mRNA_H-elongata_contig17856.4712.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17856.4712.1
Unique NamemRNA_H-elongata_contig17856.4712.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig17856.4712.1 vs. uniprot
Match: D8LI40_ECTSI (A to I editase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI40_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.390e-8
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = -1 
Query:  190 EPPLYVDV-PLDGNRALLLLE----PTDQGA---WRLKSSLRLHLYVSDPPCGDASIYEQQRE 354
            +PPLY  V P + +  +LLLE     TD GA   WRLK  +RLHLY+SD PCGDASIYEQ+R+
Sbjct:  155 QPPLYGGVLPGEDDGRILLLERSPQATDAGACISWRLKPYIRLHLYISDAPCGDASIYEQKRQ 217
[Close]
BLAST of mRNA_H-elongata_contig17856.4712.1 vs. uniprot
Match: A0A7S1YL59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YL59_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.530e-6
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = -1 
Query:  205 GNRALLLLEPTDQGAWRLKSSLRLHLYVSDPPCGDASIY 321
            G     L EPT+ G +RL+ S+RLH+YVSD PCGDA+IY
Sbjct:  104 GRTTKRLTEPTNNGRFRLRESIRLHMYVSDAPCGDATIY 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17856.4712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI40_ECTSI1.390e-857.14A to I editase domain-containing protein n=2 Tax=E... [more]
A0A7S1YL59_9STRA2.530e-658.97Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17856contigH-elongata_contig17856:5153..5578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930030.8955653-CDS-H-elongata_contig17856:5152..55781622930030.8955653-CDS-H-elongata_contig17856:5152..5578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17856 5153..5578 +
1691679253.716559-CDS-H-elongata_contig17856:5152..55781691679253.716559-CDS-H-elongata_contig17856:5152..5578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17856 5153..5578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17856.4712.1prot_H-elongata_contig17856.4712.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17856 5153..5578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17856.4712.1

>prot_H-elongata_contig17856.4712.1 ID=prot_H-elongata_contig17856.4712.1|Name=mRNA_H-elongata_contig17856.4712.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
PRCRCFNRESIYLRARGGGFFRDLYGFDASARRRRRSSGGSNIKLGRRSP
RPTTEIIFILLLPLPLLLIDRRVPAWRVAHVQVQAEGRLQPPRALVGRLQ
QEQRAVAVQGHVDVEGRLGLDPPRNRRGQSRDHFCVGARTLL
back to top

mRNA from alignment at H-elongata_contig17856:5153..5578+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17856.4712.1 ID=mRNA_H-elongata_contig17856.4712.1|Name=mRNA_H-elongata_contig17856.4712.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=426bp|location=Sequence derived from alignment at H-elongata_contig17856:5153..5578+ (Himanthalia elongata Himel1 dioecious)
CCCCGCTGCAGATGCTTCAACCGCGAATCGATTTATCTCCGAGCGCGCGG
CGGTGGCTTCTTTCGCGATCTCTACGGCTTCGACGCCTCCGCAAGAAGAC
GCCGACGCTCCTCCGGCGGGAGTAATATCAAGCTCGGAAGGCGATCGCCG
CGGCCCACGACGGAAATCATATTCATCCTCCTCCTTCCCCTCCCGTTGTT
GCTCATAGATCGACGCGTCCCCGCATGGCGGGTCGCTCACGTACAAGTGC
AGGCGGAGGGACGACTTCAGCCTCCACGCGCCTTGGTCGGTCGGCTCCAG
CAGGAGCAGCGCGCGGTTGCCGTCCAAGGGCACGTCGACGTAGAGGGGAG
GCTCGGCCTTGATCCCCCAAGAAATCGGCGGGGGCAAAGCCGTGATCATT
TCTGCGTCGGCGCGAGAACGCTCCTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig17856:5153..5578+

>mRNA_H-elongata_contig17856.4712.1 ID=mRNA_H-elongata_contig17856.4712.1|Name=mRNA_H-elongata_contig17856.4712.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig17856:5153..5578+ (Himanthalia elongata Himel1 dioecious)
CCCCGCTGCAGATGCTTCAACCGCGAATCGATTTATCTCCGAGCGCGCGG
CGGTGGCTTCTTTCGCGATCTCTACGGCTTCGACGCCTCCGCAAGAAGAC
GCCGACGCTCCTCCGGCGGGAGTAATATCAAGCTCGGAAGGCGATCGCCG
CGGCCCACGACGGAAATCATATTCATCCTCCTCCTTCCCCTCCCGTTGTT
GCTCATAGATCGACGCGTCCCCGCATGGCGGGTCGCTCACGTACAAGTGC
AGGCGGAGGGACGACTTCAGCCTCCACGCGCCTTGGTCGGTCGGCTCCAG
CAGGAGCAGCGCGCGGTTGCCGTCCAAGGGCACGTCGACGTAGAGGGGAG
GCTCGGCCTTGATCCCCCAAGAAATCGGCGGGGGCAAAGCCGTGATCATT
TCTGCGTCGGCGCGAGAACGCTCCTCCCCCGCTGCAGATGCTTCAACCGC
GAATCGATTTATCTCCGAGCGCGCGGCGGTGGCTTCTTTCGCGATCTCTA
CGGCTTCGACGCCTCCGCAAGAAGACGCCGACGCTCCTCCGGCGGGAGTA
ATATCAAGCTCGGAAGGCGATCGCCGCGGCCCACGACGGAAATCATATTC
ATCCTCCTCCTTCCCCTCCCGTTGTTGCTCATAGATCGACGCGTCCCCGC
ATGGCGGGTCGCTCACGTACAAGTGCAGGCGGAGGGACGACTTCAGCCTC
CACGCGCCTTGGTCGGTCGGCTCCAGCAGGAGCAGCGCGCGGTTGCCGTC
CAAGGGCACGTCGACGTAGAGGGGAGGCTCGGCCTTGATCCCCCAAGAAA
TCGGCGGGGGCAAAGCCGTGATCATTTCTGCGTCGGCGCGAGAACGCTCC
TC
back to top