mRNA_H-elongata_contig178312.4701.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig178312.4701.1
Unique NamemRNA_H-elongata_contig178312.4701.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178312.4701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig178312contigH-elongata_contig178312:691..1291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size603
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930030.0246813-UTR-H-elongata_contig178312:690..9701622930030.0246813-UTR-H-elongata_contig178312:690..970Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig178312 691..970 +
1691679253.2033806-UTR-H-elongata_contig178312:690..9701691679253.2033806-UTR-H-elongata_contig178312:690..970Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig178312 691..970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930030.0441396-CDS-H-elongata_contig178312:970..12911622930030.0441396-CDS-H-elongata_contig178312:970..1291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178312 971..1291 +
1691679253.2125063-CDS-H-elongata_contig178312:970..12911691679253.2125063-CDS-H-elongata_contig178312:970..1291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178312 971..1291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig178312.4701.1prot_H-elongata_contig178312.4701.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig178312 971..1291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig178312.4701.1

>prot_H-elongata_contig178312.4701.1 ID=prot_H-elongata_contig178312.4701.1|Name=mRNA_H-elongata_contig178312.4701.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
METSRQANKKQKTHDAALASTQSGIRQIFTAKGQLDTDAAYTRFVFATGQ
SFGVADNIYFKDCLAAVRANPAWGVRDRRTVSTTDLDAEYARVEKQSKAK
LEERGLQ
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mRNA from alignment at H-elongata_contig178312:691..1291+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig178312.4701.1 ID=mRNA_H-elongata_contig178312.4701.1|Name=mRNA_H-elongata_contig178312.4701.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=601bp|location=Sequence derived from alignment at H-elongata_contig178312:691..1291+ (Himanthalia elongata Himel1 dioecious)
CATATGCCTGGCAGCGATGGCGCTTCCTGGCTATCGCGCGTGGTTCAGCG
ACCGACGGATAAAGGGGGTCGTGCAGGCCTGCTGGCGTTTGTAGATGTGG
CCAACCCGAACGCAGCGGTGGTGAGCACAATAGTCACGTGCAAGGTATGC
AAGAAAAAGTTTGCGGGCACCAAAAAAACGACTGGCAGCTCACTTCGCCG
GCGTGGCGAATTTTGGTGTAGGCGCTTATCCCAAACCTTCTCCTGAGGCC
GCCATTCTCGGCAAGAATGTTCTTGAGGAGATGGAGACTTCGCGGCAGGC
AAACAAGAAGCAGAAGACCCACGACGCCGCGTTGGCCTCCACGCAATCAG
GCATTCGACAGATCTTCACCGCCAAAGGCCAGCTCGATACGGACGCGGCG
TATACCCGCTTTGTCTTTGCAACCGGCCAATCGTTTGGGGTCGCTGACAA
CATCTACTTCAAGGACTGCCTGGCGGCGGTTCGCGCCAACCCGGCCTGGG
GGGTAAGAGACAGGAGAACCGTCTCCACCACCGACTTGGACGCGGAGTAC
GCTAGGGTGGAGAAGCAGAGCAAGGCCAAGCTGGAGGAACGTGGCCTTCA
G
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Coding sequence (CDS) from alignment at H-elongata_contig178312:691..1291+

>mRNA_H-elongata_contig178312.4701.1 ID=mRNA_H-elongata_contig178312.4701.1|Name=mRNA_H-elongata_contig178312.4701.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig178312:691..1291+ (Himanthalia elongata Himel1 dioecious)
ATGGAGACTTCGCGGCAGGCAAACAAGAAGCAGAAGACCCACGACGCCGC
GTTGGCCTCCACGCAATCAGGCATTCGACAGATCTTCACCGCCAAAGGCC
AGCTCGATACGGACGCGGCGTATACCCGCTTTGTCTTTGCAACCGGCCAA
TCGTTTGGGGTCGCTGACAACATCTACTTCAAGGACTGCCTGGCGGCGGT
TCGCGCCAACCCGGCCTGGGGGGTAAGAGACAGGAGAACCGTCTCCACCA
CCGACTTGGACGCGGAGTACGCTAGGGTGGAGAAGCAGAGCAAGGCCAAG
CTGGAGGAACGTGGCCTTCAGATGGAGACTTCGCGGCAGGCAAACAAGAA
GCAGAAGACCCACGACGCCGCGTTGGCCTCCACGCAATCAGGCATTCGAC
AGATCTTCACCGCCAAAGGCCAGCTCGATACGGACGCGGCGTATACCCGC
TTTGTCTTTGCAACCGGCCAATCGTTTGGGGTCGCTGACAACATCTACTT
CAAGGACTGCCTGGCGGCGGTTCGCGCCAACCCGGCCTGGGGGGTAAGAG
ACAGGAGAACCGTCTCCACCACCGACTTGGACGCGGAGTACGCTAGGGTG
GAGAAGCAGAGCAAGGCCAAGCTGGAGGAACGTGGCCTTCAG
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