mRNA_H-elongata_contig17835.4703.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17835.4703.1
Unique NamemRNA_H-elongata_contig17835.4703.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17835.4703.1 vs. uniprot
Match: D8LKK9_ECTSI (Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK9_ECTSI)

HSP 1 Score: 423 bits (1087), Expect = 3.640e-144
Identity = 209/299 (69.90%), Postives = 236/299 (78.93%), Query Frame = 1
Query:    1 QVGGHKMMKAMQSLLLLEWAGKGLNGKSRRFVLKTLHDGGRGMVELGFYEKLAHHVEGLGANGEDPERTKLAGFLCPYFGAVKVVNDAHIDDTGEKVAATSAYFLVLQDMCSGLDNPCAMDVKMGRTTVEPGEREEKKLRQLRKYPNQSIVGFRYVGMSWSSFYEGDQEPTKLSMDKSWGANMAVEDMGSGMGTFFHDGTRLRRGRVLCALRKIRELSDFFATQRMFRFYASSLLLTYDSADPPLKGGDDVEDEVEVRMIDFAHAVPADINAEEGEASQEPAAEDVPADKGYLYGDRNV 897
            QVGGHK MK++ +LLLLEW GKG  G S RFVLK LHDGGRG+VELGFYE LA H EG GA G++PERT+LA FLCPYFGAVKV  D H +D GE +  T  +FL+L+D+CSGLDNPCA+DVKMGR TVEPGEREEKK+ QLRKYPNQ +VGFRYVGMSWSSF+EGDQ P K+S  K WGA MAVED G G+  FF+DGTRLRRGRV CALRKIR + DFFA Q++F+FYASSLLLTYDSADP L G  DVE+EV V MIDFAHAVP D + E GE   E      P DKGYLYG  N+
Sbjct:  145 QVGGHKTMKSVPALLLLEWEGKGKGGGSARFVLKILHDGGRGLVELGFYENLARHAEGPGAQGKEPERTELASFLCPYFGAVKVRTDGHTEDDGEVIEPTCMHFLILEDLCSGLDNPCALDVKMGRVTVEPGEREEKKIGQLRKYPNQPMVGFRYVGMSWSSFFEGDQVPEKISQSKKWGAGMAVEDTGGGLARFFYDGTRLRRGRVKCALRKIRAVRDFFARQKIFKFYASSLLLTYDSADPTLPG--DVEEEVAVCMIDFAHAVPVDGDGELGEGPAE-----APGDKGYLYGAENL 436          
BLAST of mRNA_H-elongata_contig17835.4703.1 vs. uniprot
Match: A0A8J2SJY1_9STRA (Kinase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJY1_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.720e-25
Identity = 77/241 (31.95%), Postives = 117/241 (48.55%), Query Frame = 1
Query:   88 RFVLKTLHDGGRGMVELGFYEKLAHHVEGLGANGEDPERTKLAGFLCPYFGAVKVVNDAHIDDTGEKVAATSAYFLVLQDMCSGLDNPCAMDVKMGRTTVEPGEREEKKLRQLRKYPNQSIVGFRYVGMS-WSSFYEGDQEPTKLSMDKSWGANMA-VEDMGSGMGTFFHDGTRLRRGRVLCA--LRKIRELSDFFATQRMFRFYASSLLLTYDSADPPLKGGDDVEDEVEVRMIDFAHAV 798
            R+ LK +  G RG+ E+ FYE+  H  +G+          +L  FLC Y G + +  +A              ++LVL D  + +  PCA+D+K+G  T EP    +K+ +QL KYP Q+ +G R VGM  WS       +   L  DK+WG  +     +  G   FF   + L   R+L    +R++R L D+F  Q    F +SSLLL Y+     L         V++++IDFAH +
Sbjct:   47 RYCLKPVQSGNRGIREVTFYEQCLHRGDGV---------EQLQPFLCDYHGVIVLGTNA-----------CEQHYLVLDDCTNDMARPCALDIKLGTRTTEPNASLKKQRKQLAKYPPQTELGCRLVGMRVWSR-----SQSQYLEFDKAWGFTVRDATGIRHGFIEFFGGHSELTNRRLLTREFIRRLRALLDWFEHQDQLEFISSSLLLVYNGTGEALLA----PQAVQLKIIDFAHVL 258          
BLAST of mRNA_H-elongata_contig17835.4703.1 vs. uniprot
Match: A0A8J2PZU3_9BILA (Kinase n=1 Tax=Cercopithifilaria johnstoni TaxID=2874296 RepID=A0A8J2PZU3_9BILA)

HSP 1 Score: 111 bits (277), Expect = 5.060e-25
Identity = 72/239 (30.13%), Postives = 119/239 (49.79%), Query Frame = 1
Query:   94 VLKTLHDGGRGMVELGFYEKLAHHVEGLGANGEDPERTKLAGFLCPYFGAVKVVNDAHIDDTGEKVAATSAYFLVLQDMCSGLDNPCAMDVKMGRTTVEPGEREEKKLRQLRKYPNQSIVGFRYVGMSWSSFYEGDQEPTKLSMDKSWGANMAVEDMGSGMGTFFHDGTRLRRGRVLCALRKIRELSDFFATQRMFRFYASSLLLTYDSA--DPPLKGGDDVEDEVEVRMIDFAHAVPA 804
            +LK + +G RG+ E+ FY  L +       N E+   TK A F+  ++G   +           +V      F+V++D+      PC MD+KMGR T +P   + K+L +  KYP Q  +GFR  G  +   +  D+   ++  DK WG +  +E++      FF   T  +    +  L ++ +L  +F +QR++ FYASS+LL Y+++   PP          V V++IDF+H  PA
Sbjct:   50 LLKPVQEGVRGVCEVTFYNNLKYR------NDENDVLTKFAVFVPKFYGLKTL-----------RVGGKELEFIVMEDLACRYKCPCIMDIKMGRVTYDPNATKAKRLSEAVKYPEQETLGFRLTG--YRMHFGCDKNDLRVR-DKQWGKSRNLENIVDAFREFFSGRTMEKSYVAVQTLEQLYKLRKWFNSQRVYHFYASSILLAYEASMERPP---------NVLVKLIDFSHVFPA 259          
BLAST of mRNA_H-elongata_contig17835.4703.1 vs. uniprot
Match: A0A044TL98_ONCVO (Kinase n=4 Tax=Onchocerca TaxID=6281 RepID=A0A044TL98_ONCVO)

HSP 1 Score: 109 bits (273), Expect = 1.830e-24
Identity = 73/239 (30.54%), Postives = 116/239 (48.54%), Query Frame = 1
Query:   94 VLKTLHDGGRGMVELGFYEKLAHHVEGLGANGEDPERTKLAGFLCPYFGAVKVVNDAHIDDTGEKVAATSAYFLVLQDMCSGLDNPCAMDVKMGRTTVEPGEREEKKLRQLRKYPNQSIVGFRYVGMSWSSFYEGDQEPTKLSMDKSWGANMAVEDMGSGMGTFFHDGTRLRRGRVLCALRKIRELSDFFATQRMFRFYASSLLLTYDSA--DPPLKGGDDVEDEVEVRMIDFAHAVPA 804
            +LK + +G RG+ E+ FY  L H       N E+   T+ A F+ P F  +K +          +V      F+V++D+      PC MD+KMG+ T +P   + KKL +  KYP Q ++GFR  G      + G +E      DK WG +  +E++      F       +       L ++ +L  +F++QR++ FYASS+LL Y++    PP          V V++IDF+H  PA
Sbjct:   48 LLKPVQEGVRGVCEIAFYNSLKHQ------NDENDVLTEFALFV-PKFHGLKTL----------RVGGKEMEFIVMEDLTYHYKYPCIMDIKMGKVTYDPSATKAKKLSEAVKYPEQEVLGFRLTGYR---MHFGCRENDVRVRDKQWGRSRNMENIAEAFCEFLSGRLMEKSFVARQTLEQLCKLRKWFSSQRIYHFYASSILLIYEACMERPP---------NVFVKLIDFSHVFPA 257          
BLAST of mRNA_H-elongata_contig17835.4703.1 vs. uniprot
Match: A0A1I8A1B3_9BILA (Kinase n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I8A1B3_9BILA)

HSP 1 Score: 106 bits (265), Expect = 2.950e-23
Identity = 85/264 (32.20%), Postives = 128/264 (48.48%), Query Frame = 1
Query:   70 LNGKSRRFVLKTLHDGGRGMVELGFYEKLAH-HVEGLGANGEDPERTK--------------LAGFLCPYFGAVKVVNDAHIDDTGEKVAATSAYFLVLQDMCSGLDNPCAMDVKMGRTTVEPGEREEKKLRQLRKYPNQSIVGFRYVGMSWSSFYEGDQEPTKLSMDKSWGANMAVEDMGSGMGTFFHDGTRL---RRGRVLCALR-KIRELSDFFATQRMFRFYASSLLLTYDSADPPLKGGDDVEDEVEVRMIDFAHAVPA 804
            L  K    +LK + +G RG  E+  Y +LA    +    +G D ++ K              LA F+  Y G  KV         G K       F+ L+D+      PC MD+KMG+ T +P    EK  R++ KYP Q  +GFR +G      ++ + +   +  DK WG +   E++       F+D  +L   RR +VL   + ++RE+ ++F+ QR++ FYASSLL  YDS DP  +G        +VRMIDF+H  PA
Sbjct:   46 LKEKRGDLILKLVQEGVRGECEVQVYTRLAELRNQSTVEDGGDGDQEKDDVVVNENKIIIQQLASFVPTYHGLTKVA-------LGNK----EREFMKLEDLTVRFRCPCIMDIKMGKVTFDPLATAEKSAREMSKYPEQQKLGFRILGYR---LHKSNDDV--MIADKKWGLSWKFENIDDA----FNDYMQLTDDRRTQVLSIFKDRLREIHEWFSRQRIYHFYASSLLFIYDS-DPTEEGL-----LADVRMIDFSHTFPA 283          
BLAST of mRNA_H-elongata_contig17835.4703.1 vs. uniprot
Match: A0A1P6CCV5_BRUMA (Kinase n=4 Tax=Brugia TaxID=6278 RepID=A0A1P6CCV5_BRUMA)

HSP 1 Score: 105 bits (263), Expect = 5.120e-23
Identity = 72/240 (30.00%), Postives = 114/240 (47.50%), Query Frame = 1
Query:   94 VLKTLHDGGRGMVELGFYEKLAHHVEGLGANGEDPERTKLAGFLCPYFGAVKVVNDAHIDDTGEKVAATSAYFLVLQDMCSGLDNPCAMDVKMGRTTVEPGEREEKKLRQLRKYPNQSIVGFRYVGMSWSSFYEGDQEPTKLSMDKSWGANMAVEDMGSGMGTFFHDGTRLRRGRVL-CALRKIRELSDFFATQRMFRFYASSLLLTYDSA--DPPLKGGDDVEDEVEVRMIDFAHAVPA 804
            +LK + +G RG+ E+ FY  L H       N E+   T+ A F+  ++G   +           +V      F+V++D+      PC MD+KMGR T +P   + K+L +  KYP Q  +GFR  G        G  E      DK WG +  +E++      F   G  + +  V    L ++ +L  +F +QR++ FYASS+LL Y++    PP          V +++IDF+H  PA
Sbjct:   50 LLKPVQEGVRGVCEVAFYSSLKH------LNDENDVLTRFAVFVPKFYGLKTL-----------RVGRKEMEFIVMEDLAYRYKCPCIMDIKMGRVTYDPSATKAKRLSEAIKYPEQETLGFRLTGYRMRF---GHNENDLRIRDKQWGRSRNLENVVDAFREFL-SGRLMEKSLVAEQTLEQLYKLRKWFNSQRVYHFYASSILLAYEACVERPP---------NVLIKLIDFSHVFPA 259          
BLAST of mRNA_H-elongata_contig17835.4703.1 vs. uniprot
Match: A0A3P7ED91_WUCBA (Protein kinase domain-containing protein n=1 Tax=Wuchereria bancrofti TaxID=6293 RepID=A0A3P7ED91_WUCBA)

HSP 1 Score: 107 bits (268), Expect = 1.890e-22
Identity = 71/239 (29.71%), Postives = 111/239 (46.44%), Query Frame = 1
Query:   94 VLKTLHDGGRGMVELGFYEKLAHHVEGLGANGEDPERTKLAGFLCPYFGAVKVVNDAHIDDTGEKVAATSAYFLVLQDMCSGLDNPCAMDVKMGRTTVEPGEREEKKLRQLRKYPNQSIVGFRYVGMSWSSFYEGDQEPTKLSMDKSWGANMAVEDMGSGMGTFFHDGTRLRRGRVLCALRKIRELSDFFATQRMFRFYASSLLLTYDSA--DPPLKGGDDVEDEVEVRMIDFAHAVPA 804
            +LK + +G RG+ E+ FY  L H       N E+   T+ A F+  ++G   +           +V      F+V++D+      PC MD+KMGR T +P   + K+L +  KYP Q  +GFR  G        G  E      DK WG +  +E++      F       +       L ++ +L  +F +QR++ FYASS+LL Y++    PP          V V++IDF+H  PA
Sbjct:   49 LLKPVQEGVRGVCEVAFYSSLKH------LNDENDVLTRFAAFVPKFYGLKTL-----------RVGRKEMEFIVMEDLAYRYKCPCIMDIKMGRVTYDPSATKAKRLSEAIKYPEQETLGFRLTGYRMRF---GRNENDLRVRDKQWGRSRNLENVVDAFREFLSGRLMEKSSVAEQTLEQLYKLRKWFNSQRVYHFYASSILLAYEACVERPP---------NVLVKLIDFSHVFPA 258          
BLAST of mRNA_H-elongata_contig17835.4703.1 vs. uniprot
Match: A0A0R3S4R6_9BILA (Kinase n=1 Tax=Elaeophora elaphi TaxID=1147741 RepID=A0A0R3S4R6_9BILA)

HSP 1 Score: 103 bits (258), Expect = 2.460e-22
Identity = 67/237 (28.27%), Postives = 112/237 (47.26%), Query Frame = 1
Query:   94 VLKTLHDGGRGMVELGFYEKLAHHVEGLGANGEDPERTKLAGFLCPYFGAVKVVNDAHIDDTGEKVAATSAYFLVLQDMCSGLDNPCAMDVKMGRTTVEPGEREEKKLRQLRKYPNQSIVGFRYVGMSWSSFYEGDQEPTKLSMDKSWGANMAVEDMGSGMGTFFHDGTRLRRGRVLCALRKIRELSDFFATQRMFRFYASSLLLTYDSADPPLKGGDDVEDEVEVRMIDFAHAVPA 804
            +LK + +G RG+ E+ FY  L H       N E+    + A F+  ++G   +           ++      F+V++D+      PC MD+KMGR T +P   + K+L +  KYP Q  +GFR  G        G  +      DK WG +  +E++      F       +R  V   L ++ +L  +F +QR++ FYASS+LL Y++         + +  V +++IDF+H  PA
Sbjct:   50 LLKPVQEGVRGVCEVAFYNNLKHQ------NDENDVLMEFAIFVPKFYGLKTL-----------RIGKKEVEFIVMEDLTYRYKYPCIMDIKMGRVTYDPNATKAKRLAEAIKYPEQETLGFRLAGYRMRF---GCNKNDLRIRDKQWGRSRNLENIVDAFREFLSGRIMEKRFVVEQTLEQLYKLRKWFNSQRVYHFYASSILLAYEACM-------EQQPNVLIKLIDFSHVFPA 259          
BLAST of mRNA_H-elongata_contig17835.4703.1 vs. uniprot
Match: UPI00074FC23C (inositol polyphosphate multikinase n=2 Tax=Gekkota TaxID=8560 RepID=UPI00074FC23C)

HSP 1 Score: 105 bits (263), Expect = 2.870e-22
Identity = 68/210 (32.38%), Postives = 104/210 (49.52%), Query Frame = 1
Query:   94 VLKTLHDGGRGMVELGFYEKLAHHVEGLGANGEDPERTKLAGFLCPYFGAVKVVNDAHIDDTGEKVAATSAYFLVLQDMCSGLDNPCAMDVKMGRTTVEPGEREEKKLRQLRKYPNQSIVGFRYVGMSWSSFYEGDQEPTKLSMDKSWGANMAVEDMGSGMGTFFHDGTRLRRGRVLCALRKIRELSDFFATQRMFRFYASSLLLTYDSA 723
            VLK L    RG  EL FY K+        A+ EDP   +L  +L  Y G            T     A +  +L L+D+     NPC MDVK+G+ + +P    EK  +Q+ KYP    +GF  +GM     +    E    + ++ +G  +  E +  G+  FFH+G  LR+  V+ +++KI+E+  +F +Q+   FYASSLL  YD +
Sbjct:   82 VLKQLQPPPRGPRELEFYNKV------YAADCEDPVFLELRKYLPKYHG------------TWSPPTAPNDLYLKLEDVTHRFKNPCIMDVKIGQKSYDPYASAEKIKQQVSKYPLMEEIGFLVLGMRVYHIHSDSYE----TQNQHYGRGLTKETVKDGVARFFHNGYYLRKDVVIASIQKIKEILQWFESQKHLNFYASSLLFVYDGS 269          
BLAST of mRNA_H-elongata_contig17835.4703.1 vs. uniprot
Match: F1L1V0_ASCSU (Kinase n=1 Tax=Ascaris suum TaxID=6253 RepID=F1L1V0_ASCSU)

HSP 1 Score: 103 bits (257), Expect = 3.480e-22
Identity = 80/282 (28.37%), Postives = 127/282 (45.04%), Query Frame = 1
Query:   79 KSRRFVLKTLHDGGRGMVELGFYEKLAHHVEGLGANGEDPE-------RTKLAGFLCPYFGAVKVVNDAHIDDTGEKVAATSAYFLVLQDMCSGLDNPCAMDVKMGRTTVEPGEREEKKLRQLRKYPNQSIVGFRYVGMSWSSFYEGDQEPTKLSMDKSWGANMAVEDMGSGMGTFFHDGTRLRRGRVLC-ALRKIRELSDFFATQRMFRFYASSLLLTYD-SADPPLKGGDDVEDEVEVRMIDFAHAVPADINAEEGEASQEPAAEDVPADKGYLYGDRNV 897
            K    +LK + DG RG  E+  Y  + + +      G+  +         K A F+  YFG   +            +       LV++D+      PC MD+KMG+ T +P   + K++ +  KYP Q  +GFR +G       EGD  P ++  DK WG +  +E++    G F   G      RV    L ++  + ++F  QR++ FYASS+L+ Y+ S + P +        V VR+IDF+H  PA+         Q P       D+ YL+G  N+
Sbjct:   40 KGSALLLKPVQDGVRGQCEVALYNSVRNWIVEAAPKGQKNQLERDKHVMIKFAEFVPKYFGLKTIF-----------IGPKEVQCLVMEDLTYQYRQPCTMDIKMGKVTYDPNASDAKRISETIKYPAQETLGFRLLGYRMHCT-EGD--PPRVR-DKLWGRSKTLENIVDAYGEFL-SGRSGEENRVAEEVLSQLIAIREWFKEQRIYHFYASSILIVYEASLERPAR--------VRVRLIDFSHVFPAE---------QRP-------DENYLFGLNNM 281          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17835.4703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKK9_ECTSI3.640e-14469.90Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A8J2SJY1_9STRA1.720e-2531.95Kinase n=1 Tax=Pelagomonas calceolata TaxID=35677 ... [more]
A0A8J2PZU3_9BILA5.060e-2530.13Kinase n=1 Tax=Cercopithifilaria johnstoni TaxID=2... [more]
A0A044TL98_ONCVO1.830e-2430.54Kinase n=4 Tax=Onchocerca TaxID=6281 RepID=A0A044T... [more]
A0A1I8A1B3_9BILA2.950e-2332.20Kinase n=1 Tax=Steinernema glaseri TaxID=37863 Rep... [more]
A0A1P6CCV5_BRUMA5.120e-2330.00Kinase n=4 Tax=Brugia TaxID=6278 RepID=A0A1P6CCV5_... [more]
A0A3P7ED91_WUCBA1.890e-2229.71Protein kinase domain-containing protein n=1 Tax=W... [more]
A0A0R3S4R6_9BILA2.460e-2228.27Kinase n=1 Tax=Elaeophora elaphi TaxID=1147741 Rep... [more]
UPI00074FC23C2.870e-2232.38inositol polyphosphate multikinase n=2 Tax=Gekkota... [more]
F1L1V0_ASCSU3.480e-2228.37Kinase n=1 Tax=Ascaris suum TaxID=6253 RepID=F1L1V... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17835contigH-elongata_contig17835:45..2520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score411.0
Seed ortholog evalue4.7e-112
Seed eggNOG ortholog2880.D8LKK9
Preferred nameIPMK
KEGG rclassRC00002,RC00078,RC01938
KEGG koko:K00915
KEGG ReactionR03478,R05800,R05801,R10065,R10953
KEGG Pathwayko00562,ko01100,ko04070,ko04138,map00562,map01100,map04070,map04138
KEGG ModuleM00132
GOsGO:0000823,GO:0000824,GO:0000825,GO:0001838,GO:0001841,GO:0002009,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006066,GO:0006793,GO:0006796,GO:0007275,GO:0007399,GO:0007444,GO:0008150,GO:0008152,GO:0008440,GO:0009058,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0016301,GO:0016310,GO:0016331,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0019751,GO:0021915,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032958,GO:0035148,GO:0035239,GO:0035295,GO:0043009,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043647,GO:0044237,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046165,GO:0046173,GO:0047326,GO:0048513,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0051765,GO:0051766,GO:0060429,GO:0060562,GO:0070013,GO:0071704,GO:0072175,GO:0090407,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.inositol phosphate biosynthetic process
EggNOG OGsKOG1620@1,KOG1620@2759
Ec32 ortholog descriptionInositol polyphosphate kinase
Ec32 orthologEc-16_003350.1
EC2.7.1.140,2.7.1.151
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size897
Cds size879
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17835.4703.1prot_H-elongata_contig17835.4703.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17835 45..2502 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930030.1623096-CDS-H-elongata_contig17835:44..3601622930030.1623096-CDS-H-elongata_contig17835:44..360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17835 45..360 -
1691679253.2685676-CDS-H-elongata_contig17835:44..3601691679253.2685676-CDS-H-elongata_contig17835:44..360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17835 45..360 -
1622930030.188001-CDS-H-elongata_contig17835:963..11391622930030.188001-CDS-H-elongata_contig17835:963..1139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17835 964..1139 -
1691679253.2844436-CDS-H-elongata_contig17835:963..11391691679253.2844436-CDS-H-elongata_contig17835:963..1139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17835 964..1139 -
1622930030.204065-CDS-H-elongata_contig17835:1482..16951622930030.204065-CDS-H-elongata_contig17835:1482..1695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17835 1483..1695 -
1691679253.293483-CDS-H-elongata_contig17835:1482..16951691679253.293483-CDS-H-elongata_contig17835:1482..1695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17835 1483..1695 -
1622930030.21908-CDS-H-elongata_contig17835:2328..25021622930030.21908-CDS-H-elongata_contig17835:2328..2502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17835 2329..2502 -
1691679253.3028772-CDS-H-elongata_contig17835:2328..25021691679253.3028772-CDS-H-elongata_contig17835:2328..2502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17835 2329..2502 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930030.2296512-UTR-H-elongata_contig17835:2502..25201622930030.2296512-UTR-H-elongata_contig17835:2502..2520Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17835 2503..2520 -
1691679253.314449-UTR-H-elongata_contig17835:2502..25201691679253.314449-UTR-H-elongata_contig17835:2502..2520Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17835 2503..2520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17835.4703.1

>prot_H-elongata_contig17835.4703.1 ID=prot_H-elongata_contig17835.4703.1|Name=mRNA_H-elongata_contig17835.4703.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp
MMKAMQSLLLLEWAGKGLNGKSRRFVLKTLHDGGRGMVELGFYEKLAHHV
EGLGANGEDPERTKLAGFLCPYFGAVKVVNDAHIDDTGEKVAATSAYFLV
LQDMCSGLDNPCAMDVKMGRTTVEPGEREEKKLRQLRKYPNQSIVGFRYV
GMSWSSFYEGDQEPTKLSMDKSWGANMAVEDMGSGMGTFFHDGTRLRRGR
VLCALRKIRELSDFFATQRMFRFYASSLLLTYDSADPPLKGGDDVEDEVE
VRMIDFAHAVPADINAEEGEASQEPAAEDVPADKGYLYGDRNV
back to top

mRNA from alignment at H-elongata_contig17835:45..2520-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17835.4703.1 ID=mRNA_H-elongata_contig17835.4703.1|Name=mRNA_H-elongata_contig17835.4703.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2476bp|location=Sequence derived from alignment at H-elongata_contig17835:45..2520- (Himanthalia elongata Himel1 dioecious)
CAGGTCGGTGGCCACAAGATGATGAAGGCAATGCAATCGCTGCTCCTGCT GGAGTGGGCGGGCAAGGGATTGAATGGCAAGTCCCGCCGCTTTGTGCTCA AGACCTTGCACGACGGGGGCAGGGGTATGGTTGAGCTCGGCTTCTACGAG AAGCTAGCCCATCACGTTGAAGGCCTCGGCGCAAACGGGGAGGTGCGCCC CGATCCCGTCCTTACCAGACCTGACCAGGCCACCCGGTGTTATTCTGTAT AGTCAACGGCAATCTATTCTGTATAGTCAACGGCAATCTATTCTGTATAG TCAACGGCAATCTATTCTGTATAGTCAACGTCAATCTAATCTGTATAGTC AACGTCAATCTATTCTGTATAGTGTATAGTCAACGGCAATCTGTAACGCC GAAGAAGTACCAGGGTTGCTGTGGGACCTGTCATTAGGTTATTGCTCTCT TATATTCGTACATACCGAAAATCGTTTCGTTTCGGGATGGGATGTTGGCG CCGGGGCGAGGTGTTCTCGCGGGTGAGGCTTGCACCCTATTTCATCAATT TGTTTTCTCCTTTTTGAAAATGTAAGACATTGTTTGCCCTAAATATCAAT TTTGAAAACACTCTGCGGAGGCGCTAAAATCACTCATGTTTTGAGCAGAG AGACGGAAGTTCGTTTTTTTTAGATGTATATGCACATATGCACGCCTTTC GGGTCGAAGCCTAGCGATGCCCGTGTCTGCCACCGCTGCTGCTATTGTTG TGGCTGTATGGCTTCCATGCTCCGACCCCCCCACCCCCCCATTCCTCCAA ACGTGCTTTGCTTCCCTCCAATCAGGATCCTGAACGCACAAAGCTTGCCG GCTTCCTGTGTCCCTACTTTGGAGCAGTGAAGGTTGTGAACGACGCCCAC ATTGACGATACGGGCGAGAAGGTAGCGGCGACGTCTGCGTACTTCCTCGT GCTTCAGGATATGTGCAGCGGGCTCGACAATCCCTGTGCCATGGACGTGA AGATGGGCAGGACCACGGTGGAGCCCGGGGAGCGGGAGGTGATTTAAGGC TTCGCGGCTGTTGGTGGTGGCCGAAAATTACGATAATGTCTCCACGACTT ACGTCGATGCCAGTGAAGGGTGTGTATTGTATCGCGAAAGGATCGGTTGT GGTAAAGTCAGCCGTGGTCAATGGTACAGTGGTGAATGGAAACCATACCT TAGTGTTTTCTGAGTGACTTAGTGGTGTAAGCGGAAACTTGAATGTTGTT AGGAGCGAACTACTTCCGTCAAATGCTTTTGGAAGCGTTTTATCCTCATT ACACCGTTTCCTGTATTCTCACGTCTTGGTGGTACCACGGCACTGTCATC CCCTCCCCCCGCGGGTTTCATACCTCCTTAGGAAAAGAAATTGAGGCAGC TGCGAAAGTACCCCAACCAGTCGATCGTGGGCTTCCGATACGTGGGCATG AGCTGGTCCAGCTTTTACGAAGGTGATCAGGAGCCAACCAAACTCTCCAT GGACAAGTCATGGGGCGCGAACATGGCTGTCGAGGACATGGGAAGCGGAA TGGGAACGTGAGGACACCTTGTTGTGCCTTTGGCTGCGAGGTTGAAAATA TATAATGTTTTTGAGAACTTGCCTCGTGCGTGCGAGACTGTGTCTGGTAG GCCGCAGCGGGCGCTTGTCTGTTTTCCGACTAGGGAGGAAAACACGGTGG CTCTTCAAAGCCTCCTGCCCGCAAAATCCGCAGTCGCTATATCTGCGCAT GGGGACGGGGAACGGGGGGGTCATACATTTATGACTTGGTGGCGGTTAAG ATAATCTTGATCCTCGCTGGTGTCATCGAAGGGGTTTAGAGGATAGATTA TCCGACGCCCAGAAATTCTGAATCTTCCCAAACCTCCGCCGTCACGGAGA ACCGAAGCCTAAATGGGTAAGTTGGCTCATGTTCTGAGTCGAGCTTTAGG CAATGCGCGGGGCATTTTTACCGACGAAGGGCTGTCCCCTGTTTGAAGAG GACGGAGAAATGGTGTGCTGCTCAACTCCAATGAAACACTTCAACGGGGG TCCCAGGATAGGACCACGAGGATGGAAGGCGATTAATACTTTTTGCCATA AAACCCCCCATAAAGAAATACATTCCTGTCCTTTCAATTGACAACCGTTA TTTCAACCAGGTTCTTTCACGATGGCACGCGTCTACGCCGAGGACGCGTC CTGTGCGCCCTCCGCAAGATTCGGGAATTGTCAGACTTCTTCGCCACCCA AAGGATGTTCAGGTTCTACGCCAGCTCCCTTCTCTTGACGTACGACTCGG CCGACCCTCCCTTGAAAGGCGGCGATGACGTGGAAGACGAGGTGGAAGTC CGCATGATTGATTTTGCGCACGCCGTGCCCGCAGACATCAATGCGGAAGA GGGTGAAGCGAGCCAAGAGCCTGCCGCGGAAGATGTACCCGCGGATAAGG GGTACCTGTATGGGGATAGAAATGTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig17835:45..2520-

>mRNA_H-elongata_contig17835.4703.1 ID=mRNA_H-elongata_contig17835.4703.1|Name=mRNA_H-elongata_contig17835.4703.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1758bp|location=Sequence derived from alignment at H-elongata_contig17835:45..2520- (Himanthalia elongata Himel1 dioecious)
ATGATGAAGGCAATGCAATCGCTGCTCCTGCTGGAGTGGGCGGGCAAGGG
ATTGAATGGCAAGTCCCGCCGCTTTGTGCTCAAGACCTTGCACGACGGGG
GCAGGGGTATGGTTGAGCTCGGCTTCTACGAGAAGCTAGCCCATCACGTT
GAAGGCCTCGGCGCAAACGGGGAGATGATGAAGGCAATGCAATCGCTGCT
CCTGCTGGAGTGGGCGGGCAAGGGATTGAATGGCAAGTCCCGCCGCTTTG
TGCTCAAGACCTTGCACGACGGGGGCAGGGGTATGGTTGAGCTCGGCTTC
TACGAGAAGCTAGCCCATCACGTTGAAGGCCTCGGCGCAAACGGGGAGGA
TCCTGAACGCACAAAGCTTGCCGGCTTCCTGTGTCCCTACTTTGGAGCAG
TGAAGGTTGTGAACGACGCCCACATTGACGATACGGGCGAGAAGGTAGCG
GCGACGTCTGCGTACTTCCTCGTGCTTCAGGATATGTGCAGCGGGCTCGA
CAATCCCTGTGCCATGGACGTGAAGATGGGCAGGACCACGGTGGAGCCCG
GGGAGCGGGAGGATCCTGAACGCACAAAGCTTGCCGGCTTCCTGTGTCCC
TACTTTGGAGCAGTGAAGGTTGTGAACGACGCCCACATTGACGATACGGG
CGAGAAGGTAGCGGCGACGTCTGCGTACTTCCTCGTGCTTCAGGATATGT
GCAGCGGGCTCGACAATCCCTGTGCCATGGACGTGAAGATGGGCAGGACC
ACGGTGGAGCCCGGGGAGCGGGAGGAAAAGAAATTGAGGCAGCTGCGAAA
GTACCCCAACCAGTCGATCGTGGGCTTCCGATACGTGGGCATGAGCTGGT
CCAGCTTTTACGAAGGTGATCAGGAGCCAACCAAACTCTCCATGGACAAG
TCATGGGGCGCGAACATGGCTGTCGAGGACATGGGAAGCGGAATGGGAAC
GAAAAGAAATTGAGGCAGCTGCGAAAGTACCCCAACCAGTCGATCGTGGG
CTTCCGATACGTGGGCATGAGCTGGTCCAGCTTTTACGAAGGTGATCAGG
AGCCAACCAAACTCTCCATGGACAAGTCATGGGGCGCGAACATGGCTGTC
GAGGACATGGGAAGCGGAATGGGAACGTTCTTTCACGATGGCACGCGTCT
ACGCCGAGGACGCGTCCTGTGCGCCCTCCGCAAGATTCGGGAATTGTCAG
ACTTCTTCGCCACCCAAAGGATGTTCAGGTTCTACGCCAGCTCCCTTCTC
TTGACGTACGACTCGGCCGACCCTCCCTTGAAAGGCGGCGATGACGTGGA
AGACGAGGTGGAAGTCCGCATGATTGATTTTGCGCACGCCGTGCCCGCAG
ACATCAATGCGGAAGAGGGTGAAGCGAGCCAAGAGCCTGCCGCGGAAGAT
GTACCCGCGGATAAGGGGTACCTGTATGGGGATAGAAATGTAGTTCTTTC
ACGATGGCACGCGTCTACGCCGAGGACGCGTCCTGTGCGCCCTCCGCAAG
ATTCGGGAATTGTCAGACTTCTTCGCCACCCAAAGGATGTTCAGGTTCTA
CGCCAGCTCCCTTCTCTTGACGTACGACTCGGCCGACCCTCCCTTGAAAG
GCGGCGATGACGTGGAAGACGAGGTGGAAGTCCGCATGATTGATTTTGCG
CACGCCGTGCCCGCAGACATCAATGCGGAAGAGGGTGAAGCGAGCCAAGA
GCCTGCCGCGGAAGATGTACCCGCGGATAAGGGGTACCTGTATGGGGATA
GAAATGTA
back to top