mRNA_H-elongata_contig177524.4668.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig177524.4668.1
Unique Name	mRNA_H-elongata_contig177524.4668.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig177524.4668.1 vs. uniprot
Match: D8LG52_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG52_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 5.990e-16
Identity = 42/59 (71.19%), Postives = 46/59 (77.97%), Query Frame = 1

Query:    4 KVVEATTEDYPEAHDLLKRFTTLKDANRDLNEAQLRDETEAERLRVVFSSYTKERQGNI 180
            +VVEA TEDY E  DLLKRF TLKDAN++LNEAQ RDE E ERLR  FS+YTKER   I
Sbjct:  164 QVVEAATEDYSEVQDLLKRFATLKDANKNLNEAQARDEGETERLRSEFSNYTKERTNEI 222

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BLAST of mRNA_H-elongata_contig177524.4668.1 vs. uniprot
Match: A0A3L6V6H8_9STRA (DUF4200 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V6H8_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.740e-9
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1

Query:    7 VVEATTEDYPEAHDLLKRFTTLKDANRDLNEAQLRDETEAERLRVVFSSYTKERQGNI 180
            V E   EDYPE  DL+ R+ TLKDANRDL+E Q   E++ ER RV F+++TKER  +I
Sbjct:  131 VQETVPEDYPEITDLVNRYNTLKDANRDLSENQRLHESDNERKRVKFATFTKERTNDI 188

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BLAST of mRNA_H-elongata_contig177524.4668.1 vs. uniprot
Match: A0A1V9ZN48_9STRA (DUF4200 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZN48_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.230e-9
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1

Query:    7 VVEATTEDYPEAHDLLKRFTTLKDANRDLNEAQLRDETEAERLRVVFSSYTKERQGNI 180
            V E+  EDYPE  DL+ R+ TLKDANRDL+E+Q   E + ER R+ F+++TKER  +I
Sbjct:  131 VQESVPEDYPEITDLVNRYNTLKDANRDLSESQRLHEKDNERKRIKFANFTKERTNDI 188

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BLAST of mRNA_H-elongata_contig177524.4668.1 vs. uniprot
Match: W4GMF7_9STRA (DUF4200 domain-containing protein n=10 Tax=Aphanomyces TaxID=100860 RepID=W4GMF7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.140e-9
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1

Query:    7 VVEATTEDYPEAHDLLKRFTTLKDANRDLNEAQLRDETEAERLRVVFSSYTKERQGNI 180
            V E   EDYPE  DL+ R+ TLKDANRDL+E Q   E++ ER RV F+++TKER  +I
Sbjct:  143 VQETVPEDYPEITDLVNRYNTLKDANRDLSENQRLHESDNERKRVKFATFTKERTNDI 200

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BLAST of mRNA_H-elongata_contig177524.4668.1 vs. uniprot
Match: A0A067CH33_SAPPC (DUF4200 domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CH33_SAPPC)

HSP 1 Score: 58.9 bits (141), Expect = 1.090e-8
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1

Query:    7 VVEATTEDYPEAHDLLKRFTTLKDANRDLNEAQLRDETEAERLRVVFSSYTKERQGNI 180
            V E+  EDYPE  DL+ R+ TLKDANRDL+E Q   E + ER R+ F+++TKER  ++
Sbjct:  141 VQESVPEDYPEITDLVNRYNTLKDANRDLSENQALHERDNERKRIKFATFTKERTNDM 198

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BLAST of mRNA_H-elongata_contig177524.4668.1 vs. uniprot
Match: A0A6G0WWJ3_9STRA (DUF4200 domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0WWJ3_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.550e-8
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1

Query:    7 VVEATTEDYPEAHDLLKRFTTLKDANRDLNEAQLRDETEAERLRVVFSSYTKERQGNI 180
            V EA  EDYPE  DL+ R+ TLKDANRDL+E Q   E + ER R  F+++TKER  +I
Sbjct:  156 VQEAVPEDYPEITDLVNRYNTLKDANRDLSENQKVHEKDNERKRQKFATFTKERTNDI 213

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BLAST of mRNA_H-elongata_contig177524.4668.1 vs. uniprot
Match: A0A2D4C4J7_PYTIN (DUF4200 domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4J7_PYTIN)

HSP 1 Score: 57.0 bits (136), Expect = 5.520e-8
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1

Query:    7 VVEATTEDYPEAHDLLKRFTTLKDANRDLNEAQLRDETEAERLRVVFSSYTKERQGNI 180
            V E   EDYPE  DL+ R+ TLK+ NRDL++ QL  E E ER RV F+++ KER   I
Sbjct:  148 VQETVPEDYPEVADLVNRYRTLKETNRDLSQNQLHHEEENERKRVEFANFQKERANEI 205

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BLAST of mRNA_H-elongata_contig177524.4668.1 vs. uniprot
Match: A0A8K1C6S1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6S1_PYTOL)

HSP 1 Score: 53.9 bits (128), Expect = 6.760e-7
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1

Query:    7 VVEATTEDYPEAHDLLKRFTTLKDANRDLNEAQLRDETEAERLRVVFSSYTKERQGNI 180
            V E   EDYPE  DL+ R+ TLK+ NRDL++ Q++ E E E  R+ F+S+ KER   I
Sbjct:  153 VQETVPEDYPEVADLVNRYRTLKETNRDLSQNQVQHEQENESKRLEFASFQKERANEI 210

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BLAST of mRNA_H-elongata_contig177524.4668.1 vs. uniprot
Match: A0A835YX52_9STRA (DUF4200 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX52_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 9.360e-7
Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 1

Query:   10 VEATTEDYPEAHDLLKRFTTLKDANRDLNEAQLRDETEAERLRVVFSSYTKERQGNI 180
            VEA  +DYPE HDLL RF TL+ AN  L  AQ R+E   E LR  +++Y K R   +
Sbjct:  187 VEAAADDYPEVHDLLSRFRTLRAANGALTRAQARNEGATEALREEYAAYVKARANEV 243

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BLAST of mRNA_H-elongata_contig177524.4668.1 vs. uniprot
Match: A0A225W434_9STRA (DUF4200 domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W434_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.270e-6
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1

Query:    7 VVEATTEDYPEAHDLLKRFTTLKDANRDLNEAQLRDETEAERLRVVFSSYTKERQGNI 180
            V EA  EDYPE  DL+ R+ TL++ NRDL+  Q+  E E+E  R+ F+++ KER   I
Sbjct:  152 VQEAVPEDYPEVSDLVNRYHTLRETNRDLSRNQITHEEESESKRLEFAAFQKERANEI 209

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig177524.4668.1 vs. uniprot

BLAST of mRNA_H-elongata_contig177524.4668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16


Match Name	E-value	Identity	Description
D8LG52_ECTSI	5.990e-16	71.19	Flagellar associated protein n=1 Tax=Ectocarpus si...	[more]
A0A3L6V6H8_9STRA	1.740e-9	55.17	DUF4200 domain-containing protein n=1 Tax=Aphanomy...	[more]
A0A1V9ZN48_9STRA	2.230e-9	53.45	DUF4200 domain-containing protein n=1 Tax=Thrausto...	[more]
W4GMF7_9STRA	3.140e-9	55.17	DUF4200 domain-containing protein n=10 Tax=Aphanom...	[more]
A0A067CH33_SAPPC	1.090e-8	51.72	DUF4200 domain-containing protein n=3 Tax=Saproleg...	[more]
A0A6G0WWJ3_9STRA	1.550e-8	55.17	DUF4200 domain-containing protein n=2 Tax=Aphanomy...	[more]
A0A2D4C4J7_PYTIN	5.520e-8	51.72	DUF4200 domain-containing protein (Fragment) n=1 T...	[more]
A0A8K1C6S1_PYTOL	6.760e-7	48.28	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A835YX52_9STRA	9.360e-7	49.12	DUF4200 domain-containing protein n=1 Tax=Tribonem...	[more]
A0A225W434_9STRA	1.270e-6	46.55	DUF4200 domain-containing protein n=1 Tax=Phytopht...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig177524	contig	H-elongata_contig177524:1049..1228 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	80.9
Seed ortholog evalue	2.3e-13
Seed eggNOG ortholog	2880.D8LG52
Preferred name	FAP73
GOs	GO:0000226,GO:0001578,GO:0003341,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0032838,GO:0034622,GO:0035082,GO:0036159,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0044877,GO:0048870,GO:0050790,GO:0051179,GO:0051336,GO:0051674,GO:0060271,GO:0065003,GO:0065007,GO:0065009,GO:0070286,GO:0070840,GO:0070925,GO:0071840,GO:0097014,GO:0097545,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:2000574
EggNOG free text desc.	inner dynein arm assembly
EggNOG OGs	28JKH@1,2QRZS@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Ec32 ortholog description	flagellar associated protein
Ec32 ortholog	Ec-11_001920.1
Exons	1
Model size	180
Cds size	180
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930026.786038-CDS-H-elongata_contig177524:1048..1228	1622930026.786038-CDS-H-elongata_contig177524:1048..1228	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig177524 1049..1228 -
1691679251.8866894-CDS-H-elongata_contig177524:1048..1228	1691679251.8866894-CDS-H-elongata_contig177524:1048..1228	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig177524 1049..1228 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig177524.4668.1	prot_H-elongata_contig177524.4668.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig177524 1049..1228 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig177524:1049..1228-
coding sequence from alignment at H-elongata_contig177524:1049..1228-

protein sequence of mRNA_H-elongata_contig177524.4668.1

>prot_H-elongata_contig177524.4668.1 ID=prot_H-elongata_contig177524.4668.1|Name=mRNA_H-elongata_contig177524.4668.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
KKVVEATTEDYPEAHDLLKRFTTLKDANRDLNEAQLRDETEAERLRVVFS
SYTKERQGNI

mRNA from alignment at H-elongata_contig177524:1049..1228-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig177524.4668.1 ID=mRNA_H-elongata_contig177524.4668.1|Name=mRNA_H-elongata_contig177524.4668.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig177524:1049..1228- (Himanthalia elongata Himel1 dioecious)
AAAAAGGTCGTGGAGGCGACGACCGAGGACTACCCTGAAGCACATGATCT
GCTAAAGCGGTTCACGACGCTCAAGGACGCAAACAGAGACTTGAACGAGG
CGCAGCTTCGAGACGAAACGGAGGCTGAGCGCCTTAGGGTGGTCTTCAGC
AGCTATACCAAGGAAAGGCAAGGGAATATA

Coding sequence (CDS) from alignment at H-elongata_contig177524:1049..1228-

>mRNA_H-elongata_contig177524.4668.1 ID=mRNA_H-elongata_contig177524.4668.1|Name=mRNA_H-elongata_contig177524.4668.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig177524:1049..1228- (Himanthalia elongata Himel1 dioecious)
AAAAAGGTCGTGGAGGCGACGACCGAGGACTACCCTGAAGCACATGATCT
GCTAAAGCGGTTCACGACGCTCAAGGACGCAAACAGAGACTTGAACGAGG
CGCAGCTTCGAGACGAAACGGAGGCTGAGCGCCTTAGGGTGGTCTTCAGC
AGCTATACCAAGGAAAGGCAAGGGAATATAAAAAAGGTCGTGGAGGCGAC
GACCGAGGACTACCCTGAAGCACATGATCTGCTAAAGCGGTTCACGACGC
TCAAGGACGCAAACAGAGACTTGAACGAGGCGCAGCTTCGAGACGAAACG
GAGGCTGAGCGCCTTAGGGTGGTCTTCAGCAGCTATACCAAGGAAAGGCA
AGGGAATATA