mRNA_H-elongata_contig177925.4686.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: D7FX19_ECTSI (Er lumen protein retaining receptor 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX19_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 7.600e-23 Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 1
Query: 1 VTHSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYYAI 177
VTHSTFALGLARVLDMVFWMFSY+ELT GS SVG+ VL SQFVH+VIM DFFYYYAI
Sbjct: 217 VTHSTFALGLARVLDMVFWMFSYKELT-HAGSNSVGMFVLFSQFVHVVIMGDFFYYYAI 274
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: A0A836CR66_9STRA (Er lumen protein retaining receptor 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR66_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 3.590e-19 Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 1
Query: 1 VTHSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYYAI 177
V+HS FALG ARVLDM+FW++SY EL+ GS+SVG++VL +QF+HI IM DFFYYY I
Sbjct: 220 VSHSVFALGFARVLDMIFWLYSYHELSDAAGSKSVGMLVLATQFIHIAIMGDFFYYYLI 278
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: A0A835ZJ22_9STRA (Er lumen protein retaining receptor 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ22_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 3.590e-19 Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 1
Query: 1 VTHSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYYAI 177
V+HS FALG ARVLDMVFW++SY EL+ GS+SVG++VL +QF+HI IM DFFYYY I
Sbjct: 220 VSHSVFALGFARVLDMVFWLYSYHELSDAAGSKSVGMLVLATQFIHIAIMGDFFYYYFI 278
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: A0A7S2GHT0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GHT0_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 3.780e-14 Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1
Query: 1 VTHSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYY 171
V+HS FALG ARV++ FWM S+ EL + GS+ VG +VLLSQF+H+ +M DFFY+Y
Sbjct: 213 VSHSVFALGFARVVESAFWMSSFHELHSGAGSQFVGWVVLLSQFIHVALMGDFFYFY 269
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: A0A6V2QBA8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2QBA8_HETAK) HSP 1 Score: 71.2 bits (173), Expect = 2.680e-13 Identity = 29/57 (50.88%), Postives = 44/57 (77.19%), Query Frame = 1
Query: 1 VTHSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYY 171
++HS FALG ARVLD+VFW+ +Y EL +G + G+++L +QF+++ +M DFFYYY
Sbjct: 209 ISHSVFALGFARVLDLVFWLSTYSELAGKGSTNFSGMLILFTQFINVALMGDFFYYY 265
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: A0A482SL71_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL71_9ARCH) HSP 1 Score: 67.4 bits (163), Expect = 3.970e-13 Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 1
Query: 1 VTHSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYY 171
+ H+ FA+G +R+ +++FW+ S+REL GSR G IVL+SQ H++IMADFFY+Y
Sbjct: 32 IGHTMFAVGASRLFELIFWLGSFRELADHTGSRMPGYIVLVSQIAHLLIMADFFYFY 88
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: A0A7S3ZIY5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZIY5_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.050e-12 Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 1
Query: 1 VTHSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYY 171
V H ALGL+RV++M FWM S+ EL + G+R VG++VL++Q VH+VIM DFFY+Y
Sbjct: 215 VGHFVAALGLSRVVEMGFWMNSFHELADRNGNRHVGVLVLVAQMVHLVIMGDFFYFY 271
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: A0A7R9U936_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U936_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 3.700e-12 Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1
Query: 7 HSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYY 171
H ALGLAR+++M+FW S+REL+ S VGI VL++Q VHI+IM DFFYYY
Sbjct: 210 HFVSALGLARIIEMIFWSSSFRELSHSSNSTWVGIFVLVAQIVHILIMLDFFYYY 264
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: A0A7S2H0H3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H0H3_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 5.070e-11 Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 7 HSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYY 171
H ALG RVL+ FW++SY EL + GS+ G + +LSQFV +V+M DFFYYY
Sbjct: 290 HFVAALGFGRVLEFAFWIYSYHELASSNGSKLPGYLAILSQFVQLVLMLDFFYYY 344
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: A0A7S2SFV5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SFV5_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 1.310e-10 Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 7 HSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYY 171
H ALG R++++ FW +S+ EL T GGS GI+ LLSQF+ +++M DFF+YY
Sbjct: 288 HFVAALGFGRIMELCFWSYSFHELVTAGGSTLPGIVALLSQFMQLILMLDFFWYY 342 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig177925.4686.1 >prot_H-elongata_contig177925.4686.1 ID=prot_H-elongata_contig177925.4686.1|Name=mRNA_H-elongata_contig177925.4686.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp VTHSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMback to top mRNA from alignment at H-elongata_contig177925:975..1151- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig177925.4686.1 ID=mRNA_H-elongata_contig177925.4686.1|Name=mRNA_H-elongata_contig177925.4686.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig177925:975..1151- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig177925:975..1151- >mRNA_H-elongata_contig177925.4686.1 ID=mRNA_H-elongata_contig177925.4686.1|Name=mRNA_H-elongata_contig177925.4686.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig177925:975..1151- (Himanthalia elongata Himel1 dioecious)back to top |