mRNA_H-elongata_contig178090.4693.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig178090.4693.1
Unique NamemRNA_H-elongata_contig178090.4693.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig178090.4693.1 vs. uniprot
Match: D7FVJ5_ECTSI (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ5_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.210e-12
Identity = 35/47 (74.47%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 GHADRARIDIRDLNMAGLPSLRRGCEDRAVVVVAKHLCGAATDLALR 141
            G + RARIDIRDLNM GLPSL    +DR VV VAKHLCG ATDLALR
Sbjct:  260 GVSTRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALR 306
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BLAST of mRNA_H-elongata_contig178090.4693.1 vs. uniprot
Match: A0A6H5KUX2_9PHAE (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUX2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.250e-12
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 GHADRARIDIRDLNMAGLPSLRRGCEDRAVVVVAKHLCGAATDLALRQ 144
            G + RARIDIRDL+M GLPSL    +DR VV VAKHLCG ATDLALR+
Sbjct:  283 GVSTRARIDIRDLDMGGLPSLTAAGDDRPVVAVAKHLCGVATDLALRR 330
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BLAST of mRNA_H-elongata_contig178090.4693.1 vs. uniprot
Match: A0A821F753_9BILA (tRNA:m(4)X modification enzyme TRM13 n=8 Tax=Rotaria TaxID=231623 RepID=A0A821F753_9BILA)

HSP 1 Score: 56.2 bits (134), Expect = 6.780e-8
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   10 DRARIDIRDLNMAGLPSLRRGCEDRAVVVVAKHLCGAATDLALR 141
            +R R+DIRDL +A LPS++    ++  V+++KHLCG ATDLALR
Sbjct:  234 ERYRLDIRDLYLAELPSIKNSQSEKHTVIISKHLCGGATDLALR 277
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BLAST of mRNA_H-elongata_contig178090.4693.1 vs. uniprot
Match: A0A817CAC3_9BILA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817CAC3_9BILA)

HSP 1 Score: 55.1 bits (131), Expect = 1.670e-7
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   10 DRARIDIRDLNMAGLPSLRRGCEDRAVVVVAKHLCGAATDLALR 141
            +R R+DIRDL ++ LPS++     + VV+++KHLCG ATDLALR
Sbjct:  209 ERYRLDIRDLYLSELPSIKNNQFQKQVVIISKHLCGGATDLALR 252
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BLAST of mRNA_H-elongata_contig178090.4693.1 vs. uniprot
Match: A0A817KPL2_9BILA (tRNA:m(4)X modification enzyme TRM13 n=12 Tax=Rotaria TaxID=231623 RepID=A0A817KPL2_9BILA)

HSP 1 Score: 55.1 bits (131), Expect = 1.730e-7
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   10 DRARIDIRDLNMAGLPSLRRGCEDRAVVVVAKHLCGAATDLALR 141
            +R R+DIRDL ++ LPS++     + VV+++KHLCG ATDLALR
Sbjct:  234 ERYRLDIRDLYLSELPSIKNNQFQKQVVIISKHLCGGATDLALR 277
[Close]
BLAST of mRNA_H-elongata_contig178090.4693.1 vs. uniprot
Match: A0A819LP60_9BILA (tRNA:m(4)X modification enzyme TRM13 n=4 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A819LP60_9BILA)

HSP 1 Score: 55.1 bits (131), Expect = 1.740e-7
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   10 DRARIDIRDLNMAGLPSLRRGCEDRAVVVVAKHLCGAATDLALR 141
            +R R+DIRDL ++ LPS++     + VV+++KHLCG ATDLALR
Sbjct:  234 ERYRLDIRDLYLSELPSIKNNQFQKQVVIISKHLCGGATDLALR 277
[Close]
BLAST of mRNA_H-elongata_contig178090.4693.1 vs. uniprot
Match: A0A7S2RS80_9STRA (tRNA:m(4)X modification enzyme TRM13 (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RS80_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.910e-6
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   13 RARIDIRDLNMAGLPSLRRGCEDRAVVVVAKHLCGAATDLALR 141
            RAR+DIR LN+AGL +     + + +V VAKHLCG ATDLALR
Sbjct:  214 RARVDIRHLNLAGLDT-----QGKPMVAVAKHLCGVATDLALR 251
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BLAST of mRNA_H-elongata_contig178090.4693.1 vs. uniprot
Match: A0A5J4NS90_9TREM (tRNA:m(4)X modification enzyme TRM13 (Fragment) n=1 Tax=Paragonimus westermani TaxID=34504 RepID=A0A5J4NS90_9TREM)

HSP 1 Score: 50.4 bits (119), Expect = 3.400e-6
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 GHADRARIDIRDLNMAGLPSLRRGCEDRAVVVVAKHLCGAATDLALR 141
            G+  R R+DI  L++  LPS +  C  + +V +AKHLCG ATDLALR
Sbjct:   15 GNFTRVRMDIAQLDLKSLPSFQNRC--KPIVAIAKHLCGDATDLALR 59
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BLAST of mRNA_H-elongata_contig178090.4693.1 vs. uniprot
Match: B6S350_PHIRO (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Philodina roseola TaxID=96448 RepID=B6S350_PHIRO)

HSP 1 Score: 51.2 bits (121), Expect = 3.990e-6
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   10 DRARIDIRDLNMAGLPSLRRGCEDRAVVVVAKHLCGAATDLALR 141
            +R R+DIRDL +A LP L        VVV++KHLCG ATDLALR
Sbjct:  232 ERFRLDIRDLFLANLPCLTEIQPALDVVVISKHLCGGATDLALR 275
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BLAST of mRNA_H-elongata_contig178090.4693.1 vs. uniprot
Match: UPI001402B1B5 (tRNA:m(4)X modification enzyme TRM13 homolog n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI001402B1B5)

HSP 1 Score: 50.8 bits (120), Expect = 5.450e-6
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   10 DRARIDIRDLNMAGLPSLRRGCEDRAVVVVAKHLCGAATDLALR 141
            +R +IDI DLN++ +P L R  E   VV + KHLCGAATDLALR
Sbjct:  238 ERLQIDIEDLNLSNVPLLAR--EKLPVVGIGKHLCGAATDLALR 279
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178090.4693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVJ5_ECTSI1.210e-1274.47tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectoc... [more]
A0A6H5KUX2_9PHAE2.250e-1270.83tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectoc... [more]
A0A821F753_9BILA6.780e-854.55tRNA:m(4)X modification enzyme TRM13 n=8 Tax=Rotar... [more]
A0A817CAC3_9BILA1.670e-754.55tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Rotar... [more]
A0A817KPL2_9BILA1.730e-754.55tRNA:m(4)X modification enzyme TRM13 n=12 Tax=Rota... [more]
A0A819LP60_9BILA1.740e-754.55tRNA:m(4)X modification enzyme TRM13 n=4 Tax=Rotar... [more]
A0A7S2RS80_9STRA2.910e-660.47tRNA:m(4)X modification enzyme TRM13 (Fragment) n=... [more]
A0A5J4NS90_9TREM3.400e-651.06tRNA:m(4)X modification enzyme TRM13 (Fragment) n=... [more]
B6S350_PHIRO3.990e-659.09tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Philo... [more]
UPI001402B1B55.450e-659.09tRNA:m(4)X modification enzyme TRM13 homolog n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig178090contigH-elongata_contig178090:542..691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue3.3e-10
Seed eggNOG ortholog2880.D7FVJ5
Preferred nameTRMT13
KEGG koko:K15446
GOsGO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0009451,GO:0009628,GO:0009651,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0071704,GO:0090304,GO:0106050,GO:0140098,GO:0140101,GO:1901360
EggNOG free text desc.tRNA methylation
EggNOG OGsKOG2811@1,KOG2811@2759
EC2.1.1.225
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930029.2907047-CDS-H-elongata_contig178090:541..6911622930029.2907047-CDS-H-elongata_contig178090:541..691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178090 542..691 -
1691679252.9318142-CDS-H-elongata_contig178090:541..6911691679252.9318142-CDS-H-elongata_contig178090:541..691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178090 542..691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig178090.4693.1prot_H-elongata_contig178090.4693.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig178090 542..691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig178090.4693.1

>prot_H-elongata_contig178090.4693.1 ID=prot_H-elongata_contig178090.4693.1|Name=mRNA_H-elongata_contig178090.4693.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
GHADRARIDIRDLNMAGLPSLRRGCEDRAVVVVAKHLCGAATDLALRQA*
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mRNA from alignment at H-elongata_contig178090:542..691-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig178090.4693.1 ID=mRNA_H-elongata_contig178090.4693.1|Name=mRNA_H-elongata_contig178090.4693.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig178090:542..691- (Himanthalia elongata Himel1 dioecious)
GGTCATGCCGACAGGGCGAGGATTGACATCCGAGATCTCAACATGGCGGG
CTTGCCGTCCCTGAGGCGGGGGTGCGAAGACAGGGCCGTCGTGGTCGTGG
CAAAGCACTTGTGCGGAGCGGCTACGGACTTAGCCCTAAGGCAAGCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig178090:542..691-

>mRNA_H-elongata_contig178090.4693.1 ID=mRNA_H-elongata_contig178090.4693.1|Name=mRNA_H-elongata_contig178090.4693.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig178090:542..691- (Himanthalia elongata Himel1 dioecious)
GGTCATGCCGACAGGGCGAGGATTGACATCCGAGATCTCAACATGGCGGG
CTTGCCGTCCCTGAGGCGGGGGTGCGAAGACAGGGCCGTCGTGGTCGTGG
CAAAGCACTTGTGCGGAGCGGCTACGGACTTAGCCCTAAGGCAAGCATGA
GGTCATGCCGACAGGGCGAGGATTGACATCCGAGATCTCAACATGGCGGG
CTTGCCGTCCCTGAGGCGGGGGTGCGAAGACAGGGCCGTCGTGGTCGTGG
CAAAGCACTTGTGCGGAGCGGCTACGGACTTAGCCCTAAGGCAAGCATGA
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