mRNA_H-elongata_contig17751.4667.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17751.4667.1
Unique NamemRNA_H-elongata_contig17751.4667.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17751.4667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17751contigH-elongata_contig17751:164..1225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1062
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17751.4667.1prot_H-elongata_contig17751.4667.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17751 261..878 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930026.7200468-UTR-H-elongata_contig17751:163..2601622930026.7200468-UTR-H-elongata_contig17751:163..260Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17751 164..260 +
1691679251.8612497-UTR-H-elongata_contig17751:163..2601691679251.8612497-UTR-H-elongata_contig17751:163..260Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17751 164..260 +
1622930026.7449439-UTR-H-elongata_contig17751:878..12251622930026.7449439-UTR-H-elongata_contig17751:878..1225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17751 879..1225 +
1691679251.878762-UTR-H-elongata_contig17751:878..12251691679251.878762-UTR-H-elongata_contig17751:878..1225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17751 879..1225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930026.7336285-CDS-H-elongata_contig17751:260..8781622930026.7336285-CDS-H-elongata_contig17751:260..878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17751 261..878 +
1691679251.8685496-CDS-H-elongata_contig17751:260..8781691679251.8685496-CDS-H-elongata_contig17751:260..878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17751 261..878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17751.4667.1

>prot_H-elongata_contig17751.4667.1 ID=prot_H-elongata_contig17751.4667.1|Name=mRNA_H-elongata_contig17751.4667.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
MLEKIQAEELLTEGHSNDFCARAAGSTQSSPITVSSDTDERSPVVRRVAA
RVAGDSFEGEDRLMESDIATNYEDKHITPGAMSSPLCSDSKPTSLADQQL
APMLADGKLAPPRKDTSGSTNGDLEAVELRTEGYNHQLIFGDEDGGIIDS
IGDEEGSASGMENNREKECPNRSIGEIPDAPYMSERRGDDGGSDTASLDD
QDGYF*
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mRNA from alignment at H-elongata_contig17751:164..1225+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17751.4667.1 ID=mRNA_H-elongata_contig17751.4667.1|Name=mRNA_H-elongata_contig17751.4667.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1062bp|location=Sequence derived from alignment at H-elongata_contig17751:164..1225+ (Himanthalia elongata Himel1 dioecious)
AGAGCTTGTAGGTTTGTCGATCGGTGCGAATGATTGTTCCGCCTTGGAGT
ATGAGGTAAAGGATATAACGCCAACGGTGGGAGTGGAGGCGATAACAATG
TTAGAGAAAATTCAAGCTGAAGAACTGCTCACGGAGGGCCACAGCAATGA
TTTCTGCGCCAGGGCGGCTGGGTCAACGCAGTCGTCACCTATTACTGTCT
CCTCCGACACCGATGAAAGGTCTCCCGTAGTTCGCCGAGTGGCAGCGAGG
GTGGCGGGGGATAGCTTTGAGGGAGAGGATCGCTTGATGGAGTCAGATAT
CGCTACGAACTATGAGGATAAACACATAACGCCGGGGGCAATGTCCTCGC
CATTGTGTTCTGATTCCAAACCAACGTCCCTTGCAGACCAGCAGCTGGCG
CCGATGCTCGCTGACGGAAAATTAGCACCGCCTCGCAAAGACACTTCGGG
TTCAACCAACGGCGACCTTGAAGCAGTAGAACTTAGGACAGAAGGCTATA
ATCATCAATTGATCTTCGGAGACGAAGACGGCGGGATAATAGATAGCATC
GGAGACGAGGAGGGCAGTGCATCCGGTATGGAAAATAATAGGGAAAAAGA
GTGCCCCAATAGATCAATAGGAGAAATACCAGACGCGCCATATATGTCGG
AGAGGCGGGGTGACGACGGTGGTAGTGACACCGCCTCTCTAGATGATCAG
GATGGATATTTCTAGGGAAGGCAACAAGTGATTGGTATATCTCTGCAGCG
GTTTTTGTCGAGCCGCGAGCCACTGGCTTAATCCACATCACACACGTTGT
CGCAGTCACGGAAGGCGTGTGCTTTTCCCTGCGAGGCATTTCCACCGTGA
GAACTTCCGTGCAAAGTGCGATTTACTCTGTGTTCATTATGCTGACATCT
TGCTAGAAAGAATACGCCAAAGTTCGACGGCTTCCGCCTTAGAGGACATA
ATGCATATTATCATAGTTACGTAATTTGGGAAGCCCAGGTAAATGGGGGG
TAAAGGCGAGGGCCAGAAGCTCTAACGACTTTATAAGGTGGTAACGTGAC
GTAGGAAGCTCC
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Coding sequence (CDS) from alignment at H-elongata_contig17751:164..1225+

>mRNA_H-elongata_contig17751.4667.1 ID=mRNA_H-elongata_contig17751.4667.1|Name=mRNA_H-elongata_contig17751.4667.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig17751:164..1225+ (Himanthalia elongata Himel1 dioecious)
ATGTTAGAGAAAATTCAAGCTGAAGAACTGCTCACGGAGGGCCACAGCAA
TGATTTCTGCGCCAGGGCGGCTGGGTCAACGCAGTCGTCACCTATTACTG
TCTCCTCCGACACCGATGAAAGGTCTCCCGTAGTTCGCCGAGTGGCAGCG
AGGGTGGCGGGGGATAGCTTTGAGGGAGAGGATCGCTTGATGGAGTCAGA
TATCGCTACGAACTATGAGGATAAACACATAACGCCGGGGGCAATGTCCT
CGCCATTGTGTTCTGATTCCAAACCAACGTCCCTTGCAGACCAGCAGCTG
GCGCCGATGCTCGCTGACGGAAAATTAGCACCGCCTCGCAAAGACACTTC
GGGTTCAACCAACGGCGACCTTGAAGCAGTAGAACTTAGGACAGAAGGCT
ATAATCATCAATTGATCTTCGGAGACGAAGACGGCGGGATAATAGATAGC
ATCGGAGACGAGGAGGGCAGTGCATCCGGTATGGAAAATAATAGGGAAAA
AGAGTGCCCCAATAGATCAATAGGAGAAATACCAGACGCGCCATATATGT
CGGAGAGGCGGGGTGACGACGGTGGTAGTGACACCGCCTCTCTAGATGAT
CAGGATGGATATTTCTAGATGTTAGAGAAAATTCAAGCTGAAGAACTGCT
CACGGAGGGCCACAGCAATGATTTCTGCGCCAGGGCGGCTGGGTCAACGC
AGTCGTCACCTATTACTGTCTCCTCCGACACCGATGAAAGGTCTCCCGTA
GTTCGCCGAGTGGCAGCGAGGGTGGCGGGGGATAGCTTTGAGGGAGAGGA
TCGCTTGATGGAGTCAGATATCGCTACGAACTATGAGGATAAACACATAA
CGCCGGGGGCAATGTCCTCGCCATTGTGTTCTGATTCCAAACCAACGTCC
CTTGCAGACCAGCAGCTGGCGCCGATGCTCGCTGACGGAAAATTAGCACC
GCCTCGCAAAGACACTTCGGGTTCAACCAACGGCGACCTTGAAGCAGTAG
AACTTAGGACAGAAGGCTATAATCATCAATTGATCTTCGGAGACGAAGAC
GGCGGGATAATAGATAGCATCGGAGACGAGGAGGGCAGTGCATCCGGTAT
GGAAAATAATAGGGAAAAAGAGTGCCCCAATAGATCAATAGGAGAAATAC
CAGACGCGCCATATATGTCGGAGAGGCGGGGTGACGACGGTGGTAGTGAC
ACCGCCTCTCTAGATGATCAGGATGGATATTTCTAG
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