNGTWNGTASIGDADFAAIKLDSDGDLIWRWQDGTSEPDEMEACVATADGNVVLAGYTQGTWEGVYDDGW--NDAVAVKLNVDNGEIIWTYRVGS 545
            DFA  KLD+ G+  W W   ++G D  +  A  A+G  V  G + G +NGT S G  DF A+KLD  G  +WRWQDGT+E D +EA V + DG+ VLAG+T G+W     DG    D  AV L+ D G+ IW ++ G+
Sbjct:  174 DFAACKLDSSGNVTWRWQATTDGLDAVSSIAP-ANGSFVLGGRTTGDFNGT-SAGGTDFVAVKLDDSGTEVWRWQDGTAEDDFVEAVVHSDDGSAVLAGHTYGSWSSDNADGSFSKDFAAVMLSSD-GKEIWRWQDGT 308
[Close]
BLAST of mRNA_H-elongata_contig17871.4720.1 vs. uniprot
Match: D7G7A3_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A3_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.000e-20
Identity = 56/139 (40.29%), Postives = 79/139 (56.83%), Query Frame = 3 
Query:  129 GLYDFAMVKLDADGDFLWAWLEGSEGSDFFNDAAAIADGGVVATGMSNGTWNGTASIGDADFAAIKLDSDGDLIWRWQDGTSEPDEMEACVATADGNVVLAGYTQGTWEGVYDDGWNDAVAVKLNVDNGEIIWTYRVGS 545
            G YDF   KLDADG+ LW+W +G++  D     A   DG V   G + G WN   + G+ DFA  KLD++G L WRWQDGT + +     V   DG V LAGY+ G + G+ + G    V VK++  +G  +W ++ G+
Sbjct:  339 GGYDFCAAKLDADGNELWSWQDGTDADDTTKAVAVDGDGSVFLAGYTEGDWN-QPNEGETDFAVTKLDANGTLAWRWQDGTEDEEFGLMVVVGRDGGVYLAGYSTGAFGGI-NKGSEGFVVVKIDGRDGSELWRWQNGT 475
[Close]
BLAST of mRNA_H-elongata_contig17871.4720.1 vs. uniprot
Match: D7FXY5_ECTSI (von Willebrand factor type D domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY5_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 2.640e-20
Identity = 64/166 (38.55%), Postives = 87/166 (52.41%), Query Frame = 1 
Query:  562 AARADGSVVLCGTTFGSFAVDSFSGEEGSSDFLAIAIDEDGIELWRWQDGSGDGYNYCRAIAAFDDGSVVLAGLTTGSWNGS--NLGGYDFAAVKLSAAGVEEWRIQDGTESDDSWTSAAVDNDGLFIVSGYTYGSWASVQTDTDLVTDFVTAGFNDAGYLQWSLQ 1053
            AA  D +VVL G T GS   D+     G +D   + +D DG  LWRWQ G+ +  + C A A  +DGS+V+AG T GSW GS  N G  D   VKL   G E W  Q+GT   D   +AA+  DG F+++GY+ G WA+        +D +    +  G + W  Q
Sbjct:  219 AAAEDDTVVLAGYTEGSLGGDN----AGETDCAVVKLDADGGVLWRWQGGTAES-DVCSAAAVAEDGSIVVAGYTVGSWGGSEANAGEDDLVVVKLDKDGNELWHWQEGTPLKDRLFAAALCEDGGFVLAGYSEGDWAAADAGAG-GSDLIAVKLSPEGEVLWRWQ 378
[Close]
BLAST of mRNA_H-elongata_contig17871.4720.1 vs. uniprot
Match: A0A6H5KY76_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY76_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.310e-19
Identity = 74/201 (36.82%), Postives = 103/201 (51.24%), Query Frame = 3 
Query:   36 IVYGASAGADNSVFLAGAAATTYGWDGHLPSGLYDFAMVKLDADGDFLWAWLEGS------EGSDFF--------------------NDA----AAIADGGVVATGMSNGTWNGTASIGDADFAAIKLDSDGDLIWRWQDGTSEPDEMEAC-VATADGNVVLAGYTQGTWEGVYDDGWNDAVAVKLNVDNGEIIWTYRVGS 545
            +  G + G + S  LAGA  T   WDG    G  D A +KLDA+G+ LW + +GS      +  DF+                    +D     A   DG V+  G + G+W+G A+ GD+DFAA +LD +G+ IWR+QDGT E D M A  +   D +VV+AG T   + G  + G  D V VKLN  +G  IW Y+ G+
Sbjct:   17 VFAGGAMGPNGSCVLAGA--TEGAWDGTNFGG-NDMAAIKLDAEGNELWRYQDGSVVLAGHQNLDFYVTXXXXXXXXXXXXXXXTPEDDIPYWMAMAGDGSVICVGQTYGSWDGDAN-GDSDFAAFRLDGNGEEIWRYQDGTEEEDLMTAAAMGDGDSSVVMAGQTYVNFSGASNSGSADIVVVKLNATSGTEIWRYQDGT 213
[Close]
BLAST of mRNA_H-elongata_contig17871.4720.1 vs. uniprot
Match: A0A6H5JF09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF09_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.840e-19
Identity = 63/166 (37.95%), Postives = 85/166 (51.20%), Query Frame = 1 
Query:  562 AARADGSVVLCGTTFGSFAVDSFSGEEGSSDFLAIAIDEDGIELWRWQDGSGDGYNYCRAIAAFDDGSVVLAGLTTGSWNGS--NLGGYDFAAVKLSAAGVEEWRIQDGTESDDSWTSAAVDNDGLFIVSGYTYGSWASVQTDTDLVTDFVTAGFNDAGYLQWSLQ 1053
            AA  D +VVL G T GS          G +D   + +D DG  LWRWQ G+ +  + C A    +DGS+VLAG T GSW+GS  N G  D   VKL   G E W  Q+GT   D   +AA+  DG F+++GY+ G WA+        +D +    +  G + W  Q
Sbjct:  166 AAAEDDTVVLAGYTDGSLG----GVNAGETDCTVVKLDADGGVLWRWQGGTAES-DVCSATVVAEDGSIVLAGYTVGSWDGSEANAGEEDLVVVKLDKDGNELWHWQEGTSLKDRLFAAALCEDGGFVLAGYSEGDWAAADAGAG-GSDLIAVKLSPEGEVLWRWQ 325
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17871.4720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIH5_ECTSI5.740e-3850.83Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
A0A6H5L7T2_9PHAE7.080e-3352.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIH4_ECTSI5.820e-3045.83Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
D8LHV1_ECTSI1.780e-2346.04Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JZC7_9PHAE4.270e-2140.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LJ25_9PHAE7.070e-2144.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7A3_ECTSI1.000e-2040.29Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
D7FXY5_ECTSI2.640e-2038.55von Willebrand factor type D domain protein n=1 Ta... [more]
A0A6H5KY76_9PHAE1.310e-1936.82Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JF09_9PHAE1.840e-1937.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17871contigH-elongata_contig17871:1068..6071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue6e-21
Seed eggNOG ortholog2880.D8LRF5
Preferred nameRIPK4
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons7
Model size2339
Cds size477
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930031.5862448-UTR-H-elongata_contig17871:1067..12131622930031.5862448-UTR-H-elongata_contig17871:1067..1213Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17871 1068..1213 +
1691679253.9702394-UTR-H-elongata_contig17871:1067..12131691679253.9702394-UTR-H-elongata_contig17871:1067..1213Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17871 1068..1213 +
1622930031.6477082-UTR-H-elongata_contig17871:2895..29771622930031.6477082-UTR-H-elongata_contig17871:2895..2977Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17871 2896..2977 +
1691679254.0290408-UTR-H-elongata_contig17871:2895..29771691679254.0290408-UTR-H-elongata_contig17871:2895..2977Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17871 2896..2977 +
1622930031.6618342-UTR-H-elongata_contig17871:3255..34261622930031.6618342-UTR-H-elongata_contig17871:3255..3426Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17871 3256..3426 +
1691679254.0389593-UTR-H-elongata_contig17871:3255..34261691679254.0389593-UTR-H-elongata_contig17871:3255..3426Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17871 3256..3426 +
1622930031.6820939-UTR-H-elongata_contig17871:3936..41131622930031.6820939-UTR-H-elongata_contig17871:3936..4113Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17871 3937..4113 +
1691679254.04866-UTR-H-elongata_contig17871:3936..41131691679254.04866-UTR-H-elongata_contig17871:3936..4113Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17871 3937..4113 +
1622930031.7015846-UTR-H-elongata_contig17871:4785..60711622930031.7015846-UTR-H-elongata_contig17871:4785..6071Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17871 4786..6071 +
1691679254.0647693-UTR-H-elongata_contig17871:4785..60711691679254.0647693-UTR-H-elongata_contig17871:4785..6071Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17871 4786..6071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930031.597435-CDS-H-elongata_contig17871:1213..12581622930031.597435-CDS-H-elongata_contig17871:1213..1258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17871 1214..1258 +
1691679253.9812944-CDS-H-elongata_contig17871:1213..12581691679253.9812944-CDS-H-elongata_contig17871:1213..1258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17871 1214..1258 +
1622930031.6103363-CDS-H-elongata_contig17871:1494..16651622930031.6103363-CDS-H-elongata_contig17871:1494..1665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17871 1495..1665 +
1691679253.9914448-CDS-H-elongata_contig17871:1494..16651691679253.9914448-CDS-H-elongata_contig17871:1494..1665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17871 1495..1665 +
1622930031.6228313-CDS-H-elongata_contig17871:2301..24831622930031.6228313-CDS-H-elongata_contig17871:2301..2483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17871 2302..2483 +
1691679254.0102906-CDS-H-elongata_contig17871:2301..24831691679254.0102906-CDS-H-elongata_contig17871:2301..2483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17871 2302..2483 +
1622930031.6348424-CDS-H-elongata_contig17871:2816..28951622930031.6348424-CDS-H-elongata_contig17871:2816..2895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17871 2817..2895 +
1691679254.019437-CDS-H-elongata_contig17871:2816..28951691679254.019437-CDS-H-elongata_contig17871:2816..2895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17871 2817..2895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17871.4720.1prot_H-elongata_contig17871.4720.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17871 1214..2895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17871.4720.1

>prot_H-elongata_contig17871.4720.1 ID=prot_H-elongata_contig17871.4720.1|Name=mRNA_H-elongata_contig17871.4720.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
MVKLDADGDFLWAWLEGSEGSDFFNDAAAIADGGVVATGMSNGTWNGTAS
IGDADFAAIKLDSDGDLIWRWQDGTSEPDEMEACVATADGNVVLAGYTQG
TWEGVYDDGWNDAVAVKLNVDNGEIIWTYRVGSLRVRVCRQSGWLGCVVW
HNLRIVRR*
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mRNA from alignment at H-elongata_contig17871:1068..6071+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17871.4720.1 ID=mRNA_H-elongata_contig17871.4720.1|Name=mRNA_H-elongata_contig17871.4720.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5004bp|location=Sequence derived from alignment at H-elongata_contig17871:1068..6071+ (Himanthalia elongata Himel1 dioecious)
GGCGCTTGCAGGGTGGAGGTGGCCAATCTAGCTCGATCGTTTATGGAGCA
TCGGCGGGCGCCGACAACTCTGTGTTTCTTGCCGGTGCGGCTGCCACAAC
ATACGGATGGGATGGTCATTTACCGTCGGGGCTTTACGATTTCGCCATGG
TCAAACTTGACGCGGATGGAGATTTCCTGTGGGCATGGCTGGTAAGTGCT
GTAATAGTTCACAAAACAAAATACCTTTTTTGTGGCGTGGGCGAGGAATC
GATGACATGGCCATCTTTCATTTTCTCGACGGGTACGTAAAGGATGTCAT
GGCTCAATACGATGATGTAAACAATTAAAAAAGGAGCGAGTCATCTTCCC
TCGGTAAACCTCCCGAGATGCACAATGCACACAAATGACGCAAAAAAATA
GCTCGCATTACGTGCTTCACGGTGCAGGAAGGGTCTGAAGGGTCGGATTT
TTTTAATGATGCCGCGGCCATAGCAGACGGAGGGGTTGTTGCGACCGGCA
TGTCCAACGGGACGTGGAACGGAACGGCATCGATTGGGGATGCCGACTTC
GCCGCTATCAAGCTTGACTCAGACGGTGATCTTATCTGGCGGTGGCAGGT
GATTATAAGCGCTTGTGTTGGTGTCCAAAAGTGAAGTAAAACGACTAAGA
AGACCCTGCAGAGAAAGCGCCTATGACATTGGATTACCAAGCCATAATAT
TTCATTTTGCAGTACAATAAAGGACAGTATCGCGCAATATAGCTCTACAG
AAGCATAGTAAAGTACACTAAAATATACGACGTAGTACATAACATTGACA
TTAACATAGTATAACACATCAGATTACCTTATTATACTATGTGCAATTAT
AGGCGATGGGGTCGGCGTCGACCGGCGTTCGGGATTACGCCCGCCAACAA
TTATGTAAATTCCTCGTATAGCCCTACATACTGTCCATAGTCGACATTGC
AACACTCAAGCCAATCATGGTTTCCTTGTTCCTGGTCGCTAAGAAAGCTA
TCGGCGAGTTCAGCGAGCTTCAATTGCTTCTTTTACTACTGCGTCATCCA
TCCCTTGAGTACACCCACTTTCAAGATAATGTTCTTGCCAGAAAACAACC
AGAAAGCACTCAAGCAGGAACAACTGCGGCAACCCACCATGACATACCAC
ACCTTATAGGCATACCGGTATATAATTATTTTCTCATAAAAACATATGCA
CCAATTCAAACCCTCCGTACATCCACGCCTTCAGGACGGGACTAGCGAGC
CCGACGAAATGGAAGCATGTGTAGCAACTGCAGATGGAAATGTGGTTTTG
GCAGGCTATACGCAAGGAACGTGGGAGGGTGTTTACGACGACGGCTGGAA
TGACGCCGTGGCAGTGAAGCTCAACGTAGACAATGGAGAAATAATTTGGA
CTTATCGGGTGGGTAGGTGCTGCGCCGTTTTTAGTGTAACTCTAAAATGA
ACTATTCGCGAACGGTACCCATCGCTCACATGGTATATACCATACCCCGT
GCAGTGCCTCCGTCGCCGCATTCGTTTCTTCTCAGAGTTTCAGACCCTTT
AAGTGGCGTTGCTCTAGCTAAAAGAGGCCTGAAAGTGCCTCAGAATGCGC
TGGAAGAAATCAGGGCCATCGTTAAATCCCATGTCGCTCTCTAGGTCGCC
AACCGCGGGTGTGTGCACGTACCACTCTCCTTTCATAATGCTAACTGATT
CGTCATATCAACGGTGATTTTCAGGCAGGGACATCCAACGATGGTGGAGC
CTACGTGTACGGGTCTGCCGCCAGAGCGGATGGCTCGGTTGTGTTGTGTG
GCACAACCTTCGGATCGTTCGCCGTTGACTCTTTCTCTGGAGAGGAGGGA
TCCAGCGACTTTCTCGCCATCGCAATCGACGAAGACGGAATTGAACTGTG
GCGATGGCAGGTGGTAAAAACCCCGCCCATGTCGGGTGCTTCGTCGCACC
TTGGGACGGGACCCATGTAACCTCCTTCATATTCACTGCAAATCGCGCCT
GATAAAGTTCAAGGGTTCGAGTTGCCTATCTCTAAGAATGGAGGGGGGTC
GTTAGATCAGATATTGCCACAGCTGATGAGATTTGACGCTGTGCTCGTAC
CTTCCGCTCCAATAAAGTTTATATTATACACGTGCTAAGTCAAATATCAA
GCTATGGACATTTGCCTGACGCCCGTCGTCTTCCGCAGGACGGATCCGGC
GATGGTTACAATTATTGTCGGGCTATTGCTGCTTTCGACGATGGTTCTGT
AGTACTTGCGGGCCTTACAACAGGAAGCTGGAATGGGTCGAACCTGGGAG
GATATGACTTTGCAGCGGTGAAATTAAGTGCTGCTGGAGTGGAGGAGTGG
CGTATACAGGTAATGTATATAATATATATATATATATATATCGGTGACTG
GGTAACGTCGACGACCTCATTCCCTTTTTTGTACGTTGTACGTTGTACGT
TGATTATGCTGTCATTTTTCGAGTCGGTGGTCATTGCTAACGCTTACTCA
AGCTCATGCCAATCGGGCTTTACAACCCGAAGATCTTGACCGGCAAAGCA
TGCGGTATTGACTGAGCATTAAAGATGTAGGGCAAGGCGACGCGTCACTT
TTGGTAATTTGTCGTCTTGATGTCAAAAGCGTTTCCTCCTGTGGAAACCG
GCACTTAGAACCATGGATGACACGTATATCTTCGCTGTAATCCGGGTGAT
ATCATCGCTCCCGACACGATCTTCGTAGCCTTCGAAAGCATATTTGATTT
AACGTAAGGTTGTCTCCATCTCATGAGGGTACTTTGTCGTTTATTAATTA
TATCAGTATCTTGAGATCGGCAAGAGGTCGTGAGAGCAGGTGTGCCGATG
TCCGTGTTTCCATTGACAGGATGGTACAGAGTCCGATGATAGCTGGACGT
CGGCGGCTGTCGATAATGATGGCTTGTTTATAGTGTCGGGGTACACGTAT
GGGAGCTGGGCTAGCGTACAAACGGATACTGATCTGGTGACCGATTTCGT
CACAGCGGGGTTTAACGACGCAGGATATCTTCAGTGGTCGCTTCAGGTGG
GGAACAAGGGCGACATATTTAGCATATGATGAACGGTTGACCTACCTCGT
TCAAAAACGATTACTTGTGCATTTATTTGCCCTAATATTGTATAAGGCTA
TATATAGCTATGAAACGCGCTCGGGAGTCTGACGTCCCAACCCCCAAGAG
ATTAGAAATTATTCCCTCACGTAAACCATGATGTAACCTTTATTTAGTGA
TCATTTGGAAGTCTACATTCGCGAACAGAAACTTTGCCAGTCACTCATTA
GCCTCGTCATATCTTGTTATCCAGGATGGAACTGTGGAAAACGATTACTT
TAATGGCGTCACCATCCGGCCGGATGGCCTGATACTGCTGGCGGGATTTA
CCAGTGGGACCTTCGACGATATCGACGATTCTGACTCTTACTACGACTTT
GTAGCACTCTTGCTCGACACGAACACGACGGACATGACGAGTTCTACAAG
CGTGGTGACTATTTCACCCTCCACAACAACAACCATCGACGCCGCTACAA
TTCCCCCGGCTTTGATCATAGTTACAGCCACATTCTCCCCAACTACAACC
ATCGATGCCCCTACACTCTCCCCGGCTTCGACAAATATTGTTGTACCCAC
ACCTTCCCCGACTACGGCCGAACTCACACCTTCTCCCTCCTTATCGCCGA
TGTTTAATTCGATCGAAGATATGACCCCGAGCCCGGATTCGGCCTACTAT
GTGACACCTTCTGACTCTGAAGATTCGGGAACACCGGTGGAAGTCATTGT
TGGAGCCTCGGGCGGCGTGGTGTTTCTGGCGATTGTCGGCGTGTGCCTAT
ATTGCTGCTGGCAGCGGTCCGTTGCGACCACCACTGCCCCTGCTCTACAT
GACTCAGGGAATCAAGTGCCAAGAACTACGCAAGCAGTCATCGGCACGAA
TGCTGTGCCCGCCCCAACATACTCTGAACCCCCGACGTACGAAGAACCTC
CGACCTATTCTGCAATTGTAACAAGTGTCAAAAATAAATAAACCTTAGAT
GTTTGTAGCTTCTAGGAAAATCCTGAAGTTTGGTGGTGAGAGTCGTTACT
TGCCGCAATAAGAGGGTGCTACGGATCAGTTGCAGGTAATAGCTAGGCTT
CGACTACTAGGAGTGCCGAGGGTCAAAATTATTTCGAATACGGTACGTTT
GTAATGCGGTGCTATAACGAAGCACCTCTGTTTGTACGAATGGCTGCAGA
CCTTTGCTGACTTTGGGAATACGCGCGTACGTTTCCGTGTATATTGTTTT
GTGCTTGGGAACGAATCCGAAGGGAGAGTTATTGTCGCGAGGCAAATCTA
CCGACTGAAGCCCCTCGATCTCTAAGCAGTCGGGATCTGGGAGAGGACGG
TGTGCGTCGACTCTCGCGCGGGGTAATTTTATGGCAAATGAATAATCCTC
ACTAGGGTTATGTGCTGAGGGAACGGTCATGTTCTGAGTTTGCCTGCTCT
TTTTGCCGTTAGTGTCTGGTAAGGATTGTCGCTGTCCGCCGTAGGCATCT
TTCCTTTTGTAGCTGGTCGCCCTTGCGTTTGTATTTGGCGCGTCTCTCTG
TTGTCAGCCCGTTATGTAGGGATCGTGGACTGGTATTTTTCATACGCTGT
GGCATTGCGTGGTGCGTATGCACCCATCGCTACTTCGTGGTTCTCTTGGT
ATCCCTTACTCGTCTTGGCTATATATTTCTCATCTAACTGCAAATATACC
GGTATAGAGCAACACGATGTGAGCGCGCAGTCCACGGCGTATGTACAAGT
AGTGCTACTGTGTATGCCTACATACAAACAACAGCACATATTATATACGG
GCTCGTGATCAAGACGTCCAAAGTGATGTCCGCTTCCCCGCGCGTAGCCG
GCGTACAGCAGTGACGTACTTTCCTCGGGATAAATTGCGGCTACCAATCG
TCTAAAAGGTTCAGCTCTCGAACTGGCGACATACAATATCTCACTACGTA
AACC
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Coding sequence (CDS) from alignment at H-elongata_contig17871:1068..6071+

>mRNA_H-elongata_contig17871.4720.1 ID=mRNA_H-elongata_contig17871.4720.1|Name=mRNA_H-elongata_contig17871.4720.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig17871:1068..6071+ (Himanthalia elongata Himel1 dioecious)
ATGGTCAAACTTGACGCGGATGGAGATTTCCTGTGGGCATGGCTGATGGT
CAAACTTGACGCGGATGGAGATTTCCTGTGGGCATGGCTGGAAGGGTCTG
AAGGGTCGGATTTTTTTAATGATGCCGCGGCCATAGCAGACGGAGGGGTT
GTTGCGACCGGCATGTCCAACGGGACGTGGAACGGAACGGCATCGATTGG
GGATGCCGACTTCGCCGCTATCAAGCTTGACTCAGACGGTGATCTTATCT
GGCGGTGGCAGGAAGGGTCTGAAGGGTCGGATTTTTTTAATGATGCCGCG
GCCATAGCAGACGGAGGGGTTGTTGCGACCGGCATGTCCAACGGGACGTG
GAACGGAACGGCATCGATTGGGGATGCCGACTTCGCCGCTATCAAGCTTG
ACTCAGACGGTGATCTTATCTGGCGGTGGCAGGACGGGACTAGCGAGCCC
GACGAAATGGAAGCATGTGTAGCAACTGCAGATGGAAATGTGGTTTTGGC
AGGCTATACGCAAGGAACGTGGGAGGGTGTTTACGACGACGGCTGGAATG
ACGCCGTGGCAGTGAAGCTCAACGTAGACAATGGAGAAATAATTTGGACT
TATCGGGTGGGTAGGACGGGACTAGCGAGCCCGACGAAATGGAAGCATGT
GTAGCAACTGCAGATGGAAATGTGGTTTTGGCAGGCTATACGCAAGGAAC
GTGGGAGGGTGTTTACGACGACGGCTGGAATGACGCCGTGGCAGTGAAGC
TCAACGTAGACAATGGAGAAATAATTTGGACTTATCGGGTGGGTAGCCTA
CGTGTACGGGTCTGCCGCCAGAGCGGATGGCTCGGTTGTGTTGTGTGGCA
CAACCTTCGGATCGTTCGCCGTTGACCTACGTGTACGGGTCTGCCGCCAG
AGCGGATGGCTCGGTTGTGTTGTGTGGCACAACCTTCGGATCGTTCGCCG
TTGA
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