mRNA_H-elongata_contig17776.4681.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17776.4681.1
Unique NamemRNA_H-elongata_contig17776.4681.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17776.4681.1 vs. uniprot
Match: D8LM35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM35_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 6.940e-8
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   34 MLKASAKWGSGGVGKEQIPVPVCKVKYQPFR 126
            ML+ASA+WGSG  GKEQI VPVCKVKYQPFR
Sbjct:    1 MLEASARWGSGARGKEQISVPVCKVKYQPFR 31
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BLAST of mRNA_H-elongata_contig17776.4681.1 vs. uniprot
Match: A0A6S8FEU9_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8FEU9_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.330e-6
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 3 
Query:  165 WQREIRKMRREKMYACHLHHAKRKSLFERFGPREGWEPFDQW 290
            W++ + K   E+ Y C  HH KRK+  +RFG R+GWEPFDQW
Sbjct:   22 WRKVLGKY--ERNYGCFRHHEKRKAKIDRFGLRQGWEPFDQW 61
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17776.4681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM35_ECTSI6.940e-883.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6S8FEU9_9STRA1.330e-652.38Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17776contigH-elongata_contig17776:5295..5699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size317
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930028.0778203-CDS-H-elongata_contig17776:5296..54241622930028.0778203-CDS-H-elongata_contig17776:5296..5424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17776 5297..5424 -
1691679252.3967507-CDS-H-elongata_contig17776:5296..54241691679252.3967507-CDS-H-elongata_contig17776:5296..5424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17776 5297..5424 -
1622930028.0939975-CDS-H-elongata_contig17776:5512..56991622930028.0939975-CDS-H-elongata_contig17776:5512..5699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17776 5513..5699 -
1691679252.4131052-CDS-H-elongata_contig17776:5512..56991691679252.4131052-CDS-H-elongata_contig17776:5512..5699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17776 5513..5699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17776.4681.1prot_H-elongata_contig17776.4681.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17776 5297..5699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17776.4681.1

>prot_H-elongata_contig17776.4681.1 ID=prot_H-elongata_contig17776.4681.1|Name=mRNA_H-elongata_contig17776.4681.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
SSASSGPQASAMLKASAKWGSGGVGKEQIPVPVCKVKYQPFRWLPPGRRD
DMDGAGSGKYEKCGGKKCTRVTSTTRKENPCSNDLARAKVGNRSTSGMTP
AARAR
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mRNA from alignment at H-elongata_contig17776:5295..5699-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17776.4681.1 ID=mRNA_H-elongata_contig17776.4681.1|Name=mRNA_H-elongata_contig17776.4681.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=405bp|location=Sequence derived from alignment at H-elongata_contig17776:5295..5699- (Himanthalia elongata Himel1 dioecious)
AGCTCGGCTTCCTCTGGCCCTCAAGCATCGGCAATGCTCAAGGCCTCCGC
GAAATGGGGCAGTGGTGGGGTGGGCAAGGAGCAAATCCCTGTCCCCGTCT
GCAAGGTAAAGTACCAGCCGTTCCGGTGGTTGCCGCCGGGGAGGCGCGAC
GACATGGACGGCGCTGGCAGCGGGAAATACGAAAAATGTAATGGTAGCCT
TGACAAAAAATATGCTGGTGGCCGTGTTTATCGCGAAGACGGCAATCGTG
CAAACGGTGGTGGGGCGCAACGGAGGCGGCGGGAAAAAATGTACGCGTGT
CACCTCCACCACGCGAAAAGAAAATCCCTGTTCGAACGATTTGGCCCGCG
CGAAGGTTGGGAACCGTTCGACCAGTGGCATGACGCCCGCGGCGCGAGCT
CGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig17776:5295..5699-

>mRNA_H-elongata_contig17776.4681.1 ID=mRNA_H-elongata_contig17776.4681.1|Name=mRNA_H-elongata_contig17776.4681.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig17776:5295..5699- (Himanthalia elongata Himel1 dioecious)
AGCTCGGCTTCCTCTGGCCCTCAAGCATCGGCAATGCTCAAGGCCTCCGC
GAAATGGGGCAGTGGTGGGGTGGGCAAGGAGCAAATCCCTGTCCCCGTCT
GCAAGGTAAAGTACCAGCCGTTCCGGTGGTTGCCGCCGGGGAGGCGCGAC
GACATGGACGGCGCTGGCAGCGGGAAATACGAAAAATAGCTCGGCTTCCT
CTGGCCCTCAAGCATCGGCAATGCTCAAGGCCTCCGCGAAATGGGGCAGT
GGTGGGGTGGGCAAGGAGCAAATCCCTGTCCCCGTCTGCAAGGTAAAGTA
CCAGCCGTTCCGGTGGTTGCCGCCGGGGAGGCGCGACGACATGGACGGCG
CTGGCAGCGGGAAATACGAAAAATGCGGCGGGAAAAAATGTACGCGTGTC
ACCTCCACCACGCGAAAAGAAAATCCCTGTTCGAACGATTTGGCCCGCGC
GAAGGTTGGGAACCGTTCGACCAGTGGCATGACGCCCGCGGCGCGAGCTC
GGGCGGCGGGAAAAAATGTACGCGTGTCACCTCCACCACGCGAAAAGAAA
ATCCCTGTTCGAACGATTTGGCCCGCGCGAAGGTTGGGAACCGTTCGACC
AGTGGCATGACGCCCGCGGCGCGAGCTCGG
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