mRNA_H-elongata_contig178272.4700.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig178272.4700.1
Unique NamemRNA_H-elongata_contig178272.4700.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: A0A7S6UA05_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA05_9STRA)

HSP 1 Score: 237 bits (605), Expect = 4.620e-79
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 1
Query:    1 MDNFVVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRFN 372
            MDNFVVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVL GIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRFN
Sbjct:    1 MDNFVVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLQGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRFN 124          
BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: A0A8E6D2H5_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D2H5_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 2.240e-55
Identity = 87/124 (70.16%), Postives = 105/124 (84.68%), Query Frame = 1
Query:    1 MDNFVVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRFN 372
            M+N +++FN   + QS+E  + K+ LP L  GDTVKIGVLIKEG KERIQYYQG++IA+ N GINKTI+VRR++ GIGVER FL+HSPK+ SIEIK+SSRVR+SKLYYLR LSGKASRLKQRFN
Sbjct:    5 MNNLIISFNSTKVFQSLEKPFIKTSLPILSPGDTVKIGVLIKEGNKERIQYYQGVVIAQNNRGINKTILVRRIIQGIGVERTFLLHSPKVESIEIKKSSRVRRSKLYYLRALSGKASRLKQRFN 128          
BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: A0A0K2RWP5_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Triparma laevis TaxID=1534972 RepID=A0A0K2RWP5_9STRA)

HSP 1 Score: 156 bits (395), Expect = 4.130e-47
Identity = 77/119 (64.71%), Postives = 99/119 (83.19%), Query Frame = 1
Query:   13 VVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRF 369
            ++  NK   +  +++++ KSDLPTL +GD VKIGV I EGTKERIQ+Y+G IIAK+N+ +N TI VR++L GIGVER+FLIHSPK+NSI++ RSS+VR+SKLYYLR L GKASRLKQRF
Sbjct:    1 MIIANKQKYLDDLQNQFLKSDLPTLEVGDGVKIGVKIIEGTKERIQFYEGTIIAKKNSSVNTTITVRKILQGIGVERVFLIHSPKVNSIQVLRSSKVRRSKLYYLRNLRGKASRLKQRF 119          
BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: A0A516Z9W5_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A516Z9W5_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.900e-46
Identity = 76/121 (62.81%), Postives = 98/121 (80.99%), Query Frame = 1
Query:    7 NFVVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRF 369
            N +   N  +L+  VE +Y K DLP + +GDTV++GV I+EG K R Q Y+G+II+++N+GINKTI VRRV+ GIGVER FL+HSPK+ +IEIKRSS+VR+SKLYYLR LSGKA+RLKQRF
Sbjct:    4 NEITKINNTALLNKVESEYIKEDLPNVRVGDTVRLGVEIREGKKTRTQAYEGVIISQKNSGINKTITVRRVMQGIGVERCFLLHSPKIKTIEIKRSSKVRRSKLYYLRELSGKATRLKQRF 124          
BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: B2XT92_HETAK (50S ribosomal protein L19, chloroplastic n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT92_HETAK)

HSP 1 Score: 154 bits (388), Expect = 4.380e-46
Identity = 70/113 (61.95%), Postives = 98/113 (86.73%), Query Frame = 1
Query:   31 NSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRF 369
            N ++Q V+ +Y K+D+P + +GDTV++G+LIKEG KER QYY+G+ I+K+N+GINKTI VRR++ GIG+ER+FLIHSPK+ SIEIK+S+ V++SKLYYLR  SGKA+RLKQ++
Sbjct:    5 NLILQKVQQQYLKTDIPNVEVGDTVRLGLLIKEGNKERTQYYEGVTISKKNSGINKTITVRRIMQGIGIERLFLIHSPKIASIEIKKSANVKRSKLYYLRNRSGKATRLKQKY 117          
BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: A0A0R6LUN6_UNDPI (50S ribosomal protein L19, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUN6_UNDPI)

HSP 1 Score: 153 bits (387), Expect = 8.750e-46
Identity = 79/115 (68.70%), Postives = 90/115 (78.26%), Query Frame = 1
Query:   25 NKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRF 369
            N   LI SVE  + K +L  +F+GDTVKIGV IKEG KERIQYYQGII+ K N+GIN TI VR+V  GIGVER FLIHSPK  SIE+ +SSRVR+SKLYYLR + GK SRLKQRF
Sbjct:   11 NDKELIDSVESVHIKKNLSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGINLTISVRKVFQGIGVERNFLIHSPKFESIEVIKSSRVRRSKLYYLRSIVGKGSRLKQRF 125          
BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: A0A2I4Q2C7_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2C7_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.000e-45
Identity = 74/118 (62.71%), Postives = 97/118 (82.20%), Query Frame = 1
Query:   22 FNKN--SLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRF 369
            F+KN  +LI SVE  Y K+D+  + +GDTVKIG+ IKEG K+RIQYYQGI+I+K+NTGIN  I+VR+   GIGVER FL+HSPK  S+++ +S+R+R+SKLYYLR +SGKASRLKQ+F
Sbjct:   11 FSKNYKTLIDSVEKLYCKNDIKMVLVGDTVKIGISIKEGNKDRIQYYQGIVISKKNTGINLKIVVRKTFQGIGVERQFLLHSPKFQSVQVLKSARIRRSKLYYLRNISGKASRLKQKF 128          
BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: A0A023HCD8_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A023HCD8_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.770e-45
Identity = 75/119 (63.03%), Postives = 99/119 (83.19%), Query Frame = 1
Query:   13 VVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRF 369
            ++T N + +I+++++++ K ++P + IGD V+IGV I EG KER+QYYQG +IAK+NT IN TI VR+VL GIGVER+FLIHSPK++SI I RS+RVR+SKLYYLR L GKASRLKQRF
Sbjct:    1 MLTLNNSEIIKNLQNQFLKENIPDIAIGDLVEIGVKIIEGNKERVQYYQGNVIAKKNTSINTTITVRKVLQGIGVERIFLIHSPKVDSISILRSARVRRSKLYYLRNLKGKASRLKQRF 119          
BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: A0A514CQ32_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A514CQ32_9STRA)

HSP 1 Score: 152 bits (383), Expect = 3.040e-45
Identity = 76/117 (64.96%), Postives = 97/117 (82.91%), Query Frame = 1
Query:   22 FNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRFN 372
            FNK +L+  VE  Y K DLP + +GDTV++GV IKEG K RIQ ++G++IAK+N GINKTI VRRVL GIGVER FL++SPK+ +IE+ RSS+VR+SKLYYLR L+GKA+RLKQ+FN
Sbjct:    6 FNKTNLMLHVESAYTKKDLPMISVGDTVRLGVEIKEGEKIRIQAFEGVVIAKKNHGINKTITVRRVLQGIGVERCFLVNSPKIKTIELIRSSKVRRSKLYYLRDLAGKATRLKQKFN 122          
BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: A0A1Z8UKX8_9PROT (50S ribosomal protein L19 n=2 Tax=cellular organisms TaxID=131567 RepID=A0A1Z8UKX8_9PROT)

HSP 1 Score: 152 bits (383), Expect = 3.240e-45
Identity = 72/112 (64.29%), Postives = 94/112 (83.93%), Query Frame = 1
Query:   37 LIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRFN 372
            L+ +VE KY K D+P + IGDT+K+G+ IKEG K R+Q Y+G++I+K+  GIN T+ VRR++ GIG+ER FLIHSPK+ SIEIKRSS+VR++KLYYLR LSGKA+RLKQRFN
Sbjct:   14 LLNTVESKYLKVDIPNIRIGDTLKLGIEIKEGEKTRVQAYEGVVISKKGAGINLTVTVRRIMQGIGIERCFLIHSPKVKSIEIKRSSKVRRAKLYYLRNLSGKATRLKQRFN 125          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6UA05_9STRA4.620e-7999.1950S ribosomal protein L19, chloroplastic n=1 Tax=S... [more]
A0A8E6D2H5_9PHAE2.240e-5570.1650S ribosomal protein L19, chloroplastic n=1 Tax=I... [more]
A0A0K2RWP5_9STRA4.130e-4764.7150S ribosomal protein L19, chloroplastic n=1 Tax=T... [more]
A0A516Z9W5_9STRA1.900e-4662.8150S ribosomal protein L19, chloroplastic n=1 Tax=F... [more]
B2XT92_HETAK4.380e-4661.9550S ribosomal protein L19, chloroplastic n=3 Tax=H... [more]
A0A0R6LUN6_UNDPI8.750e-4668.7050S ribosomal protein L19, chloroplastic n=25 Tax=... [more]
A0A2I4Q2C7_9PHAE2.000e-4562.7150S ribosomal protein L19, chloroplastic n=1 Tax=D... [more]
A0A023HCD8_9STRA2.770e-4563.0350S ribosomal protein L19, chloroplastic n=1 Tax=L... [more]
A0A514CQ32_9STRA3.040e-4564.9650S ribosomal protein L19, chloroplastic n=1 Tax=R... [more]
A0A1Z8UKX8_9PROT3.240e-4564.2950S ribosomal protein L19 n=2 Tax=cellular organis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig178272contigH-elongata_contig178272:657..1031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue1.6e-32
Seed eggNOG ortholog2880.D1J767
Preferred namerpl19
KEGG koko:K02884
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0335@1,KOG1698@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930029.9777184-CDS-H-elongata_contig178272:656..10311622930029.9777184-CDS-H-elongata_contig178272:656..1031Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178272 657..1031 +
1691679253.1935456-CDS-H-elongata_contig178272:656..10311691679253.1935456-CDS-H-elongata_contig178272:656..1031Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178272 657..1031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig178272.4700.1prot_H-elongata_contig178272.4700.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig178272 657..1031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig178272.4700.1

>prot_H-elongata_contig178272.4700.1 ID=prot_H-elongata_contig178272.4700.1|Name=mRNA_H-elongata_contig178272.4700.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MDNFVVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQ
YYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSR
VRKSKLYYLRGLSGKASRLKQRFN*
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mRNA from alignment at H-elongata_contig178272:657..1031+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig178272.4700.1 ID=mRNA_H-elongata_contig178272.4700.1|Name=mRNA_H-elongata_contig178272.4700.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at H-elongata_contig178272:657..1031+ (Himanthalia elongata Himel1 dioecious)
ATGGACAATTTTGTAGTTACATTTAATAAAAATTCACTTATCCAATCCGT TGAGCACAAATACTATAAATCTGACTTACCGACATTATTTATAGGAGACA CTGTTAAAATTGGAGTTTTAATTAAAGAAGGTACAAAAGAACGGATACAA TATTACCAAGGAATTATAATAGCAAAACAAAATACAGGTATAAATAAAAC AATTATTGTGAGGCGAGTCCTTCATGGAATAGGTGTTGAACGAATGTTTT TAATTCATTCTCCGAAATTAAATTCAATTGAAATTAAACGCTCGTCACGG GTGAGAAAATCCAAATTATATTATCTACGAGGTTTATCAGGTAAAGCTAG TCGTTTAAAACAAAGGTTTAATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig178272:657..1031+

>mRNA_H-elongata_contig178272.4700.1 ID=mRNA_H-elongata_contig178272.4700.1|Name=mRNA_H-elongata_contig178272.4700.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig178272:657..1031+ (Himanthalia elongata Himel1 dioecious)
ATGGACAATTTTGTAGTTACATTTAATAAAAATTCACTTATCCAATCCGT
TGAGCACAAATACTATAAATCTGACTTACCGACATTATTTATAGGAGACA
CTGTTAAAATTGGAGTTTTAATTAAAGAAGGTACAAAAGAACGGATACAA
TATTACCAAGGAATTATAATAGCAAAACAAAATACAGGTATAAATAAAAC
AATTATTGTGAGGCGAGTCCTTCATGGAATAGGTGTTGAACGAATGTTTT
TAATTCATTCTCCGAAATTAAATTCAATTGAAATTAAACGCTCGTCACGG
GTGAGAAAATCCAAATTATATTATCTACGAGGTTTATCAGGTAAAGCTAG
TCGTTTAAAACAAAGGTTTAATTAAATGGACAATTTTGTAGTTACATTTA
ATAAAAATTCACTTATCCAATCCGTTGAGCACAAATACTATAAATCTGAC
TTACCGACATTATTTATAGGAGACACTGTTAAAATTGGAGTTTTAATTAA
AGAAGGTACAAAAGAACGGATACAATATTACCAAGGAATTATAATAGCAA
AACAAAATACAGGTATAAATAAAACAATTATTGTGAGGCGAGTCCTTCAT
GGAATAGGTGTTGAACGAATGTTTTTAATTCATTCTCCGAAATTAAATTC
AATTGAAATTAAACGCTCGTCACGGGTGAGAAAATCCAAATTATATTATC
TACGAGGTTTATCAGGTAAAGCTAGTCGTTTAAAACAAAGGTTTAATTAA
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