mRNA_H-elongata_contig17746.4666.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17746.4666.1
Unique NamemRNA_H-elongata_contig17746.4666.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17746.4666.1 vs. uniprot
Match: D8LE22_ECTSI (Probable glycine-sarcosine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE22_ECTSI)

HSP 1 Score: 285 bits (730), Expect = 1.170e-87
Identity = 148/271 (54.61%), Postives = 191/271 (70.48%), Query Frame = 3
Query:   90 EVWGGITIHVGRYDLLKGKDANLAEKARIKRASELATEMLLRKAFPDHGPSPSG----YTMMDMGSSYGHLARKVAESYGCRVVCIELSVAANMENLKLTAAAGLSEKVIIPGERSYFDTQMPASSMDIVVSQDAFMHASTEHHKAIKEAARVLKPGGIFVFSDLMSSDTTDKTKLVEIYKNIEIVGLANPGSYKRWGEEFGLEFVEYDEYASNVATHYASLAEVIKDVRGSMAGVESRYLDWMTVRYSACANAAKHGLLTSGLMVFKKKA 890
            + WG   IH+GRYDLL   +  +  + RIKRA+ L+T  LL K FP   PSP G     T+MDMGS++G  AR  A+ +GC VVCI++S   N  N KL+AAAGLS+K+IIPGERSYFDT+MPA+SMD V+SQDAF HASTEHH+AIKEAARVLKPGG+  FSD M SD  D TKL E+Y++I I  LA+PG Y+ WG  +GLE VE+D+  SN + HY  L +VI  +RG++ GV+  +LD MT RY +   AA+  +L  G++V KK +
Sbjct:    2 QAWGE-DIHIGRYDLLSTDELKMGPRERIKRATALSTRGLLGKVFP---PSPGGETTIMTVMDMGSAHGSTARTAAKEHGCNVVCIDISRGFNAVNAKLSAAAGLSDKIIIPGERSYFDTEMPAASMDAVLSQDAFGHASTEHHRAIKEAARVLKPGGVMAFSDFMQSDDADPTKLGEVYQHIGISRLASPGLYEEWGNAYGLEPVEFDDRTSNFSVHYQHLVDVIASLRGTIKGVDDEFLDRMTSRYGSWCVAAEFDVLRWGVIVLKKSS 268          
BLAST of mRNA_H-elongata_contig17746.4666.1 vs. uniprot
Match: A0A6H5KC33_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KC33_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 4.570e-74
Identity = 134/302 (44.37%), Postives = 185/302 (61.26%), Query Frame = 3
Query:    6 LSTKGGVGTIEATAQDYYDNSNAIKVHKEVWGGITIHVGRYDLLKGKDANLAEKARIKRASELATEMLLRKAFP---------DHGPSPSGYTMMDMGSSYGHLARKVAESYGCRVVCIELSVAANMENLKLTAAAGLSEKVIIPGERSYFDTQMPASSMDIVVSQDAFMHASTEHHKAIKEAARVLKPGGIFVFSDLMSSDTTDKTKLVEIYKNIEIVGLANPGSYKRWGEEFGLEFVEYDEYASNVATHYASLAEVIKDVRGSMAGVESRYLDWMTVRYSACANAAKHGLLTSGLMVFKK 884
            ++T   +  I + A+DYYD+ NA   +++VWGG  IHVG Y   +G+D  L    RI +AS L TE LL + FP         +  P  S  TMMDMGS YG  AR  A+  GC+VVCI ++   N  N  +T  AGL +KVI+PGE+S+F+T MP +S D+V SQDA +HA +E H+A+ EAARVLKPGG  VF+D+M S   D   L E+Y+ I +  +A P SY +WG+  GLEFVE+ +   N+A HY ++ EV+   RG++ GVE  ++D M     A  +AA   L+  G +VF K
Sbjct:    6 VATSDKIDEISSVAKDYYDSDNAFNFYRQVWGGEHIHVGLYTRFEGEDVELKGVDRISKASSLCTEELLSRCFPAVATVTSNGEAAPPASECTMMDMGSGYGGTARAAAKKLGCKVVCINVASRENEINTAITKDAGLQDKVIVPGEKSFFETGMPDASCDVVTSQDALLHAGSERHRALGEAARVLKPGGRMVFTDIMQSKEADPKDLQEVYQRIHLDDMATPESYAKWGKAHGLEFVEFVDMTDNLALHYGAVREVLMSRRGNLDGVEDEFIDNMARGLDAWTSAAGRDLIRWGCLVFTK 307          
BLAST of mRNA_H-elongata_contig17746.4666.1 vs. uniprot
Match: D7G7W9_ECTSI (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W9_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 6.300e-66
Identity = 123/280 (43.93%), Postives = 175/280 (62.50%), Query Frame = 3
Query:   60 DNSNAIKVHKEVWGGITIHVGRYDLLKGKDANLAEKARIKRASELATEMLLRKAFPD----HGPSPSGY-TMMDMGSSYGHLARKVAESYGCRVVCIELSVAANMENLKLTAAAGLSEKVIIPGERSYFDTQMPASSMDIVVSQDAFMHASTEHHKAIKEAARVLKPGGIFVFSDLMSSDTTDKTKLVEIYKNIEIVGLANPGSYKRWGEEFGLEFVEYDEYASNVATHYASLAEVIKDVRGSMAGVESRYLDWMTVRYSACANAAKHGLLTSGLMVFKK 884
            ++S AI  H EVWGG  IH+G +  L+G+   L    RIK+AS L+TE +L + FP     +G  PS   TM+D+G  YG  AR  A+  GC+VVCI +S   N  N+ +T  AGL +KVI+PGE+S+F+T +P +S D+V SQDA +H+  E H+++ EAARVLKPGG  VFSD+M    TD   L ++Y    +  ++ P  Y +WG+  GLEFVE+ + A N+ATHY S+ +V+   RG++ GVE  ++D M     A  +AA+  L+  G M F K
Sbjct:    2 NSSEAIFQH-EVWGGEHIHIGLHSKLEGEHVKLEGVERIKKASSLSTEEILSRCFPSGTNGNGAPPSAECTMVDLGCGYGGTARVAAKKLGCKVVCINVSKRENETNVAMTKEAGLQDKVIVPGEKSFFETGLPDASCDVVASQDALLHSGPERHRSMAEAARVLKPGGRMVFSDIMQFKETDPKDLQDVYNRCHLEDMSTPEEYIKWGKVHGLEFVEFVDMAENLATHYGSVRDVLVSRRGNLEGVEDEFIDNMVRGIEAWISAAQRNLICWGYMTFTK 280          
BLAST of mRNA_H-elongata_contig17746.4666.1 vs. uniprot
Match: D7G5Z7_ECTSI (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Z7_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 3.810e-65
Identity = 125/305 (40.98%), Postives = 179/305 (58.69%), Query Frame = 3
Query:    3 ELSTKGGVGTIEATAQDYYDNSNAIKVHKEVWGGITIHVGRYDLLKGKDANLAEKARIKRASELATEMLLRKAFP-----------DHGPSPSGYTMMDMGSSYGHLARKVAESYGCRVVCIELSVAANMENLKLTAAAGLSEKVIIPGERSYFDTQMPASSMDIVVSQDAFMHASTEHHKAIKEAARVLKPGGIFVFSDLMSSDTTDKTKLVEIYKNIEIVGLANPGSYKRWGEEFGLEFVEYDEYASNVATHYASLAEVIKDVRGSMAGVESRYLDWMTVRYSACANAAKHGLLTSGLMVFKK 884
            + S       I ATA+ +Y++ NA   + +VWGG  IHVG Y  L  ++A L    RIK+AS L  E LL + FP           D  P  S  TM+DMGS YG  AR  A++ GC+V CI ++   N  N  L+ AAG+ + VIIPGE+SYFDT +P +  ++V SQDA +HA +E H+A+ EAAR+LKPGG  VF+D+M ++  D   L E+Y+ + +  L  P SY +W E +GL FVE+ +   ++ THY S+ EV+   RG+  G+E  ++D M     A  +AA+  L+  G + F K
Sbjct:  317 DSSDDNATDAISATAEGWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPASANGTNGTNGDGAPHTSESTMVDMGSGYGGSARLAAKTLGCKVYCINVTSRENDVNRALSKAAGIEDLVIIPGEKSYFDTGLPDACCEVVTSQDALLHAGSERHRAVGEAARLLKPGGRMVFNDVMQTNHADPKDLQEVYERVRLQDLGTPKSYAKWAESYGLTFVEFSDRTPDMKTHYESVKEVLMSHRGTSDGMEDEFIDNMARGLDAWVSAAERDLICWGYVTFAK 621          
BLAST of mRNA_H-elongata_contig17746.4666.1 vs. uniprot
Match: A0A835YZA4_9STRA (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZA4_9STRA)

HSP 1 Score: 224 bits (570), Expect = 6.100e-64
Identity = 121/285 (42.46%), Postives = 173/285 (60.70%), Query Frame = 3
Query:   33 IEATAQDYYDNSNAIKVHKEVWGGITIHVGRYDLLKGKDANLAEKARIKRASELATEMLLRKAFPDHGPSPSGYTMMDMGSSYGHLARKVAESYGCRVVCIELSVAANMENLKLTAAAGLSEKVIIPGERSYFDTQMPASSMDIVVSQDAFMHASTEHHKAIKEAARVLKPGGIFVFSDLMSSDTTDKTKLVEIYKNIEIVGLANPGSYKRWGEEFGLEFVEYDEYASNVATHYASLAEVIKDVRGSMAGVESRYLDWMTVRYSACANAAKHGLLTSGLMVFKKK 887
            I   AQ YYD+ +A   +K+VWGG  IHVG YD  +  D+ +    RIK ASEL+ + L   A     P  S   +MDMGS+YG  AR  A++YGC V CI++S   N  N   TAA GL++KV+IPGERS+F+T  PA + D VVSQD+ +HA +E  +AI+EAARVLKPGG  VF+D+M S+  +  +L  +Y+ I +  + +P SY+ W E  GL+ V +++  SN+A HY ++  V++  R  +  +   Y+D M     A  NAA    L  G  +F+K+
Sbjct:   13 INDVAQQYYDSEDAFNFYKQVWGGSFIHVGLYDDPQVTDS-MDPMERIKLASELSAKRLFATA----EPLDSSSKVMDMGSAYGGNARLCAKTYGCTVTCIDISCKENEVNRSTTAAEGLADKVLIPGERSFFETGEPAGAYDAVVSQDSLLHAGSERCRAIEEAARVLKPGGCLVFTDIMQSNDANTAELDAVYRRIHLEDMGSPASYQAWAERCGLKLVGFEDRTSNLAAHYGAVKGVLEAKRAELTNISPAYVDNMIRGLDAWVNAAGKSNLCWGYFLFRKQ 292          
BLAST of mRNA_H-elongata_contig17746.4666.1 vs. uniprot
Match: A0A6H5L7A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A2_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 2.820e-59
Identity = 123/317 (38.80%), Postives = 178/317 (56.15%), Query Frame = 3
Query:   33 IEATAQDYYDNSNAIKVHKEVWGGITIHVGRYDLLKGKDANLAEKARIKRASELATEMLLRKAFP-----------DHGPSPSGYTMMDMGSSYGHLARKVAESYGCR---VVCIELSVAANMENLKLTAAAGLSEKVIIPGERSYFDTQMPASSMDIVVSQDAFMHASTEHHKAIKEAARVLKPGGIFVFSDLMSSDTTDKTKLVEIYKNIEIVGLANPGSYKRWGEEFGLEFVEYDEYASNVATHYASLA-------------------EVIKDVRGSMAGVESRYLDWMTVRYSACANAAKHGLLTSGLMVFKK 884
            I ATA+ +Y++ NA   + +VWGG  IHVG Y  L  ++A L    RIK+AS L  E LL + FP           +  P  S  TM+DMGS YG  AR  A++ GC+   V CI ++   N  N  L+ AAG+ + VIIPGE+SYFDT +P +  ++V SQDA +HA +E H+A+ EAAR+LKPGG  VF+D+M ++  D   L ++Y+ + +  L  P SY +W E +GL FVE+ +   ++ THY S+                    EV+   RG+  G+E  ++D M     A  +AA+ GL+  G + F K
Sbjct:  181 ISATAEGWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPASANGTNGTNGNGAPPTSESTMVDMGSGYGGSARLAAKTLGCKAMNVYCINVTSRENDVNRALSKAAGIEDLVIIPGEKSYFDTGLPDACCEVVTSQDALLHAGSERHRAVGEAARLLKPGGRMVFNDVMQTNHADPKDLKDVYERVRLQDLGTPKSYAKWAESYGLTFVEFSDRTPDMKTHYESVGLRRFQFKADGQNIAALAVKEVLMSHRGTSDGMEDEFIDNMARGLDAWVSAAERGLICWGYVTFAK 497          
BLAST of mRNA_H-elongata_contig17746.4666.1 vs. uniprot
Match: A0A6T8NTF3_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8NTF3_HEMAN)

HSP 1 Score: 211 bits (538), Expect = 4.770e-59
Identity = 114/288 (39.58%), Postives = 179/288 (62.15%), Query Frame = 3
Query:   42 TAQDYYDNSNAIKVHKEVWGGITIHVGRYDLLKGKDANLAEKARIKRAS-ELATEMLLRKAFPDHGPSPS---GYTMMDMGSSYGHLARKVAESYGCRVVCIELSVAANMENLKLTAAAGLSEKVIIPGERSYFDTQMPASSMDIVVSQDAFMHASTEHHKAIKEAARVLKPGGIFVFSDLMSSDTTDKTKLVE--IYKNIEIVGLANPGSYKRWGEEFGLEFVEYDEYASNVATHYASLAEVIKDVRGSMAGVESRYLDWMTVRYSACANAAKHGLLTSGLMVFKKK 887
            TAQ+YYD+ +A   +K VWGG  IHVG YD+++ K   +       +AS  L+TE L  +      PS +   G  + DMG++YG  AR  A  YGC+V+C+E+S   N  N K TA AGL +KV+IP E S+FDT+  ++SMD+VVSQD+ +HA +E HK I+EA+R+LK GG FVF+D+M SD+ D   L    + K I +  + +P  YK+   + GL+FV++++  + +  HY +++++++  RG ++   ++++D M    SA   A  +G L  G +VF+K+
Sbjct:   33 TAQNYYDSDDAFIFYKHVWGGEAIHVGLYDVVQRKGEGIEADIEWSKASARLSTEQLFTQV-----PSQTLKEGMMVCDMGAAYGEAARHCASKYGCKVLCVEVSKKENEFNRKKTAEAGLQDKVLIPKELSFFDTEAESTSMDLVVSQDSLLHAGSERHKVIEEASRILKKGGYFVFTDIMQSDSCDPEVLASTGVLKRIHLENMGSPEVYKKHAADNGLKFVKFEDRTACIVHHYGTVSKILEAKRGELS-CSAQFVDNMLAGLSAWVAAGDNGSLCWGFLVFQKE 314          
BLAST of mRNA_H-elongata_contig17746.4666.1 vs. uniprot
Match: A0A6H5L6E6_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E6_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 1.960e-54
Identity = 106/260 (40.77%), Postives = 153/260 (58.85%), Query Frame = 3
Query:    9 STKGGVGTIEATAQDYYDNSNAIKVHKEVWGGITIHVGRYDLLKGKDANLAEKARIKRASELATEMLLRKAFP-----------DHGPSPSGYTMMDMGSSYGHLARKVAESYGCRVV---CIELSVAANMENLKLTAAAGLSEKVIIPGERSYFDTQMPASSMDIVVSQDAFMHASTEHHKAIKEAARVLKPGGIFVFSDLMSSDTTDKTKLVEIYKNIEIVGLANPGSYKRWGEEFGLEFVEYDEYASNVATHYASLA 746
            S       I ATA+ +Y++ NA   + +VWGG  IHVG Y  L  ++A L    RI++AS L  E LL + FP           +  P  S  TM+DMGS YG  AR  A++ GC+ +   CI ++   N  N  L+ AAG+   VIIPGE+SYFDT +P +  ++V SQDA +HA +E H+A+ EAAR+LKPGG  VF+D+M ++  D   L E+Y+ + +  L  P SY +W   +GL FVE+ +   ++ THY S++
Sbjct:  116 SDDNATDAISATAKGWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRIEKASILNAEELLARCFPASANGTNGTNGNGAPPTSESTMVDMGSGYGGSARLAAKTLGCKAIVVYCINVTSRENDVNRALSKAAGIENLVIIPGEKSYFDTGLPDACCEVVTSQDALLHAGSERHRAVGEAARLLKPGGRMVFNDVMQTNNADPKDLQEVYERVRLQDLGTPKSYAKWAASYGLTFVEFSDRTPDMKTHYESVS 375          
BLAST of mRNA_H-elongata_contig17746.4666.1 vs. uniprot
Match: A0A6H5KZ03_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ03_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.400e-42
Identity = 84/145 (57.93%), Postives = 106/145 (73.10%), Query Frame = 3
Query:   87 KEVWGGITIHVGRYDLLKGKDANLAEKARIKRASELATEMLLRKAFPDHGPSPSG---YTMMDMGSSYGHLARKVAESYGCRVVCIELSVAANMENLKLTAAAGLSEKVIIPGERSYFDTQMPASSMDIVVSQDAFMHASTEHHK 512
            ++ WG   IH+GRYDLL   +  +  + RIKRA+ L+T  LL K FP   PSP G    T+MDMGS++G  AR  A+ +GC VVCI++S   N  N KL+AAAGLS+K+IIPGERSYFDT+MPA+SMD V+SQDAF HASTEHH+
Sbjct:    3 QQAWGE-DIHIGRYDLLSMDELKMGPRERIKRATALSTRGLLGKVFP---PSPGGETTMTVMDMGSAHGSTARTAAKEHGCNVVCIDISRGFNTVNAKLSAAAGLSDKIIIPGERSYFDTEMPAASMDAVLSQDAFGHASTEHHR 143          
BLAST of mRNA_H-elongata_contig17746.4666.1 vs. uniprot
Match: L1JQG8_GUITC (Methyltransf_11 domain-containing protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1JQG8_GUITC)

HSP 1 Score: 161 bits (407), Expect = 8.830e-41
Identity = 94/295 (31.86%), Postives = 145/295 (49.15%), Query Frame = 3
Query:   54 YYDNSNAIKVHKEVWGGITIHVGRYDLLK----------GKDANLAEKARIKRASELATEMLLRKAFPDHGPSPSGYTMMDMGSSYGHLARKVAESYGCRVVCIELSVAANMENLKLTAAAGLSEKVIIPGERSYFDTQMPASSMDIVVSQDAFMHASTEHHKAIKEAARVLKPGGIFVFSDLMSSDTTDKTKLVEIYKNIEIVGLANPGSYKRWGEEFG------LEFVEYDEYASNVATHYASLAEVIKD-VRGSMAG-VESRYLDWMTVRYSACANAAKHGLLTSGLMVFKK 884
            YYD  +A   +  +WGG   HVG Y   +          G      E   I  AS  + E +L  + P       G  M DMG++YG  AR +++ YGC+VVC+ELS   N  N++      + +K+I+PGE S+ DTQ  A   D  VS+D+ +HA       + EAARVL+ GG+FVFSD+M  D  D + L ++Y  I +  + +P  Y  W  + G       +   Y++++  +A HY  + ++++   R  + G V   Y+  M     A   A+  G +  G  VF+K
Sbjct:    4 YYDEGDAFNFYLTIWGGDHCHVGIYTAEEEAQDMQPPAGGVKGESTESDTILLASNRSLEKILELSKPAFEGRSEGLAM-DMGAAYGGCARALSKKYGCKVVCVELSKRENEVNIQRNVELKMQDKIIVPGELSFLDTQQEAGVFDCCVSEDSILHAGKARPAVVAEAARVLRKGGLFVFSDIMQKDCVDTSTLKDVYDRIGLEDMGSPAKYIEWASQAGKLLASSFQLKRYEDFSPQIAVHYGKILKMLEGPTREKLRGKVSDEYIVSMMKGLRAWVAASHAGSIVWGFFVFEK 297          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17746.4666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE22_ECTSI1.170e-8754.61Probable glycine-sarcosine methyltransferase n=1 T... [more]
A0A6H5KC33_9PHAE4.570e-7444.37Methyltransf_11 domain-containing protein n=2 Tax=... [more]
D7G7W9_ECTSI6.300e-6643.93Putative sarcosine-dimethylglycine methyltransfera... [more]
D7G5Z7_ECTSI3.810e-6540.98Putative sarcosine-dimethylglycine methyltransfera... [more]
A0A835YZA4_9STRA6.100e-6442.46Putative sarcosine-dimethylglycine methyltransfera... [more]
A0A6H5L7A2_9PHAE2.820e-5938.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6T8NTF3_HEMAN4.770e-5939.58Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A6H5L6E6_9PHAE1.960e-5440.77Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A6H5KZ03_9PHAE1.400e-4257.93Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
L1JQG8_GUITC8.830e-4131.86Methyltransf_11 domain-containing protein n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17746contigH-elongata_contig17746:954..5948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.1
Seed ortholog evalue1.6e-65
Seed eggNOG ortholog2880.D8LE22
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2E18F@1,2S8KF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size2170
Cds size744
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930026.5393586-UTR-H-elongata_contig17746:953..10451622930026.5393586-UTR-H-elongata_contig17746:953..1045Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17746 954..1045 +
1691679251.789197-UTR-H-elongata_contig17746:953..10451691679251.789197-UTR-H-elongata_contig17746:953..1045Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17746 954..1045 +
1622930026.5571756-UTR-H-elongata_contig17746:1212..13231622930026.5571756-UTR-H-elongata_contig17746:1212..1323Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17746 1213..1323 +
1691679251.8010814-UTR-H-elongata_contig17746:1212..13231691679251.8010814-UTR-H-elongata_contig17746:1212..1323Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17746 1213..1323 +
1622930026.662229-UTR-H-elongata_contig17746:4725..59481622930026.662229-UTR-H-elongata_contig17746:4725..5948Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17746 4726..5948 +
1691679251.8536234-UTR-H-elongata_contig17746:4725..59481691679251.8536234-UTR-H-elongata_contig17746:4725..5948Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17746 4726..5948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930026.5692601-CDS-H-elongata_contig17746:1323..14431622930026.5692601-CDS-H-elongata_contig17746:1323..1443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17746 1324..1443 +
1691679251.8087234-CDS-H-elongata_contig17746:1323..14431691679251.8087234-CDS-H-elongata_contig17746:1323..1443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17746 1324..1443 +
1622930026.5852342-CDS-H-elongata_contig17746:1740..18381622930026.5852342-CDS-H-elongata_contig17746:1740..1838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17746 1741..1838 +
1691679251.8165176-CDS-H-elongata_contig17746:1740..18381691679251.8165176-CDS-H-elongata_contig17746:1740..1838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17746 1741..1838 +
1622930026.600182-CDS-H-elongata_contig17746:2767..29571622930026.600182-CDS-H-elongata_contig17746:2767..2957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17746 2768..2957 +
1691679251.8239796-CDS-H-elongata_contig17746:2767..29571691679251.8239796-CDS-H-elongata_contig17746:2767..2957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17746 2768..2957 +
1622930026.6169596-CDS-H-elongata_contig17746:3334..34631622930026.6169596-CDS-H-elongata_contig17746:3334..3463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17746 3335..3463 +
1691679251.8314717-CDS-H-elongata_contig17746:3334..34631691679251.8314717-CDS-H-elongata_contig17746:3334..3463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17746 3335..3463 +
1622930026.6307745-CDS-H-elongata_contig17746:3921..41001622930026.6307745-CDS-H-elongata_contig17746:3921..4100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17746 3922..4100 +
1691679251.8391001-CDS-H-elongata_contig17746:3921..41001691679251.8391001-CDS-H-elongata_contig17746:3921..4100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17746 3922..4100 +
1622930026.6444688-CDS-H-elongata_contig17746:4697..47251622930026.6444688-CDS-H-elongata_contig17746:4697..4725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17746 4698..4725 +
1691679251.846424-CDS-H-elongata_contig17746:4697..47251691679251.846424-CDS-H-elongata_contig17746:4697..4725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17746 4698..4725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17746.4666.1prot_H-elongata_contig17746.4666.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17746 1324..4725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17746.4666.1

>prot_H-elongata_contig17746.4666.1 ID=prot_H-elongata_contig17746.4666.1|Name=mRNA_H-elongata_contig17746.4666.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=248bp
MLLRKAFPDHGPSPSGYTMMDMGSSYGHLARKVAESYGCRVVCIELSVAA
NMENLKLTAAAGLSEKVIIPGERSYFDTQMPASSMDIVVSQDAFMHASTE
HHKAIKEAARVLKPGGIFVFSDLMSSDTTDKTKLVEIYKNIEIVGLANPG
SYKRWGEEFGLEFVEYDEYASNVATHYASLAEVIKDVRGSMAGVESRYLD
WMTVRYSACANAAKHGLLTSGLMVFKKKAVSLHCATVEWTINDPSLA*
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mRNA from alignment at H-elongata_contig17746:954..5948+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17746.4666.1 ID=mRNA_H-elongata_contig17746.4666.1|Name=mRNA_H-elongata_contig17746.4666.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4995bp|location=Sequence derived from alignment at H-elongata_contig17746:954..5948+ (Himanthalia elongata Himel1 dioecious)
AGGAATTGTCTACTAAAGGTGGAGTAGGCACCATCGAAGCTACCGCCCAA GATTACTACGACAACTCGAACGCCATCAAAGTTCACAAAGAGGTACTTCG CTGGACAAGTTAATTTCAGGTCCACCAGCGACTTTGAACACGTATAGAGA TGGGTGAGGTGTTCAGTAATAGTTTATTGTGGCTCTTTCCCTCGCCAACC AGAGTCTAATATCAGCAAAATATCGTTCGAATATACCCTCAATCCAATCC TGGTCACAGGTATGGGGAGGTATTACCATCCATGTTGGCAGGTATGACCT CCTCAAGGGCAAGGACGCCAACCTGGCGGAAAAGGCGCGCATTAAGCGTG CTTCAGAGCTGGCCACAGAGATGTTATTGAGGAAAGCGTTTCCCGATCAC GGCCCTTCTCCCAGCGGATACACCATGATGGATATGGGTTCTTCATACGG CCACCTCGCACGGAAAGTCGCCGAAAGCTACGGGTGCAGGGTAAACGTTT TATGGAATAGATCGCATCCCGGTCGAGGTGGACCAAAAACTGGACAATTG AATTTTGTCAAAAAAACTTTTGAGACCCGATCGTACCGCAAATCAAGCAT GCGTCGTCGCTTGAGCCTAGTTTCGCCCTTTGGGCAATATCATCGGTTAA CCACATAGGACTAATAGCGGTTGTATGATATCGGATTCCTATAGCTTGGA AGAGCGTGGAGGTTCACATTCAAAAATCGCATTGGCATACAATATACCCT CAAGGTCTCTTTTCGATTCAATATCCCTTCTTCGAAGGTGGTGTGCATCG AACTGTCCGTCGCGGCGAATATGGAGAATTTAAAGCTCACCGCTGCTGCT GGTCTCTCGGAAAAGGTCATCATTCCCGGCGAAAGGTATGTTTTCTAATG TTTTACTATAATTTGCTCCGGGAGAGGGTGGAGAGGTGGATGCAACGCCA ATGAAGTCCCAGTTTATGTTCGATTTAGTAGCTCGTTTAGTGTAATTGTT GGAACAACGACGTGAGATCGGGGTAGACCCCGTGCCCCGGAAACCCGTGC GATACTTCCCCAAGCTGGAGACTCCAAGCGATTATTCTGCACATGGCGAA ATACCACGTGCTGCCTTTGTACATTTTCACACTTTCCTTTTTGCGGCACT TGATAACAAAAATATATTATATACTTGAAATACTAAGAGAAATTGTCCCC AGTTATAATCGACCCGGAAATATGTGTCTCTTATTATACACTAAAATTCG TTAATGGGGTTACTTGAACATGCAGCACTCGTTACTAAGCCACCTTAGGG ACTACTGGCCCAGTGTCGGTGGACCCTCGGTGGTGAATGATATCTATATG CAAATGCGCGAACTGAGAAACTTGGGAATGGTCGAATGCGGTTGGCCGTA GAGATGGATATCGTCGTGAAAAGCGGGAGAAACCAGAGGATTCCGGGAGT AAGAGCAATATTTAGTCTGGATGAAAACGATGAGCATGCTGACGCGGGAC GGCACGACCAAACCCGTCTCGCGACACCAAACTATCCCGCGCGAACGGGG AGAGGAAGATTGTTTGGCTCTTTAGAGCTGGCCACGCGCAGGATTGATTG TCGATCATATCATTTTGATCCATACTCTGCTATATGTGATGACCAAACAA ACACACATATACATACAAAGCCTGCCCGCCATTCAGAAATCGTGAACGTA ATGGCTTGCAAAGATCCGGTGAGTTTAACACAATCGCCCGCCAACTCCTC ACCCTTTCTCGCTTTCTATATATTTTTCCTGATTGTCTTTCTTAATTTTG GGAGAGAGGATCAGGTCCTACTTTGATACCCAAATGCCCGCTTCTAGTAT GGATATTGTCGTATCCCAAGACGCTTTTATGCACGCTAGCACGGAGCACC ACAAGGCGATCAAGGAAGCTGCTCGAGTGCTCAAGCCTGGTGGTATCTTC GTTTTCAGCGACCTAATGAGTTCGGACACCACCGATAAAACCAAGCTCGT CGAGGCACGTTATATATTCCCAGTTATTTTATGTAGAATACCGTGAACCC CACAGCGCTTTTATTTAATCTACCGTGGGATTTGTCAGCGACGTGCGTTC TTGGGCAAAGCTTGCTCGAAGTGATGAGCTCTTAAGCGTCTAGAGTGAAC TAGTGGAGCAGGCAGTTCTGATATTCTGTTCGAGCATGAGTTGGTGTTCA GCGTCCCGGAAAGAGGGGGCCGCTCGCTTCGCAACCAGTTTGGTTGCGAA TTTCAATTAAGCCACGGCAATGTATGGTGAATCAGCCCCCCAGGGTATAG TATACCGTTAGCCGCGCTATTTCTCACCCTGATACCGCGCCTACAGCCCT TCAATACGTGGTATTTTTTACTCATATCCAGATCTACAAGAACATCGAAA TCGTCGGGCTGGCCAACCCTGGGTCGTATAAACGCTGGGGCGAGGAGTTT GGCCTGGAATTTGTCGAGTACGACGAATACGCCTCGAACGTCGCCACACA CTACGCCTCTGTAAGCACGGTTCCATGCCGATGATCGCGGCGAACGTAGC AGGATATTATATATGAAGATATAGTACACACTTAATTTTTGTGGTCTACA TCATGTATACGTGCAATTATAACTCGGTTAGATGGGGCTTATCTGGTCTG GATGTCATTATCTTATTCTTCATGAATTCGAGATGAATTCGAGGACAGCG ACCGAGTTTCGCTCTGATAAACCAGTAGTCGCCTTGACAAAGATCGCTTT GTCACGCCACGTCAGTAATTGCCCTTTCGCAAACTTACAACGAAAACCCA CTGGTGCATCATAGGGCACTACCTGCGCAGCGACCCAAGCTCATAGTGCA GACTAATGCAATGTGCCATTAACAGTTTCCGCAGAGCACATTATAGAGTG TGAACTCCTTTGACGTGTACCCGTTGGTGATGGAATGATAAACCTGGGGA TATCGCGCATACTCACAGCTCGCGGAGGTGATAAAAGATGTGCGCGGAAG TATGGCGGGCGTGGAGTCCCGCTACCTTGATTGGATGACAGTGCGGTACA GCGCCTGCGCGAACGCTGCCAAACATGGCCTATTGACGAGCGGGCTGATG GTCTTCAAGAAGAAGGCCGTGAGTCTTCACTGTGCGACTGTAGAATGGTA AACCCCAAATATTTCACATATACGTGCATACGCGACTTCAGCGCTTCCAG TTATTATATATAAATAAATATAGCAGTGTACTGTGTTGCAGAATCCGGGT TTGTAAATCGTTATTTAGAGGGATTGAAGAGGGCAGGTCCTGGTCTGGTA AAAAGACATTAGAAATGATAACTGGTTTATGCCGGTTCTTGAAGGGAAAT ACGCAACAAAATGTCTCGGTGGTCTCGGCGGCGTAGTGTGTAAAGACGGG ATGCAGTACACAGGTGCACATGGCTTTCAAACGCTCATCATGTCCGTTTG ACCAAAAAGCAACACATATAAGAAATGATGTCGCGAAATCTGAGGAACTT AATACGTTATTCATAAAGCGCACCCTAGCGTATTTACTTATCTACTACCA AATACTATACATAGATGGATGTTGTTGAGGGTGTGTAGAGCTCGAAACTC TCCCATGTTCATCGAACGTATATTAGGGAAACCACCTAGCGGGTCATATT ATTAGTTGGTTTTGGTGCTAGATTCGTAGAGCATAGTCAAGAAACCGATT ATTGACCCCATTTTTTATTATACATCCCATCTTTATTATTTCAGGACCAT AAATGATCCTTCGCTGGCGTAGCGAGGAACGACTCTTCCGCAGCTCAATT TATCACATGGAGAAAGTATCCGCGGTGAAAAGAACATCGGTTCAAAGCAT TGGATGGGTATCAGCAAACGGATCATCACCCATTGCCTGTAAATCTACGG TAACGGTTTTACGTGACGAACACATGCTAAACGTGCAAAGATTAGAGTAA GTAGGGGGGATATGCTTAGGTCACGACGCGGTATGATGAGGTGATCAGAG CTGTATATAATAATTGAGCCATTCTGGAGCTACGTTTGTCTTTCTACAAG TTTTTGTACGAGCGGAAACTCATTATATATGTACATGCTCCGTTATGTAC ATTTATTTGCCGGCCAAGGGATGTTTTACTTTGCATAGTTGGATTTTGTT TCTGAAAGTACCGCAAGCATTTCCGGTCAACTTTCTGCTGTTCCAGCATA GTACAAGCTGACATATTGTCATCGAGTGGCAATGATGGAAGTGATTGAGA TGTAGCGGATAGATTGAGATTGCGTCTGACGGTATTAAAGCTGCTTTTGT ACGGCTTCTGACTCATGATTTAGAGAATTATCTACCCTTGTCAGTCCATA CTCACTTCACAGTGCGCGTACACGCACAGCATGATCTTACTGAAATAATA ATCTGACTCTTTTTTGGCAATCACCCCCTCCCCCTAAATATTAAATATAG ATTCGGTCTGCTGATAGCTCAAAAGGACGTTCTTTGTGATATTACATCCA CCTCCGATACTGCCTGTAAAGTATCGTACATATATCCACTGTACCAATCG TGGGCGTGGGGATAGATATGTGCACATTAACTAGTCCATGGGGCTACCTT AGTAGGCTGCACCCGTTACTCAAGCTAGCTTAAGGACTGTTGGCTTAGAA TGGTGGAATCTCCGTGGTAAACGCCAACTCTATGCAATCGCGTGACCTAA AAAAATCAGGATTGTCCGATATAGACGCCGTCGGGGAAGGCGAGATCCGT CTCCCGAGGCCAATTCTCAGGCGCGAACATGGACATGAAAAATGTTTTTT TCCTGTTTAGATGACCAAAAGCAGCATGGAACAAAATCCGGTTGAAGTCC ACTCTATCTACCAATAGTGGGTATGGGAAAAGAGAGGTCCACAATAATTG GTCTGCGAGGCTACTTGAATAGGATGCACCCGTTGCTCAAGCTACCTTGA CAACTGCTGGCTCAGTCTCCGTGGACTCTCGGTGGTAAACGCGAT
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Coding sequence (CDS) from alignment at H-elongata_contig17746:954..5948+

>mRNA_H-elongata_contig17746.4666.1 ID=mRNA_H-elongata_contig17746.4666.1|Name=mRNA_H-elongata_contig17746.4666.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1488bp|location=Sequence derived from alignment at H-elongata_contig17746:954..5948+ (Himanthalia elongata Himel1 dioecious)
ATGTTATTGAGGAAAGCGTTTCCCGATCACGGCCCTTCTCCCAGCGGATA
CACCATGATGGATATGGGTTCTTCATACGGCCACCTCGCACGGAAAGTCG
CCGAAAGCTACGGGTGCAGGATGTTATTGAGGAAAGCGTTTCCCGATCAC
GGCCCTTCTCCCAGCGGATACACCATGATGGATATGGGTTCTTCATACGG
CCACCTCGCACGGAAAGTCGCCGAAAGCTACGGGTGCAGGGTGGTGTGCA
TCGAACTGTCCGTCGCGGCGAATATGGAGAATTTAAAGCTCACCGCTGCT
GCTGGTCTCTCGGAAAAGGTCATCATTCCCGGCGAAAGGTGGTGTGCATC
GAACTGTCCGTCGCGGCGAATATGGAGAATTTAAAGCTCACCGCTGCTGC
TGGTCTCTCGGAAAAGGTCATCATTCCCGGCGAAAGGTCCTACTTTGATA
CCCAAATGCCCGCTTCTAGTATGGATATTGTCGTATCCCAAGACGCTTTT
ATGCACGCTAGCACGGAGCACCACAAGGCGATCAAGGAAGCTGCTCGAGT
GCTCAAGCCTGGTGGTATCTTCGTTTTCAGCGACCTAATGAGTTCGGACA
CCACCGATAAAACCAAGCTCGTCGAGGTCCTACTTTGATACCCAAATGCC
CGCTTCTAGTATGGATATTGTCGTATCCCAAGACGCTTTTATGCACGCTA
GCACGGAGCACCACAAGGCGATCAAGGAAGCTGCTCGAGTGCTCAAGCCT
GGTGGTATCTTCGTTTTCAGCGACCTAATGAGTTCGGACACCACCGATAA
AACCAAGCTCGTCGAGATCTACAAGAACATCGAAATCGTCGGGCTGGCCA
ACCCTGGGTCGTATAAACGCTGGGGCGAGGAGTTTGGCCTGGAATTTGTC
GAGTACGACGAATACGCCTCGAACGTCGCCACACACTACGCCTCTATCTA
CAAGAACATCGAAATCGTCGGGCTGGCCAACCCTGGGTCGTATAAACGCT
GGGGCGAGGAGTTTGGCCTGGAATTTGTCGAGTACGACGAATACGCCTCG
AACGTCGCCACACACTACGCCTCTCTCGCGGAGGTGATAAAAGATGTGCG
CGGAAGTATGGCGGGCGTGGAGTCCCGCTACCTTGATTGGATGACAGTGC
GGTACAGCGCCTGCGCGAACGCTGCCAAACATGGCCTATTGACGAGCGGG
CTGATGGTCTTCAAGAAGAAGGCCGTGAGTCTTCACTGTGCGACTGTAGA
ATGCTCGCGGAGGTGATAAAAGATGTGCGCGGAAGTATGGCGGGCGTGGA
GTCCCGCTACCTTGATTGGATGACAGTGCGGTACAGCGCCTGCGCGAACG
CTGCCAAACATGGCCTATTGACGAGCGGGCTGATGGTCTTCAAGAAGAAG
GCCGTGAGTCTTCACTGTGCGACTGTAGAATGGACCATAAATGATCCTTC
GCTGGCGTAGGACCATAAATGATCCTTCGCTGGCGTAG
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