mRNA_H-elongata_contig1774.4663.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: D7FN07_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN07_ECTSI) HSP 1 Score: 108 bits (270), Expect = 6.770e-26 Identity = 57/87 (65.52%), Postives = 64/87 (73.56%), Query Frame = 1
Query: 1 IGTSSSQWRK--NYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
IGTSS+QW N++D PD +GI VHDN I T GNEGI VKEG V TLIE NE+YMQ D SGGI SR D SIIR N+I+D DGAG
Sbjct: 31 IGTSSTQWDDGDNWSDGPDVCQGITVHDNFIRTKGNEGIEVKEGTVETLIEGNEVYMQYDAESGGIGSRGDRSIIRYNHIEDTDGAG 117
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: D7G5Z6_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Z6_ECTSI) HSP 1 Score: 105 bits (262), Expect = 1.140e-25 Identity = 56/87 (64.37%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 1 IGTSSSQWRK--NYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
IGTSS+QW N++D PD +GI V DN I T GNEGI VKEG V TLIE NE+YMQ D SGGI SR D SIIR N+I+D DGAG
Sbjct: 9 IGTSSTQWDDGDNWSDGPDVCQGITVRDNFIRTKGNEGIEVKEGTVETLIEGNEVYMQYDAESGGIGSRGDRSIIRYNHIEDTDGAG 95
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: D7FN04_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN04_ECTSI) HSP 1 Score: 105 bits (262), Expect = 6.620e-25 Identity = 56/87 (64.37%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 1 IGTSSSQWRK--NYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
IGTSS+QW N++D PD +GI V DN I T GNEGI VKEG V TLIE NE+YMQ D SGGI SR D SIIR N+I+D DGAG
Sbjct: 9 IGTSSTQWDDGDNWSDGPDVCQGITVRDNFIRTKGNEGIEVKEGTVETLIEGNEVYMQYDAESGGIGSRGDRSIIRYNHIEDTDGAG 95
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI) HSP 1 Score: 103 bits (258), Expect = 4.470e-24 Identity = 55/87 (63.22%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 1 IGTSSSQWRK--NYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
+GTSSSQW N++D PD G + DN I T GNEGI+VKEG V TLIE NE+YMQ D+ SGGI SR D SIIR NYI+D DGAG
Sbjct: 33 VGTSSSQWDNDNNWDDVPDVCMGNIIRDNYIRTRGNEGIDVKEGTVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNYIEDTDGAG 119
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.660e-23 Identity = 54/87 (62.07%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 1 IGTSSSQWRK--NYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
+GTSSSQW N++D PD G + DN I T GNEGI+VKEG V TLIE NE+YMQ D+ SGGI SR D SIIR N+I+D DGAG
Sbjct: 215 VGTSSSQWDNDNNWDDVPDACMGNIIRDNYIRTRGNEGIDVKEGSVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNHIEDTDGAG 301
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: A0A6H5L8H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H5_9PHAE) HSP 1 Score: 100 bits (250), Expect = 5.750e-23 Identity = 53/87 (60.92%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 1 IGTSSSQWRK--NYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
+GTSS+QW N++D PD G + DN I T GNEGI+VKEG V TLIE NE+YMQ D+ SGGI SR D SIIR N+I+D DGAG
Sbjct: 216 VGTSSNQWDSDNNWDDVPDVCMGNIIRDNYIRTRGNEGIDVKEGSVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNHIEDTDGAG 302
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: A0A6H5L3G3_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G3_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 7.890e-23 Identity = 53/87 (60.92%), Postives = 62/87 (71.26%), Query Frame = 1
Query: 1 IGTSSSQWR--KNYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
+GTSS QW KN++D PD G + N I T GNEGI+VKEG V TLIE NE+YMQ D+ SGGI SR D SIIR N+I+D DGAG
Sbjct: 210 VGTSSKQWDSDKNWDDVPDVCMGNIIRGNYIRTRGNEGIDVKEGTVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNHIEDTDGAG 296
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: D7FIS4_ECTSI (Putative nosD copper-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS4_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 1.460e-21 Identity = 52/85 (61.18%), Postives = 59/85 (69.41%), Query Frame = 1
Query: 1 IGTSSSQWRKNYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
+GTSS QW D PD G + DN I T GNEGI+VKEG V TLIE NE++MQ D+ SGGI SR D SIIR N+IQD DGAG
Sbjct: 160 VGTSSDQWE----DGPDVCMGNIIRDNYIRTRGNEGIDVKEGSVDTLIELNEVHMQYDKESGGIGSRGDRSIIRYNHIQDTDGAG 240
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: A0A6H5K4I7_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I7_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 8.760e-16 Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 1
Query: 97 GNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
GNEGI VKEG V TLIE NE++MQ DE SGGI SR D SIIR N+IQD DGAG
Sbjct: 15 GNEGIEVKEGSVDTLIEYNEVHMQYDEESGGIGSRGDRSIIRYNHIQDTDGAG 67
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: A0A0G0AZ49_9BACT (Secreted protein n=1 Tax=Parcubacteria group bacterium GW2011_GWC2_32_10 TaxID=1618918 RepID=A0A0G0AZ49_9BACT) HSP 1 Score: 77.8 bits (190), Expect = 7.350e-15 Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 1 IGTSSSQWRKNYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
IGT+ Q KN + D+S ++H+N I TNGNEG+++KEG ++E N I QKD SGG+DSR D +I R N + ++ GAG
Sbjct: 224 IGTAPEQLSKNPTLDIDKSNNNYIHNNSIQTNGNEGVDIKEGSTGNIVEYNIIRGQKDSESGGLDSRGDSNIFRYNDVAESLGAG 308 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1774.4663.1 >prot_H-elongata_contig1774.4663.1 ID=prot_H-elongata_contig1774.4663.1|Name=mRNA_H-elongata_contig1774.4663.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp IGTSSSQWRKNYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENback to top mRNA from alignment at H-elongata_contig1774:12428..13285+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1774.4663.1 ID=mRNA_H-elongata_contig1774.4663.1|Name=mRNA_H-elongata_contig1774.4663.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=858bp|location=Sequence derived from alignment at H-elongata_contig1774:12428..13285+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1774:12428..13285+ >mRNA_H-elongata_contig1774.4663.1 ID=mRNA_H-elongata_contig1774.4663.1|Name=mRNA_H-elongata_contig1774.4663.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig1774:12428..13285+ (Himanthalia elongata Himel1 dioecious)back to top |