mRNA_H-elongata_contig17764.4674.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17764.4674.1 vs. uniprot
Match: A0A6H5JN73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN73_9PHAE) HSP 1 Score: 352 bits (902), Expect = 6.980e-106 Identity = 174/258 (67.44%), Postives = 211/258 (81.78%), Query Frame = 1
Query: 1 QVYRSPVVMNNLNPLWDTVEVPVQVLCNGDYGRSLRVEVWDWDKDGDHDFMGLVNTNLQELLEGQGREMKMEHRKKGKKCKGSLRVERANLFQEPTLLQYIAGGLQINLMVAIDFTGSNGHPMHPDSLHHVDPSGELNQYQRAIVSIGTILQDYDSDKMFPVYGFGGRLKGAPVSHCFLIYDRRVRGMYNADGEAYGVNGVLEAYSASLANVTLAGPTFFSEVLQTAMARASQPVDQADQRYNVLLILTDGIINDMQQ 774
QV++S V+MN+L+P W ++ VQ LCNGDY R L++EVWDWD+DGDHD MG + T+LQ LLEGQGREM +EH KK KK KG L+V+ A + ++PTLL+Y+AGGLQI++ AIDFTGSNG P HP SLH++DPSG LNQYQ+AI SIG ILQDYDSDKMFPVYGFGGR+ G PVSHCF I RV ++ EAYGV G+LEAYSA++ +V LAGPT F+EVL+TAMARA++P QADQRY+VLLILTDGIINDMQQ
Sbjct: 174 QVHKSEVIMNDLSPAWQPQDMSVQALCNGDYLRPLQLEVWDWDRDGDHDCMGRLKTSLQGLLEGQGREMDLEHPKKDKKGKGQLKVDHAEVHRQPTLLEYLAGGLQISMTCAIDFTGSNGSPSHPQSLHYLDPSGRLNQYQQAIWSIGHILQDYDSDKMFPVYGFGGRINGQPVSHCFPIC--RVSHAGGSE-EAYGVQGILEAYSAAMTSVQLAGPTLFTEVLETAMARANRPSTQADQRYDVLLILTDGIINDMQQ 428
BLAST of mRNA_H-elongata_contig17764.4674.1 vs. uniprot
Match: D2VCR4_NAEGR (Uncharacterized protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VCR4_NAEGR) HSP 1 Score: 234 bits (598), Expect = 1.680e-61 Identity = 118/271 (43.54%), Postives = 177/271 (65.31%), Query Frame = 1
Query: 4 VYRSPVVMNNLNPLWDTVEVPVQVLCNGDYGRSLRVEVWDWDKDGDHDFMGLVNTNLQELLEGQGREMKMEHRKKGKKCKGSLRVERANLFQEPTLLQYIAGGLQINLMVAIDFTGSNGHPMHPDSLHHVDPSGELNQYQRAIVSIGTILQDYDSDKMFPVYGFGGRLKGAPVSHCFLIYDRRVRGMYNADGEAYGVNGVLEAYSASLANVTLAGPTFFSEVLQTAMARASQPVDQADQRYNVLLILTDGIINDMQQARRQTRPQPSMPTS 816
VY+S +MNNLNP+W + + LCNGDY RSL++ V+DW+K DF+G V TNL LL+ +K+++ K K G L V+ + + + PT L+++AGG+++N++VA+DFT SNG P P SLH+ + G++NQY++AI S+G I+ DYDSDK+FP +G+GG L SHCF + + E + V+G+L++Y +L V L+GPT F+++++TA AS P+ Q++Q Y VLLI TDG+INDMQ+ Q +P S
Sbjct: 194 VYQSETIMNNLNPIWKPMRISCAKLCNGDYHRSLKISVYDWNKHSAPDFIGEVETNLDALLKASV-SLKLQNPAKKKGNHGDLIVKSSKITKNPTFLEFLAGGMKMNMLVAVDFTASNGQPELPQSLHY-NRQGQMNQYEQAIRSVGQIISDYDSDKLFPSFGYGGYLPNGITSHCFALNGNPQK------PECFQVDGILQSYRQALYTVKLSGPTHFAQIIKTACQYASVPISQSNQEYFVLLICTDGMINDMQETIDQIIEGSGLPLS 456
BLAST of mRNA_H-elongata_contig17764.4674.1 vs. uniprot
Match: A0A6A5BSJ5_NAEFO (Uncharacterized protein n=2 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BSJ5_NAEFO) HSP 1 Score: 230 bits (587), Expect = 4.010e-61 Identity = 119/256 (46.48%), Postives = 170/256 (66.41%), Query Frame = 1
Query: 4 VYRSPVVMNNLNPLWDTVEVPVQVLCNGDYGRSLRVEVWDWDKDGDHDFMGLVNTNLQELLEGQ-GREMKMEHRKKGKKCKGSLRVERANLFQEPTLLQYIAGGLQINLMVAIDFTGSNGHPMHPDSLHHVDPSGELNQYQRAIVSIGTILQDYDSDKMFPVYGFGGRLKGAPVSHCFLIYDRRVRGMYNADGEAYGVNGVLEAYSASLANVTLAGPTFFSEVLQTAMARASQPVDQADQRYNVLLILTDGIINDM 768
V++S +MN LNPLW +P+ LCNGD R L++ V+D+DK DF+G TNL +++G ++ +++KKGK+ G L V+ A L + + L++IAGGL++NL+VAIDFT SNG+ P+SLH+ P G++NQY+ AI ++G IL DYD DK FP +G+GG + G SHCF + + E GV G+L+AY +L NV+L+GPT F+ V+QTA ASQP+ Q +Q Y +LLI+TDG INDM
Sbjct: 208 VFQSETIMNTLNPLWKPFRIPLAKLCNGDVMRPLKISVYDYDKFSQPDFIGDCETNLDSIMKGTLSLKLVNKNKKKGKEHTGDLVVKSAKLVRNYSFLEFIAGGLKMNLLVAIDFTASNGNVTDPNSLHYNKP-GQMNQYESAIYAVGQILSDYDYDKRFPCFGYGGYINGT-TSHCFALNGNPQQ------PECLGVPGILQAYRQALNNVSLSGPTLFANVIQTACRYASQPISQQNQEYYILLIITDGAINDM 455
BLAST of mRNA_H-elongata_contig17764.4674.1 vs. uniprot
Match: UPI001CFD7738 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFD7738) HSP 1 Score: 226 bits (577), Expect = 8.290e-60 Identity = 116/256 (45.31%), Postives = 169/256 (66.02%), Query Frame = 1
Query: 4 VYRSPVVMNNLNPLWDTVEVPVQVLCNGDYGRSLRVEVWDWDKDGDHDFMGLVNTNLQELLEGQ-GREMKMEHRKKGKKCKGSLRVERANLFQEPTLLQYIAGGLQINLMVAIDFTGSNGHPMHPDSLHHVDPSGELNQYQRAIVSIGTILQDYDSDKMFPVYGFGGRLKGAPVSHCFLIYDRRVRGMYNADGEAYGVNGVLEAYSASLANVTLAGPTFFSEVLQTAMARASQPVDQADQRYNVLLILTDGIINDM 768
V++S +MN LNP+W +P+ LCNGD R L++ V+D+DK DF+G TNL +++G ++ +++KKGK+ G L + A L + + L +I+GGL++NL+VAIDFT SNG+ P SLH+ P G++NQY+ AI ++G IL DYD DK FP +G+GG + G+ SHCF + + E YGV G+L+AY +L NV+L+GPT F+ V++TA ASQP+ Q +Q Y +LLI+TDG INDM
Sbjct: 206 VFQSETIMNTLNPVWKPFRMPLTKLCNGDVMRPLKISVYDYDKFSQPDFIGECETNLDSIMKGTLSLKLINKNKKKGKEHTGDLVAKSAKLVKNYSFLDFISGGLRMNLLVAIDFTASNGNVTDPHSLHYNKP-GQMNQYESAIYAVGQILSDYDYDKKFPCFGYGGYINGS-TSHCFALNGNPQQ------PECYGVEGILQAYRQALNNVSLSGPTLFANVIKTACQIASQPISQQNQEYYILLIITDGAINDM 453
BLAST of mRNA_H-elongata_contig17764.4674.1 vs. uniprot
Match: A0A7S3LM26_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LM26_9STRA) HSP 1 Score: 219 bits (559), Expect = 2.140e-59 Identity = 127/287 (44.25%), Postives = 173/287 (60.28%), Query Frame = 1
Query: 1 QVYRSPVVMNNLNPLWDTVEVPVQVLCNGDYGRSLRVEVWDWDKDGDHDFMGLVNTNLQELLEGQGREMKMEH--RKKGKKCKGS--LRVERANLFQEPTLLQYIAGGLQINLMVAIDFTGSNGHPMHPDSLHHVDPS----------GELNQYQRAIVSIGTILQDYDSDKMFPVYGFGGRLKGAPVSHCF-LIYDRRVRGMYNADGEAYGVNGVLEAYSASLANVTLAGPTFFSEVLQTAMARASQPVDQADQRYNVLLILTDGIINDMQQARRQTRPQPSMPTS 816
+V+ S VM +++P W V +PVQ LCNGDY R +R+ V+D++ GDH +G T+L+ L + + E +KKG K KGS V ++ + + + L+Y+ GG ++NL+VAIDFT SNG P P SLH+ P+ LN+YQ+AIVSIG ILQDYDSD++FP+YGFGG + G SHCF L +D + E GV G+LEAY + V+L+GPT FS++L A ASQ Q Q Y +LLILTDG+INDM Q Q +P S
Sbjct: 17 KVWDSEPVMKDISPTWKEVTIPVQKLCNGDYDRPIRITVYDYESSGDHQLIGGFQTSLRALQPNKQFTVVNEKLKQKKGDKYKGSGTFNVVKSVVEKRYSFLEYVRGGCELNLVVAIDFTASNGAPSTPQSLHYQPPTMNFDGSLRIVSHLNEYQQAIVSIGQILQDYDSDQLFPLYGFGGAVNGQ-TSHCFPLTFDP-------GNPEVTGVQGILEAYKNAFNFVSLSGPTLFSQILAMANRYASQHPSQTSQNYTILLILTDGVINDMDQTIEQIIEGSGLPLS 295
BLAST of mRNA_H-elongata_contig17764.4674.1 vs. uniprot
Match: UPI000D731889 (copine-8-like n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D731889) HSP 1 Score: 220 bits (560), Expect = 4.080e-58 Identity = 124/279 (44.44%), Postives = 163/279 (58.42%), Query Frame = 1
Query: 4 VYRSPVVMNNLNPLWDTVEVPVQVLCNGDYGRSLRVEVWDWDKDGDHDFMGLVNTNLQELLEGQGR-------EMKMEHRKKGKKCKGSLRVERANLFQEPTLLQYIAGGLQINLMVAIDFTGSNGHPMHPDSLHHVDPSGELNQYQRAIVSIGTILQDYDSDKMFPVYGFGGRLKGAPVSHCFLIYDRRVRGMYNADGEAY-GVNGVLEAYSASLANVTLAGPTFFSEVLQTAMARASQPVDQADQRYNVLLILTDGIINDMQQARRQTRPQPSMPTS 816
V ++ V+ NNLNP W V + VQ LCNGDY RS+++E +DWD DG HDF+G +T L EL G K + +KK K G ++V R + Q + L YI GGLQ+ MVAIDFT SNG+P HP SLH++ P + NQY AI +IG I+QDY+S KMFPV GFG +L VSH F + +N GV+G+L+AY A+L+ + L PT FS V+ AS+ D + Y LLI+TDG I DMQQ + S+P S
Sbjct: 184 VQKTEVIKNNLNPTWRPVTISVQTLCNGDYNRSIQIECYDWDSDGSHDFIGAFSTTLNELSRGAVEANIFPVINPKKQAKKKNYKDSGQIQVLRCTIQQHQSFLDYIKGGLQMQFMVAIDFTASNGNPTHPSSLHYIHPQ-QPNQYVAAIKAIGEIIQDYNSKKMFPVLGFGAKLPDGQVSHDFAVN-------FNPQNPCVQGVDGILQAYQAALSRIQLHSPTNFSPVINLLSRYASEARDGST--YFTLLIITDGEITDMQQTKNAIVMASSLPMS 452
BLAST of mRNA_H-elongata_contig17764.4674.1 vs. uniprot
Match: A0A7J7WC51_PIPKU (Copine family member 9 n=1 Tax=Pipistrellus kuhlii TaxID=59472 RepID=A0A7J7WC51_PIPKU) HSP 1 Score: 213 bits (543), Expect = 5.540e-58 Identity = 117/278 (42.09%), Postives = 170/278 (61.15%), Query Frame = 1
Query: 7 YRSPVVMNNLNPLWDTVEVPVQVLCNGDYGRSLRVEVWDWDKDGDHDFMGLVNTNLQELLEGQGREMKMEHRKKGKKCK-------GSLRVERANLFQEPTLLQYIAGGLQINLMVAIDFTGSNGHPMHPDSLHHVDPSGELNQYQRAIVSIGTILQDYDSDKMFPVYGFGGRLKG-APVSHCFLIYDRRVRGMYNADGEAYGVNGVLEAYSASLANVTLAGPTFFSEVLQTAMARASQPVDQADQRYNVLLILTDGIINDMQQARRQTRPQPSMPTS 816
+++ VV N LNP+W +PV+ LCNGDY R+++++V+DWD+DG HDF+G T+ +EL + Q + E KKCK G++ + ++ E T + YI GG Q+N VAIDFT SNG+P+ P SLH++ P +L+ Y A+ ++G I+QDYDSDK+FP YGFG +L +SH F + + + D G+ GVLE+Y SL V L GPT+F+ V+ +ARA+ V Q Y VLLI+TDG+I+DM Q + S+P S
Sbjct: 36 HKTEVVKNTLNPVWQPFSIPVRALCNGDYDRTVKIDVYDWDRDGSHDFIGEFTTSYRELSKAQNQFTVYEVLNPRKKCKKKKYVNSGTVTLLSFSVDSEFTFVDYIKGGTQLNFTVAIDFTASNGNPLQPTSLHYMSPY-QLSAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPLNNN------DEDPNCAGIEGVLESYFQSLRTVQLYGPTYFAPVINQ-VARAAAKVSDGSQYY-VLLIITDGVISDMTQTKEAIVSASSLPMS 304
BLAST of mRNA_H-elongata_contig17764.4674.1 vs. uniprot
Match: UPI0011EA04C4 (copine-9-like n=1 Tax=Archocentrus centrarchus TaxID=63155 RepID=UPI0011EA04C4) HSP 1 Score: 212 bits (540), Expect = 6.710e-58 Identity = 117/279 (41.94%), Postives = 171/279 (61.29%), Query Frame = 1
Query: 7 YRSPVVMNNLNPLWDTVEVPVQVLCNGDYGRSLRVEVWDWDKDGDHDFMGLVNTNLQELLEGQGREMKME---HRKKGKKCK----GSLRVERANLFQEPTLLQYIAGGLQINLMVAIDFTGSNGHPMHPDSLHHVDPSGELNQYQRAIVSIGTILQDYDSDKMFPVYGFGGRLK-GAPVSHCFLIYDRRVRGMYNADG-EAYGVNGVLEAYSASLANVTLAGPTFFSEVLQTAMARASQPVDQADQRYNVLLILTDGIINDMQQARRQTRPQPSMPTS 816
+++ V+ NNLNP+W + +PV+ LCNGDY R+++V+V+DWD+DG HDF+G T+ +EL GQ + E +KKGKK K G++ + + E T + +I GG Q+N VAIDFT SNG+P P SLH++ P ++N Y A+ ++G I+QDYDSDK+FP YGFG +L +SH F + +N + G+ GVLEAY SL V L GPT F+ V+ A++ D + +Y VLL++TDG+I+DM Q + S+P S
Sbjct: 36 HKTEVIKNNLNPVWQSFTIPVRALCNGDYDRTVKVDVYDWDRDGSHDFIGEFTTSYRELSRGQSQFNVYEVLNPKKKGKKKKYVNSGTVTLLSFKVESEHTFVDFIRGGTQLNFTVAIDFTASNGNPSQPTSLHYMSPY-QMNAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPDGKISHAFPLN-------FNTENPNCVGIEGVLEAYFQSLRTVQLYGPTNFAPVINQVARCAAEVTDGS--QYFVLLMITDGVISDMAQTKEAVVNAASLPMS 304
BLAST of mRNA_H-elongata_contig17764.4674.1 vs. uniprot
Match: UPI00201A0910 (copine-9 n=1 Tax=Perognathus longimembris pacificus TaxID=214514 RepID=UPI00201A0910) HSP 1 Score: 214 bits (545), Expect = 1.410e-57 Identity = 117/278 (42.09%), Postives = 170/278 (61.15%), Query Frame = 1
Query: 7 YRSPVVMNNLNPLWDTVEVPVQVLCNGDYGRSLRVEVWDWDKDGDHDFMGLVNTNLQELLEGQGREMKMEHRKKGKKCK-------GSLRVERANLFQEPTLLQYIAGGLQINLMVAIDFTGSNGHPMHPDSLHHVDPSGELNQYQRAIVSIGTILQDYDSDKMFPVYGFGGRLKG-APVSHCFLIYDRRVRGMYNADGEAYGVNGVLEAYSASLANVTLAGPTFFSEVLQTAMARASQPVDQADQRYNVLLILTDGIINDMQQARRQTRPQPSMPTS 816
+++ VV N LNP+W +PV+ LCNGDY R+++++V+DWD+DG HDF+G T+ +EL + Q + E KKCK G++ + ++ E T + YI GG Q+N VAIDFT SNG+P+ P SLH+V P +L+ Y A+ ++G I+QDYDSDK+FP YGFG +L +SH F + + + D G+ GVLE+Y SL V L GPT+F+ V+ +ARA+ + Q Y VLLI+TDG+I+DM Q + S+P S
Sbjct: 36 HKTEVVKNTLNPVWQPFSIPVRALCNGDYDRTVKIDVYDWDRDGSHDFIGEFTTSYRELSKAQNQFTVYEVLNPRKKCKKKKYVNSGTVTLLSFSVDSEFTFVDYIKGGTQLNFTVAIDFTASNGNPLQPTSLHYVSPY-QLSAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPLNNN------DEDPNCAGIEGVLESYFQSLRTVQLYGPTYFAPVINQ-VARAAAKISDGSQYY-VLLIITDGVISDMTQTKEAIVSASSLPMS 304
BLAST of mRNA_H-elongata_contig17764.4674.1 vs. uniprot
Match: A0A176W2E8_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W2E8_MARPO) HSP 1 Score: 219 bits (557), Expect = 2.520e-57 Identity = 116/266 (43.61%), Postives = 164/266 (61.65%), Query Frame = 1
Query: 7 YRSPVVMNNLNPLWDTVEVPVQVLCNGDYGRSLRVEVWDWDKDGDHDFMGLVNTNLQELLEGQGREMKME--------HRKKGKKCK--GSLRVERANLFQEPTLLQYIAGGLQINLMVAIDFTGSNGHPMHPDSLHHVDPSGELNQYQRAIVSIGTILQDYDSDKMFPVYGFGGRLKGAPVSHCFLIYDRRVRGMYNADGEAYGVNGVLEAYSASLANVTLAGPTFFSEVLQTAMARASQPVDQADQRYNVLLILTDGIINDMQQ 774
+R+ V NNL+P W ++V + LCNGD R LR++ W+++ G D +G +L +++E ++ ++ H G K G LR++ + + L YI GG +IN MVA+DFT SNG P PDSLH+ DPSG N+YQ++I+++G +LQ YDSD+ FP +GFGGR PVSHCF + G A E GV+G+L AYS +L +V LAGPT F+ V+ A + ASQ V Q +Q+Y VLLI+TDG+I D QQ
Sbjct: 229 FRTEVQKNNLDPQWKPIKVTLAQLCNGDKNRLLRIDCWNFNNSGKADLIGFAELSLNKIMEHFDKQETIQLQRFSHGPHMSHGHALKNTGMLRIKSCTISPYHSFLDYIVGGCEINFMVAVDFTASNGSPFQPDSLHYADPSGRPNKYQQSILAVGEVLQHYDSDQRFPAWGFGGRPIDGPVSHCFAL-----NGNQQA-AEVDGVSGILYAYSQALRHVALAGPTLFAPVINMAASIASQFVSQENQKYFVLLIITDGVITDPQQ 488 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17764.4674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17764.4674.1 >prot_H-elongata_contig17764.4674.1 ID=prot_H-elongata_contig17764.4674.1|Name=mRNA_H-elongata_contig17764.4674.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=382bp MNNLNPLWDTVEVPVQVLCNGDYGRSLRVEVWDWDKDGDHDFMGLVNTNLback to top mRNA from alignment at H-elongata_contig17764:268..6369+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17764.4674.1 ID=mRNA_H-elongata_contig17764.4674.1|Name=mRNA_H-elongata_contig17764.4674.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6102bp|location=Sequence derived from alignment at H-elongata_contig17764:268..6369+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17764:268..6369+ >mRNA_H-elongata_contig17764.4674.1 ID=mRNA_H-elongata_contig17764.4674.1|Name=mRNA_H-elongata_contig17764.4674.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2292bp|location=Sequence derived from alignment at H-elongata_contig17764:268..6369+ (Himanthalia elongata Himel1 dioecious)back to top |