mRNA_H-elongata_contig177928.4687.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177928.4687.1
Unique NamemRNA_H-elongata_contig177928.4687.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig177928.4687.1 vs. uniprot
Match: A0A6H5JS11_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JS11_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 3.480e-57
Identity = 89/114 (78.07%), Postives = 100/114 (87.72%), Query Frame = 1 
Query:    1 CLCPRADFGGVEVGPKEDKLGIRASSTCPVTFSGCEVPADNVLGEVGRGYKYAIEILNEGRIGIGAQMLGLSRGCMDATLPYLFERKQFGQMVGDFQGMQHQIAQVSTDIEAAA 342
            C      FGGV VGPKE+KLGIRASSTCPVTFSGCEVPA NVLGEVG+GY+YAIEILNEGRIGIGAQM GL+ GC+ AT+PYLFERKQFG  VGDFQGMQHQ+AQ +T++EAA+
Sbjct:  209 CFIVEKGFGGVTVGPKEEKLGIRASSTCPVTFSGCEVPATNVLGEVGQGYRYAIEILNEGRIGIGAQMAGLAEGCLSATVPYLFERKQFGGFVGDFQGMQHQVAQAATEVEAAS 322
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BLAST of mRNA_H-elongata_contig177928.4687.1 vs. uniprot
Match: A0A812ZQI9_9DINO (ACADSB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZQI9_9DINO)

HSP 1 Score: 171 bits (432), Expect = 2.920e-50
Identity = 76/113 (67.26%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:    1 CLCPRADFGGVEVGPKEDKLGIRASSTCPVTFSGCEVPADNVLGEVGRGYKYAIEILNEGRIGIGAQMLGLSRGCMDATLPYLFERKQFGQMVGDFQGMQHQIAQVSTDIEAA 339
            C     DF G+EVG KEDKLGIRASSTCP+TF+  +VP +N++GE+G+GYK AIEILNEGRIGI +QMLG++ GCM+ATLPYL++RKQF   +GDFQGMQHQ+AQ++ +IEAA
Sbjct:  129 CFLAERDFEGLEVGKKEDKLGIRASSTCPITFTDMKVPKENIVGEIGKGYKIAIEILNEGRIGIASQMLGIAEGCMEATLPYLWQRKQFNNYIGDFQGMQHQVAQIAMEIEAA 241
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BLAST of mRNA_H-elongata_contig177928.4687.1 vs. uniprot
Match: A0A835ZGF4_9STRA (Acyl-CoA dehydrogenase/oxidase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGF4_9STRA)

HSP 1 Score: 171 bits (433), Expect = 7.700e-50
Identity = 80/105 (76.19%), Postives = 93/105 (88.57%), Query Frame = 1 
Query:   25 GGVEVGPKEDKLGIRASSTCPVTFSGCEVPADNVLGEVGRGYKYAIEILNEGRIGIGAQMLGLSRGCMDATLPYLFERKQFGQMVGDFQGMQHQIAQVSTDIEAA 339
            GG+ VG KEDKLGIRASSTCPVTF  C+VPA+NVLG+VG+GYKYAI+ILNEGRIGIGAQM+GLS GC +  +PYLFERKQFG  +GDFQ +QHQ AQ++TDIEAA
Sbjct:  191 GGISVGRKEDKLGIRASSTCPVTFHDCKVPAENVLGQVGQGYKYAIQILNEGRIGIGAQMVGLSLGCFEHVMPYLFERKQFGTHIGDFQAVQHQYAQMATDIEAA 295
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BLAST of mRNA_H-elongata_contig177928.4687.1 vs. uniprot
Match: A0A7S1G4M3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4M3_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.390e-47
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 1 
Query:    1 CLCPRADFGGVEVGPKEDKLGIRASSTCPVTFSGCEVPADNVLGEVGRGYKYAIEILNEGRIGIGAQMLGLSRGCMDATLPYLFERKQFGQMVGDFQGMQHQIAQVSTDIEAA 339
            C     +  GVE+G KEDKLGIRASSTCP++F+  EVP +NV+GE+G+GYK AIEILNEGRIGIGAQMLG+++G  DAT+PYL +RKQFG  +GDFQGMQHQ AQ + DIEAA
Sbjct:  232 CFLVDREMAGVEIGKKEDKLGIRASSTCPISFTDVEVPKENVVGEIGKGYKIAIEILNEGRIGIGAQMLGIAQGAFDATMPYLQQRKQFGTRIGDFQGMQHQYAQAAVDIEAA 344
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BLAST of mRNA_H-elongata_contig177928.4687.1 vs. uniprot
Match: A0A137P627_CONC2 (Acyl-CoA dehydrogenase NM domain-like protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P627_CONC2)

HSP 1 Score: 162 bits (411), Expect = 3.230e-46
Identity = 77/104 (74.04%), Postives = 89/104 (85.58%), Query Frame = 1 
Query:   28 GVEVGPKEDKLGIRASSTCPVTFSGCEVPADNVLGEVGRGYKYAIEILNEGRIGIGAQMLGLSRGCMDATLPYLFERKQFGQMVGDFQGMQHQIAQVSTDIEAA 339
            G++VG KEDKLGIRASSTC +TF    VPA N+LGE G+GYKYAIEILNEGRIGI AQMLGL++G  D TLPYLFERKQFG+ +G+FQGMQHQ AQ +T+IEAA
Sbjct:  227 GIQVGKKEDKLGIRASSTCSLTFEDVRVPASNILGEYGKGYKYAIEILNEGRIGIAAQMLGLAQGVFDQTLPYLFERKQFGEAIGNFQGMQHQYAQAATEIEAA 330
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BLAST of mRNA_H-elongata_contig177928.4687.1 vs. uniprot
Match: A0A812JD34_9DINO (Acadsb protein n=3 Tax=Sar TaxID=2698737 RepID=A0A812JD34_9DINO)

HSP 1 Score: 162 bits (409), Expect = 6.920e-46
Identity = 78/113 (69.03%), Postives = 89/113 (78.76%), Query Frame = 1 
Query:    1 CLCPRADFGGVEVGPKEDKLGIRASSTCPVTFSGCEVPADNVLGEVGRGYKYAIEILNEGRIGIGAQMLGLSRGCMDATLPYLFERKQFGQMVGDFQGMQHQIAQVSTDIEAA 339
            C     D  G  VG KEDKLGIRASSTCP+T  G +VP + V+GEVG+GYK AIEILNEGRIGI +QMLG+++G  DATLPYLFERKQFG  +GDFQGMQHQ AQV  +IEAA
Sbjct:  223 CFLVERDQEGFSVGKKEDKLGIRASSTCPLTLEGVKVPKNRVVGEVGKGYKIAIEILNEGRIGIASQMLGIAQGAFDATLPYLFERKQFGSAIGDFQGMQHQYAQVGMEIEAA 335
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BLAST of mRNA_H-elongata_contig177928.4687.1 vs. uniprot
Match: A0A7S3LNX8_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3LNX8_9STRA)

HSP 1 Score: 161 bits (408), Expect = 7.620e-46
Identity = 75/113 (66.37%), Postives = 92/113 (81.42%), Query Frame = 1 
Query:    1 CLCPRADFGGVEVGPKEDKLGIRASSTCPVTFSGCEVPADNVLGEVGRGYKYAIEILNEGRIGIGAQMLGLSRGCMDATLPYLFERKQFGQMVGDFQGMQHQIAQVSTDIEAA 339
            C      F G+EVG +EDKLGIRASSTCP+TF+   +P +NVLGE+G+GYKYAIEILNEGRIGIGAQM+GL++G  D T+PYL ERKQFGQ +G+FQ MQHQ A+ + +IEAA
Sbjct:  213 CFVAEKGFEGLEVGNREDKLGIRASSTCPITFTDVVIPKNNVLGEIGKGYKYAIEILNEGRIGIGAQMVGLAQGTFDLTMPYLQERKQFGQPIGNFQAMQHQYAEAAVEIEAA 325
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BLAST of mRNA_H-elongata_contig177928.4687.1 vs. uniprot
Match: A0A7S0NQ50_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NQ50_9EUKA)

HSP 1 Score: 161 bits (407), Expect = 2.100e-45
Identity = 76/113 (67.26%), Postives = 92/113 (81.42%), Query Frame = 1 
Query:    1 CLCPRADFGGVEVGPKEDKLGIRASSTCPVTFSGCEVPADNVLGEVGRGYKYAIEILNEGRIGIGAQMLGLSRGCMDATLPYLFERKQFGQMVGDFQGMQHQIAQVSTDIEAA 339
            C     D  G+ VG KEDKLGIRASSTC VTF G  VP + +LGE+G+GYKYAIEILNEGRIGIGAQM+GL++G +D TLPYL ER+QFGQ V DFQG+QHQ+AQ++T++ AA
Sbjct:  246 CFVVPRDAPGLSVGMKEDKLGIRASSTCTVTFDGVRVPEEAILGELGKGYKYAIEILNEGRIGIGAQMVGLAQGALDLTLPYLHERRQFGQRVADFQGVQHQVAQMATELHAA 358
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BLAST of mRNA_H-elongata_contig177928.4687.1 vs. uniprot
Match: A0A2R5G2F8_9STRA (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial n=2 Tax=Thraustochytriaceae TaxID=33674 RepID=A0A2R5G2F8_9STRA)

HSP 1 Score: 160 bits (405), Expect = 2.170e-45
Identity = 76/113 (67.26%), Postives = 89/113 (78.76%), Query Frame = 1 
Query:    1 CLCPRADFGGVEVGPKEDKLGIRASSTCPVTFSGCEVPADNVLGEVGRGYKYAIEILNEGRIGIGAQMLGLSRGCMDATLPYLFERKQFGQMVGDFQGMQHQIAQVSTDIEAA 339
            C        G EVG KE+KLGIRASSTCP+TF+   VP +NVLGE+G+GYKYAIEILNEGRIGI AQ LG+++G  DATLPYL ERKQFG  +GDFQ MQHQ+AQ + +IEAA
Sbjct:  212 CFIMERGMEGFEVGKKENKLGIRASSTCPLTFTDVVVPKENVLGEIGKGYKYAIEILNEGRIGIAAQCLGMAQGAFDATLPYLHERKQFGSFIGDFQAMQHQVAQCAVEIEAA 324
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BLAST of mRNA_H-elongata_contig177928.4687.1 vs. uniprot
Match: A0A482RE16_9ARCH (Acyl-CoA_dh_1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RE16_9ARCH)

HSP 1 Score: 155 bits (391), Expect = 2.360e-45
Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:   46 KEDKLGIRASSTCPVTFSGCEVPADNVLGEVGRGYKYAIEILNEGRIGIGAQMLGLSRGCMDATLPYLFERKQFGQMVGDFQGMQHQIAQVSTDIEAA 339
            KEDKLGIRASSTCPVTF   +VPA NV+GEVG+GYK AIEILNEGRIGI AQMLG++ G  DA +PYLFERKQFG  +G+FQGMQHQ AQ + DIEAA
Sbjct:   35 KEDKLGIRASSTCPVTFEDLKVPASNVIGEVGKGYKIAIEILNEGRIGIAAQMLGIAEGAYDAAMPYLFERKQFGSHIGEFQGMQHQYAQAAVDIEAA 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177928.4687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JS11_9PHAE3.480e-5778.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A812ZQI9_9DINO2.920e-5067.26ACADSB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A835ZGF4_9STRA7.700e-5076.19Acyl-CoA dehydrogenase/oxidase (Fragment) n=1 Tax=... [more]
A0A7S1G4M3_9STRA1.390e-4768.14Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A137P627_CONC23.230e-4674.04Acyl-CoA dehydrogenase NM domain-like protein n=1 ... [more]
A0A812JD34_9DINO6.920e-4669.03Acadsb protein n=3 Tax=Sar TaxID=2698737 RepID=A0A... [more]
A0A7S3LNX8_9STRA7.620e-4666.37Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S0NQ50_9EUKA2.100e-4567.26Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A2R5G2F8_9STRA2.170e-4567.26Short/branched chain specific acyl-CoA dehydrogena... [more]
A0A482RE16_9ARCH2.360e-4575.51Acyl-CoA_dh_1 domain-containing protein n=1 Tax=ar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177928contigH-elongata_contig177928:251..1193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.9
Seed ortholog evalue2.1e-47
Seed eggNOG ortholog2880.D7FWS9
Preferred nameACADSB
KEGG rclassRC00052,RC00068,RC00076,RC00148
KEGG koko:K09478,ko:K18402
KEGG ReactionR01175,R02661,R03172,R04751
KEGG Pathwayko00071,ko00280,ko01100,ko01110,ko01212,map00071,map00280,map01100,map01110,map01212
GOsGO:0002376,GO:0003674,GO:0003824,GO:0003995,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006139,GO:0006163,GO:0006520,GO:0006629,GO:0006631,GO:0006635,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009062,GO:0009063,GO:0009081,GO:0009083,GO:0009117,GO:0009150,GO:0009259,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0016627,GO:0016937,GO:0019395,GO:0019637,GO:0019693,GO:0019752,GO:0022900,GO:0030258,GO:0031974,GO:0032787,GO:0033865,GO:0033875,GO:0034032,GO:0034440,GO:0034641,GO:0035383,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046395,GO:0046483,GO:0050829,GO:0050896,GO:0051186,GO:0051704,GO:0051707,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:0072521,GO:0098542,GO:1901135,GO:1901360,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
EggNOG OGsCOG1960@1,KOG0139@2759
Ec32 ortholog descriptionacyl-CoA dehydrogenase
Ec32 orthologEc-16_004260.1
EC1.3.99.12
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930028.596622-CDS-H-elongata_contig177928:250..4601622930028.596622-CDS-H-elongata_contig177928:250..460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177928 251..460 -
1691679252.6429563-CDS-H-elongata_contig177928:250..4601691679252.6429563-CDS-H-elongata_contig177928:250..460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177928 251..460 -
1622930028.6165912-CDS-H-elongata_contig177928:1058..11931622930028.6165912-CDS-H-elongata_contig177928:1058..1193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177928 1059..1193 -
1691679252.65578-CDS-H-elongata_contig177928:1058..11931691679252.65578-CDS-H-elongata_contig177928:1058..1193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177928 1059..1193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177928.4687.1prot_H-elongata_contig177928.4687.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177928 251..1193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177928.4687.1

>prot_H-elongata_contig177928.4687.1 ID=prot_H-elongata_contig177928.4687.1|Name=mRNA_H-elongata_contig177928.4687.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
CLCPRADFGGVEVGPKEDKLGIRASSTCPVTFSGCEVPADNVLGEVGRGY
KYAIEILNEGRIGIGAQMLGLSRGCMDATLPYLFERKQFGQMVGDFQGMQ
HQIAQVSTDIEAAA*
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mRNA from alignment at H-elongata_contig177928:251..1193-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177928.4687.1 ID=mRNA_H-elongata_contig177928.4687.1|Name=mRNA_H-elongata_contig177928.4687.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=943bp|location=Sequence derived from alignment at H-elongata_contig177928:251..1193- (Himanthalia elongata Himel1 dioecious)
TGTTTGTGTCCCCGCGCAGATTTTGGGGGAGTGGAAGTGGGCCCCAAGGA
GGACAAGCTCGGTATTCGCGCGTCATCCACGTGTCCCGTTACCTTCAGCG
GGTGCGAGGTTCCCGCCGACAACGTACTCGGTGAAGTGCGTCCAGTCCCG
TTCTTGGGCCTCGCAATATCGCGCTATAACTACTATATCTACTACTACTA
ATACTACTACTATTATGAAGGTGTCGCACGTGTCGCAATATACTGTACCG
GTATTGCAGGTGTCGCAATATACTGTACCGGTATTGTAGGTGTCGCAATA
TACTGTACCGGTATTGTAGGTGTCGCAATATACTGTACCGGTATTGTAGG
TGTTACAATATACTGTACCGGTATTGTAGGTGTCGCAATATACTGTATCG
GTATGGTGAGGAAGCTTAGCACGAAGTATATTGCAAGGTGTTGTCAGAGA
TGGCGAGGTTTGTAATATATTGCAATGTGTTGTAGTTGCTTGTTATGTAT
TGATTATAATATATTGTAACGTAGGTGTTCCCGACGGAGGCAAGCACCCC
GAGCGCGATGAAGAATGGAGTCGTTCACTTTCCCCAATGCTATCTCTTGT
ATTTGATATCTCTCCCTTGAAACGTGTTCAACCGCCCATAGGCAGCTCTT
GATACGAGATAATATCTCGTCGTTTGTGATCGATGTTACTTCCTCCCCTC
CCCTCCCTTCCCTTCCCGATGCCGCCTTCGAAGGTGGGACGAGGATACAA
GTACGCAATCGAGATCTTAAACGAGGGTCGGATAGGCATCGGAGCGCAGA
TGCTGGGACTCTCCCGGGGCTGCATGGATGCCACACTGCCGTACCTGTTC
GAGCGCAAGCAGTTCGGCCAGATGGTGGGTGACTTCCAGGGCATGCAGCA
TCAAATCGCCCAGGTTTCCACCGACATCGAGGCTGCCGCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig177928:251..1193-

>mRNA_H-elongata_contig177928.4687.1 ID=mRNA_H-elongata_contig177928.4687.1|Name=mRNA_H-elongata_contig177928.4687.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig177928:251..1193- (Himanthalia elongata Himel1 dioecious)
TGTTTGTGTCCCCGCGCAGATTTTGGGGGAGTGGAAGTGGGCCCCAAGGA
GGACAAGCTCGGTATTCGCGCGTCATCCACGTGTCCCGTTACCTTCAGCG
GGTGCGAGGTTCCCGCCGACAACGTACTCGGTGAATGTTTGTGTCCCCGC
GCAGATTTTGGGGGAGTGGAAGTGGGCCCCAAGGAGGACAAGCTCGGTAT
TCGCGCGTCATCCACGTGTCCCGTTACCTTCAGCGGGTGCGAGGTTCCCG
CCGACAACGTACTCGGTGAAGTGGGACGAGGATACAAGTACGCAATCGAG
ATCTTAAACGAGGGTCGGATAGGCATCGGAGCGCAGATGCTGGGACTCTC
CCGGGGCTGCATGGATGCCACACTGCCGTACCTGTTCGAGCGCAAGCAGT
TCGGCCAGATGGTGGGTGACTTCCAGGGCATGCAGCATCAAATCGCCCAG
GTTTCCACCGACATCGAGGCTGCCGCGTAAGTGGGACGAGGATACAAGTA
CGCAATCGAGATCTTAAACGAGGGTCGGATAGGCATCGGAGCGCAGATGC
TGGGACTCTCCCGGGGCTGCATGGATGCCACACTGCCGTACCTGTTCGAG
CGCAAGCAGTTCGGCCAGATGGTGGGTGACTTCCAGGGCATGCAGCATCA
AATCGCCCAGGTTTCCACCGACATCGAGGCTGCCGCGTAA
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