mRNA_H-elongata_contig178572.4715.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig178572.4715.1
Unique NamemRNA_H-elongata_contig178572.4715.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig178572.4715.1 vs. uniprot
Match: D7FT88_ECTSI (Putative glutamate/ornithine acetyltransferase (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT88_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 9.780e-33
Identity = 70/97 (72.16%), Postives = 84/97 (86.60%), Query Frame = 1
Query:   28 HKGEAQIAVVDLLGILSGIGLCGLVGTSRRSILAAYILLSMVDISAIYLEIRAVVFTVLNHERTHLLAQDYLACGSDPVAMVEAPAAVSPRSPSLSS 318
            H+GEAQIAVVD+LG+LSGIGLC LVGTSR++I+AAY++LS+VDISAIY EIRAV F+VLNHERTHLL +D++A GSDP AM + P  V PRSP  SS
Sbjct:  347 HEGEAQIAVVDVLGMLSGIGLCTLVGTSRQTIVAAYVILSLVDISAIYNEIRAVCFSVLNHERTHLLVRDFVASGSDPSAMAQTP--VVPRSPYSSS 441          
BLAST of mRNA_H-elongata_contig178572.4715.1 vs. uniprot
Match: A0A0G4G9L5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G9L5_9ALVE)

HSP 1 Score: 88.2 bits (217), Expect = 3.800e-18
Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   10 NIEPSCHKGEAQIAVVDLLGILSGIGLCGLVGTSRRSILAAYILLSMVDISAIYLEIRAVVFTVLNHERTHLLA 231
            NI     KGEAQ+AVVDL+G+LSGI LC L+GT+ RSI  AY+ LS VDIS IY EIR+VVF  LN+ER+HL A
Sbjct:  504 NIGDITAKGEAQVAVVDLMGMLSGIALCRLIGTAPRSIALAYMCLSCVDISCIYKEIRSVVFRWLNNERSHLCA 577          
BLAST of mRNA_H-elongata_contig178572.4715.1 vs. uniprot
Match: A0A7S2XVP0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVP0_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.540e-17
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   37 EAQIAVVDLLGILSGIGLCGLVGTSRRSILAAYILLSMVDISAIYLEIRAVVFTVLNHERTHLLAQDYLACGSDPV 264
            EAQIA+VDL+GI  GI L  ++GTSR  +  AY++LS VDI AIY EI+AVVF V+NHER  LLAQ Y+    DP+
Sbjct:    1 EAQIAIVDLIGIFLGISLSKMIGTSRLGLGLAYLILSGVDIFAIYKEIQAVVFRVMNHERAVLLAQSYVMSSGDPL 76          
BLAST of mRNA_H-elongata_contig178572.4715.1 vs. uniprot
Match: A0A7S2WMF6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMF6_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 8.640e-15
Identity = 47/85 (55.29%), Postives = 58/85 (68.24%), Query Frame = 1
Query:   10 NIEPSCHKGEAQIAVVDLLGILSGIGLCGLVGTSRRSILAAYILLSMVDISAIYLEIRAVVFTVLNHERTHLLAQDYLACGSDPV 264
            NI     KGEAQIAVVDLLG++ GI L   VGTSR SI   Y++LS VDI +IY EIR+VVF  LN ERT ++ + Y+A  +  V
Sbjct:  269 NIGEISAKGEAQIAVVDLLGMMFGICLSHAVGTSRLSIGLTYLVLSCVDIFSIYQEIRSVVFHTLNFERTGIVLRKYIASNASVV 353          
BLAST of mRNA_H-elongata_contig178572.4715.1 vs. uniprot
Match: A0A7S3YC27_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YC27_HETAK)

HSP 1 Score: 76.6 bits (187), Expect = 4.020e-14
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 1
Query:   10 NIEPSCHKGEAQIAVVDLLGILSGIGLCGLVGTSRRSILAAYILLSMVDISAIYLEIRAVVFTVLNHERTHLLAQDYLACGSDPVA 267
            NI     KGEAQI++VDLLG+ +GI     +GTS+  +  AY+  S V++ AIY EIRAVVF  LNHERT L A+ +L  G  P A
Sbjct:  284 NIGDITAKGEAQISLVDLLGMCAGIAASKAIGTSKAKLALAYLGCSAVELFAIYREIRAVVFRTLNHERTLLAAERFLQGGCAPAA 369          
BLAST of mRNA_H-elongata_contig178572.4715.1 vs. uniprot
Match: A0A0G4FQL3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FQL3_VITBC)

HSP 1 Score: 75.9 bits (185), Expect = 7.960e-14
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   10 NIEPSCHKGEAQIAVVDLLGILSGIGLCGLVGTSRRSILAAYILLSMVDISAIYLEIRAVVFTVLNHERTHLLAQDYL 243
            NI     KGEAQ+AVVDLLG+  GI L  ++GT + SI  AYI+LS +D+ AIY EIR+VVF  LNHER +++   ++
Sbjct:  422 NIGDITAKGEAQVAVVDLLGMCFGITLSRMIGTGQASIGLAYIILSTIDMYAIYREIRSVVFRWLNHERANMVISQFV 499          
BLAST of mRNA_H-elongata_contig178572.4715.1 vs. uniprot
Match: W7TAG4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAG4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.720e-13
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 1
Query:   10 NIEPSCHKGEAQIAVVDLLGILSGIGLCGLVGTSRRSILAAYILLSMVDISAIYLEIRAVVFTVLNHERTHLLAQDYLACGSDPV 264
            N+     KGEAQIAVVDLLGIL GI L  ++GT++  +  AYI LS VD+ AIY EIR+VVF+ LN ER  ++ Q +   G + V
Sbjct:  390 NLGDITAKGEAQIAVVDLLGILLGIFLSKMIGTAQVGMAVAYIALSCVDVFAIYNEIRSVVFSSLNLERGAMVVQGFARQGPEGV 474          
BLAST of mRNA_H-elongata_contig178572.4715.1 vs. uniprot
Match: A0A835YQZ5_9STRA (Vitamin B6 photo-protection and homoeostasis-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQZ5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.910e-12
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   10 NIEPSCHKGEAQIAVVDLLGILSGIGLCGLVGTSRRSILAAYILLSMVDISAIYLEIRAVVFTVL 204
            NI     KGEAQIA VDLLG++ GI L   +GTSR SI AAY+LLS +DI AIY EIR+VVFT+L
Sbjct:  301 NIGDITAKGEAQIACVDLLGLMGGICLSKALGTSRVSIGAAYVLLSAIDIFAIYHEIRSVVFTML 365          
BLAST of mRNA_H-elongata_contig178572.4715.1 vs. uniprot
Match: A0A7S3PX85_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PX85_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.390e-12
Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   10 NIEPSCHKGEAQIAVVDLLGILSGIGLCGLVGTSRRSILAAYILLSMVDISAIYLEIRAVVFTVLNHERTHLLAQDYL 243
            N+     KGEAQ+A+VDL GI+SG+ L  L+GTS RS++  +ILL + ++S +Y ++R VVF +LN ER  ++   +L
Sbjct:  299 NLGDITAKGEAQVAIVDLFGIISGVCLSKLIGTSVRSVILIWILLQVFEVSCVYKQLRHVVFRMLNFERLSMVTNSFL 376          
BLAST of mRNA_H-elongata_contig178572.4715.1 vs. uniprot
Match: A0A7S2YQJ9_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YQJ9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.410e-12
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   10 NIEPSCHKGEAQIAVVDLLGILSGIGLCGLVGTSRRSILAAYILLSMVDISAIYLEIRAVVFTVLNHERTHLLAQDYLACGSDP----VAMVEAPAAVSP 297
            NI     KGEAQIA+VDLLGI SG+ L  +VGTS +S+L  Y +L  ++I  +Y +IR VV+ VLN ER   + +D+L     P    VA+V     VSP
Sbjct:  327 NIGDITAKGEAQIAIVDLLGIGSGVTLSRVVGTSVQSVLGVYAVLQALEILCMYKQIRTVVYRVLNFERMAAVIEDFLDATLTPDGKSVAVVNGAETVSP 426          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178572.4715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT88_ECTSI9.780e-3372.16Putative glutamate/ornithine acetyltransferase (IS... [more]
A0A0G4G9L5_9ALVE3.800e-1864.86Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S2XVP0_9STRA2.540e-1759.21Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2WMF6_9STRA8.640e-1555.29Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3YC27_HETAK4.020e-1451.16Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0G4FQL3_VITBC7.960e-1452.56Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
W7TAG4_9STRA3.720e-1351.76Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A835YQZ5_9STRA1.910e-1264.62Vitamin B6 photo-protection and homoeostasis-domai... [more]
A0A7S3PX85_9STRA2.390e-1244.87Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2YQJ9_9STRA2.410e-1246.00Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig178572contigH-elongata_contig178572:453..770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue2e-28
Seed eggNOG ortholog2880.D7FT88
EggNOG free text desc.response to UV-B
EggNOG OGsKOG4249@1,KOG4249@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionputative glutamate/ornithine acetyltransferase (ISS)
Ec32 orthologEc-06_003690.1
Exons1
Model size318
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930031.2148464-CDS-H-elongata_contig178572:452..7701622930031.2148464-CDS-H-elongata_contig178572:452..770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178572 453..770 +
1691679253.8267133-CDS-H-elongata_contig178572:452..7701691679253.8267133-CDS-H-elongata_contig178572:452..770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178572 453..770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig178572.4715.1prot_H-elongata_contig178572.4715.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig178572 453..770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig178572.4715.1

>prot_H-elongata_contig178572.4715.1 ID=prot_H-elongata_contig178572.4715.1|Name=mRNA_H-elongata_contig178572.4715.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MCANIEPSCHKGEAQIAVVDLLGILSGIGLCGLVGTSRRSILAAYILLSM
VDISAIYLEIRAVVFTVLNHERTHLLAQDYLACGSDPVAMVEAPAAVSPR
SPSLSS
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mRNA from alignment at H-elongata_contig178572:453..770+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig178572.4715.1 ID=mRNA_H-elongata_contig178572.4715.1|Name=mRNA_H-elongata_contig178572.4715.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig178572:453..770+ (Himanthalia elongata Himel1 dioecious)
ATGTGTGCAAATATCGAACCATCGTGCCACAAAGGAGAGGCGCAGATTGC CGTCGTGGACTTGCTGGGAATCCTCTCGGGGATCGGGCTCTGCGGCCTGG TGGGCACGTCGCGGCGCTCGATTCTCGCCGCGTACATCCTTCTGAGCATG GTGGACATCTCGGCCATCTACCTCGAGATTCGGGCGGTGGTGTTCACCGT CCTCAACCACGAACGGACCCACCTCCTGGCGCAAGATTATCTTGCCTGTG GAAGTGACCCCGTTGCGATGGTCGAGGCCCCCGCCGCGGTGTCTCCCCGA TCCCCCTCTCTGTCTTCC
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Coding sequence (CDS) from alignment at H-elongata_contig178572:453..770+

>mRNA_H-elongata_contig178572.4715.1 ID=mRNA_H-elongata_contig178572.4715.1|Name=mRNA_H-elongata_contig178572.4715.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig178572:453..770+ (Himanthalia elongata Himel1 dioecious)
ATGTGTGCAAATATCGAACCATCGTGCCACAAAGGAGAGGCGCAGATTGC
CGTCGTGGACTTGCTGGGAATCCTCTCGGGGATCGGGCTCTGCGGCCTGG
TGGGCACGTCGCGGCGCTCGATTCTCGCCGCGTACATCCTTCTGAGCATG
GTGGACATCTCGGCCATCTACCTCGAGATTCGGGCGGTGGTGTTCACCGT
CCTCAACCACGAACGGACCCACCTCCTGGCGCAAGATTATCTTGCCTGTG
GAAGTGACCCCGTTGCGATGGTCGAGGCCCCCGCCGCGGTGTCTCCCCGA
TCCCCCTCTCTGTCTTCCATGTGTGCAAATATCGAACCATCGTGCCACAA
AGGAGAGGCGCAGATTGCCGTCGTGGACTTGCTGGGAATCCTCTCGGGGA
TCGGGCTCTGCGGCCTGGTGGGCACGTCGCGGCGCTCGATTCTCGCCGCG
TACATCCTTCTGAGCATGGTGGACATCTCGGCCATCTACCTCGAGATTCG
GGCGGTGGTGTTCACCGTCCTCAACCACGAACGGACCCACCTCCTGGCGC
AAGATTATCTTGCCTGTGGAAGTGACCCCGTTGCGATGGTCGAGGCCCCC
GCCGCGGTGTCTCCCCGATCCCCCTCTCTGTCTTCC
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