mRNA_H-elongata_contig17869.4718.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17869.4718.1
Unique NamemRNA_H-elongata_contig17869.4718.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 95.1 bits (235), Expect = 2.870e-20
Identity = 51/123 (41.46%), Postives = 74/123 (60.16%), Query Frame = 1
Query:    1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRWNRLL 366
            K  N V   WV   KT++ G V+K  +R+VA+  SQ  G D+LE FAP      ++ ++ +AV N+WE+   DV  A++   L  ++YM+  +G  D SGRI  L+  +YGL+QSGR WNR L
Sbjct:  946 KDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKL 1068          
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY)

HSP 1 Score: 91.3 bits (225), Expect = 3.550e-20
Identity = 48/123 (39.02%), Postives = 72/123 (58.54%), Query Frame = 1
Query:    1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRWNRLL 366
            K  N V   WV   KT++ G V+K  +R+VA+  SQ  G D+LE FAP      ++ ++ +AV N+WE+   DV  A++   L  ++YM+  +G  D SG +  L   +YGL+QSG +WNR L
Sbjct:   11 KDRNAVGCKWVFQKKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVHLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGHVCRLHKTLYGLKQSGHKWNRKL 133          
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A5E4GDR6_PRUDU (PREDICTED: Retrovirus-related Pol poly from transposon (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GDR6_PRUDU)

HSP 1 Score: 93.6 bits (231), Expect = 5.540e-20
Identity = 52/124 (41.94%), Postives = 72/124 (58.06%), Query Frame = 1
Query:    7 TNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGDS---GRIVLLQSAVYGLRQSGRRWNRLLT 369
            TNIV   W+   K +  G + +  +R+VA+  SQEYG DY E F+P    + V+L++G+AV   WELR  DV  AF+   L  DV+MK  QG  DS     +  LQ ++YGL+Q+ R WN   T
Sbjct:  143 TNIVGCKWIFKIKKNADGTISRYKARLVAQGFSQEYGLDYEETFSPVVRHTTVRLILGLAVNFQWELRQLDVKNAFLHGELQEDVFMKQPQGFVDSQYPNHVCKLQKSLYGLKQAPRAWNAKFT 266          
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.100e-19
Identity = 44/116 (37.93%), Postives = 72/116 (62.07%), Query Frame = 1
Query:    4 GTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGR 348
            G   +   WV SWKT+E G ++   +RMVAR  S+  G D+    + +   + +K V+ VA E   +L ++DV +A+I   L  ++Y++F +GCG  SG++V ++ A+YGL+QSGR
Sbjct:   41 GRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKNEIYLRFPEGCGSMSGKVVKVERALYGLKQSGR 156          
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.750e-19
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRW 354
            +G   +   WV SWKT+E G ++   +RMVAR  SQ  G D+    +     + +K V+ VA E   +L ++DV +A+I   L  ++Y++F +GCG  SG++V ++ A+YGL+QSGR W
Sbjct:  253 EGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 371          
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.760e-19
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRW 354
            +G   +   WV SWKT+E G ++   +RMVAR  SQ  G D+    +     + +K V+ VA E   +L ++DV +A+I   L  ++Y++F +GCG  SG++V ++ A+YGL+QSGR W
Sbjct:  498 EGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 616          
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.810e-19
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRW 354
            +G   +   WV SWKT+E G ++   +RMVAR  SQ  G D+    +     + +K V+ VA E   +L ++DV +A+I   L  ++Y++F +GCG  SG++V ++ A+YGL+QSGR W
Sbjct:  399 EGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 517          
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5JI89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI89_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.810e-19
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRW 354
            +G   +   WV SWKT+E G ++   +RMVAR  SQ  G D+    +     + +K V+ VA E   +L ++DV +A+I   L  ++Y++F +GCG  SG++V ++ A+YGL+QSGR W
Sbjct:  567 EGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 685          
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5K1G1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G1_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.230e-19
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRW 354
            +G   +   WV SWKT+E G ++   +RMVAR+ SQ  G D+    +     + +K V+ VA E   +L ++DV +A+I   L  + Y++F +GCG  SG++V ++ A+YGL+QSGR W
Sbjct:   56 EGRKAIGLKWVFSWKTNEKGLIVDNKARMVARVFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAMLKEETYLRFPEGCGSISGKVVKVERALYGLKQSGREW 174          
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.910e-19
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRW 354
            +G   +   WV SWKT+E G +L   +R+VAR  SQ  G D+    +     + +K V+ VA E   +L ++DV +A+I   L  ++Y++F +GCG  SG++V ++ A+YGL+QSGR W
Sbjct:   56 EGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 174          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GYH9_9APHY2.870e-2041.46Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A401GXA0_9APHY3.550e-2039.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E4GDR6_PRUDU5.540e-2041.94PREDICTED: Retrovirus-related Pol poly from transp... [more]
A0A6H5LAZ3_9PHAE1.100e-1937.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE1.750e-1938.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE1.760e-1938.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE1.810e-1938.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI89_9PHAE1.810e-1938.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1G1_9PHAE2.230e-1938.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE2.910e-1938.66Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17869contigH-elongata_contig17869:368..739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score92.8
Seed ortholog evalue1.2e-16
Seed eggNOG ortholog5270.UM01583P0
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3NUZ7@4751,COG2801@1,KOG0017@2759
COG Functional cat.E
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930031.4813726-CDS-H-elongata_contig17869:367..7391622930031.4813726-CDS-H-elongata_contig17869:367..739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17869 368..739 -
1691679253.946176-CDS-H-elongata_contig17869:367..7391691679253.946176-CDS-H-elongata_contig17869:367..739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17869 368..739 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17869.4718.1prot_H-elongata_contig17869.4718.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17869 368..739 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17869.4718.1

>prot_H-elongata_contig17869.4718.1 ID=prot_H-elongata_contig17869.4718.1|Name=mRNA_H-elongata_contig17869.4718.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTS
LTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGDSGR
IVLLQSAVYGLRQSGRRWNRLLTK
back to top

mRNA from alignment at H-elongata_contig17869:368..739-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17869.4718.1 ID=mRNA_H-elongata_contig17869.4718.1|Name=mRNA_H-elongata_contig17869.4718.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at H-elongata_contig17869:368..739- (Himanthalia elongata Himel1 dioecious)
AAGGGTACTAATATTGTGTCTGGTTGGTGGGTTCGTTCCTGGAAAACGGA TGAACATGGAAATGTTCTCAAACCCAGCTCGCGTATGGTCGCAAGATTAT GTAGTCAGGAATACGGCGCCGACTACTTGGAAATCTTTGCACCAACATCG TTGACGTCGGGGGTGAAACTTGTTGTTGGAGTAGCAGTAGAGAATGATTG GGAGTTGCGATATTTTGACGTGGCAAAGGCTTTCATTCAGGTGGGTCTTG GCTTTGACGTTTACATGAAGTTTCTTCAAGGCTGTGGTGATAGTGGTAGG ATAGTATTGCTTCAATCAGCTGTGTATGGACTCCGCCAGTCTGGCCGCAG ATGGAATCGTTTGCTTACAAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig17869:368..739-

>mRNA_H-elongata_contig17869.4718.1 ID=mRNA_H-elongata_contig17869.4718.1|Name=mRNA_H-elongata_contig17869.4718.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig17869:368..739- (Himanthalia elongata Himel1 dioecious)
AAGGGTACTAATATTGTGTCTGGTTGGTGGGTTCGTTCCTGGAAAACGGA
TGAACATGGAAATGTTCTCAAACCCAGCTCGCGTATGGTCGCAAGATTAT
GTAGTCAGGAATACGGCGCCGACTACTTGGAAATCTTTGCACCAACATCG
TTGACGTCGGGGGTGAAACTTGTTGTTGGAGTAGCAGTAGAGAATGATTG
GGAGTTGCGATATTTTGACGTGGCAAAGGCTTTCATTCAGGTGGGTCTTG
GCTTTGACGTTTACATGAAGTTTCTTCAAGGCTGTGGTGATAGTGGTAGG
ATAGTATTGCTTCAATCAGCTGTGTATGGACTCCGCCAGTCTGGCCGCAG
ATGGAATCGTTTGCTTACAAAGAAGGGTACTAATATTGTGTCTGGTTGGT
GGGTTCGTTCCTGGAAAACGGATGAACATGGAAATGTTCTCAAACCCAGC
TCGCGTATGGTCGCAAGATTATGTAGTCAGGAATACGGCGCCGACTACTT
GGAAATCTTTGCACCAACATCGTTGACGTCGGGGGTGAAACTTGTTGTTG
GAGTAGCAGTAGAGAATGATTGGGAGTTGCGATATTTTGACGTGGCAAAG
GCTTTCATTCAGGTGGGTCTTGGCTTTGACGTTTACATGAAGTTTCTTCA
AGGCTGTGGTGATAGTGGTAGGATAGTATTGCTTCAATCAGCTGTGTATG
GACTCCGCCAGTCTGGCCGCAGATGGAATCGTTTGCTTACAAAG
back to top