mRNA_H-elongata_contig177356.4661.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177356.4661.1
Unique NamemRNA_H-elongata_contig177356.4661.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig177356.4661.1 vs. uniprot
Match: A0A448ZNY4_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNY4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.130e-12
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   19 GKLVPDGVIIDIVRNRLEEDDCQKNGWLLDGFPRTRAQV 135
            GKLVPD VII I+R+RLEEDDC+  GWLLDGFPRT AQ 
Sbjct:  137 GKLVPDEVIIGIIRDRLEEDDCKTQGWLLDGFPRTAAQA 175
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BLAST of mRNA_H-elongata_contig177356.4661.1 vs. uniprot
Match: A0A7S0KAH2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KAH2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.500e-12
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   19 GKLVPDGVIIDIVRNRLEEDDCQKNGWLLDGFPRTRAQV 135
            GKLVPD VII IV++RL + DC+KNGWLLDGFPRT AQ 
Sbjct:  154 GKLVPDEVIIGIVKDRLAQSDCKKNGWLLDGFPRTEAQA 192
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BLAST of mRNA_H-elongata_contig177356.4661.1 vs. uniprot
Match: D7FQE8_ECTSI (Adenylate kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQE8_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.660e-12
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   16 KGKLVPDGVIIDIVRNRLEEDDCQKNGWLLDGFPRTRAQV 135
            +GKLVPD VII IV++RL EDDC+  GWLLDGFPRTRAQ 
Sbjct:  173 EGKLVPDEVIIGIVKDRLNEDDCKTQGWLLDGFPRTRAQA 212
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BLAST of mRNA_H-elongata_contig177356.4661.1 vs. uniprot
Match: A0A7R9YDB8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDB8_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.010e-12
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   19 GKLVPDGVIIDIVRNRLEEDDCQKNGWLLDGFPRTRAQV 135
            G+LVPD VII I+  RL +DDC K GWLLDGFPRTRAQ 
Sbjct:   61 GQLVPDEVIIGIINERLRQDDCVKQGWLLDGFPRTRAQA 99
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BLAST of mRNA_H-elongata_contig177356.4661.1 vs. uniprot
Match: A0A7R9ZR47_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZR47_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.560e-12
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   19 GKLVPDGVIIDIVRNRLEEDDCQKNGWLLDGFPRTRAQV 135
            GKLVPD VII +V++RL E DCQ NGWLLDGFPRT+AQ 
Sbjct:  167 GKLVPDDVIIGVVKDRLAESDCQTNGWLLDGFPRTQAQA 205
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BLAST of mRNA_H-elongata_contig177356.4661.1 vs. uniprot
Match: A0A7S4AR35_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AR35_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.190e-12
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   19 GKLVPDGVIIDIVRNRLEEDDCQKNGWLLDGFPRTRAQV 135
            GKLVPD VII I+R+RLEE+DC+  GWLLDGFPRT AQ 
Sbjct:  138 GKLVPDEVIIGIIRDRLEEEDCKTQGWLLDGFPRTAAQA 176
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BLAST of mRNA_H-elongata_contig177356.4661.1 vs. uniprot
Match: A0A7S0UEG1_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UEG1_HEMAN)

HSP 1 Score: 64.7 bits (156), Expect = 4.910e-12
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    7 CSSKGKLVPDGVIIDIVRNRLEEDDCQKNGWLLDGFPRTRAQV 135
            C   G LVPD +II+IV++RL ++DCQ  GWLLDGFPRT AQ 
Sbjct:   56 CMDAGALVPDDLIINIVKSRLAQEDCQTKGWLLDGFPRTGAQA 98
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BLAST of mRNA_H-elongata_contig177356.4661.1 vs. uniprot
Match: A0A7S3Y521_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y521_HETAK)

HSP 1 Score: 67.0 bits (162), Expect = 5.610e-12
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   19 GKLVPDGVIIDIVRNRLEEDDCQKNGWLLDGFPRTRAQV 135
            G+LVPD VII IV++RL E+DCQ  GWLLDGFPRTRAQ 
Sbjct:  140 GRLVPDEVIIGIVKDRLAEEDCQTQGWLLDGFPRTRAQA 178
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BLAST of mRNA_H-elongata_contig177356.4661.1 vs. uniprot
Match: A0A7S0CMU4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CMU4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.540e-12
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   19 GKLVPDGVIIDIVRNRLEEDDCQKNGWLLDGFPRTRAQV 135
            GKLVPD VII +V++RL E DC + GWLLDGFPRTRAQ 
Sbjct:   55 GKLVPDEVIIGVVKDRLNESDCAEKGWLLDGFPRTRAQA 93
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BLAST of mRNA_H-elongata_contig177356.4661.1 vs. uniprot
Match: B7FYD8_PHATC (Kinase adenylate kinase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYD8_PHATC)

HSP 1 Score: 67.0 bits (162), Expect = 6.570e-12
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   19 GKLVPDGVIIDIVRNRLEEDDCQKNGWLLDGFPRTRAQV 135
            GKLVPD VII +V+NRL E DCQ  GWLLDGFPRT+AQ 
Sbjct:  159 GKLVPDDVIIGVVKNRLIEKDCQSQGWLLDGFPRTQAQA 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177356.4661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A448ZNY4_9STRA1.130e-1276.92Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S0KAH2_9STRA1.500e-1274.36Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
D7FQE8_ECTSI1.660e-1275.00Adenylate kinase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A7R9YDB8_9STRA2.010e-1271.79Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7R9ZR47_9STRA2.560e-1274.36Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S4AR35_9STRA4.190e-1274.36Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S0UEG1_HEMAN4.910e-1262.79Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S3Y521_HETAK5.610e-1274.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0CMU4_9STRA6.540e-1271.79Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B7FYD8_PHATC6.570e-1274.36Kinase adenylate kinase n=2 Tax=Phaeodactylum tric... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177356contigH-elongata_contig177356:1001..1135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue8.8e-10
Seed eggNOG ortholog2880.D7FQE8
KEGG rclassRC00002
KEGG koko:K00939
KEGG ReactionR00127,R01547,R11319
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG ModuleM00049
EggNOG free text desc.adenylate kinase activity
EggNOG OGsCOG0563@1,KOG3078@2759
EC2.7.4.3
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930026.056919-CDS-H-elongata_contig177356:1000..11351622930026.056919-CDS-H-elongata_contig177356:1000..1135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177356 1001..1135 +
1691679251.6118183-CDS-H-elongata_contig177356:1000..11351691679251.6118183-CDS-H-elongata_contig177356:1000..1135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177356 1001..1135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177356.4661.1prot_H-elongata_contig177356.4661.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177356 1001..1135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177356.4661.1

>prot_H-elongata_contig177356.4661.1 ID=prot_H-elongata_contig177356.4661.1|Name=mRNA_H-elongata_contig177356.4661.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
SSCSSKGKLVPDGVIIDIVRNRLEEDDCQKNGWLLDGFPRTRAQV
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mRNA from alignment at H-elongata_contig177356:1001..1135+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177356.4661.1 ID=mRNA_H-elongata_contig177356.4661.1|Name=mRNA_H-elongata_contig177356.4661.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig177356:1001..1135+ (Himanthalia elongata Himel1 dioecious)
TCGTCCTGCTCGTCGAAGGGAAAGCTCGTGCCTGACGGCGTTATCATTGA
CATCGTCCGCAACCGTCTCGAGGAGGACGACTGCCAGAAGAATGGTTGGT
TGCTGGACGGCTTCCCCCGCACTCGTGCCCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig177356:1001..1135+

>mRNA_H-elongata_contig177356.4661.1 ID=mRNA_H-elongata_contig177356.4661.1|Name=mRNA_H-elongata_contig177356.4661.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig177356:1001..1135+ (Himanthalia elongata Himel1 dioecious)
TCGTCCTGCTCGTCGAAGGGAAAGCTCGTGCCTGACGGCGTTATCATTGA
CATCGTCCGCAACCGTCTCGAGGAGGACGACTGCCAGAAGAATGGTTGGT
TGCTGGACGGCTTCCCCCGCACTCGTGCCCAGGTGTCGTCCTGCTCGTCG
AAGGGAAAGCTCGTGCCTGACGGCGTTATCATTGACATCGTCCGCAACCG
TCTCGAGGAGGACGACTGCCAGAAGAATGGTTGGTTGCTGGACGGCTTCC
CCCGCACTCGTGCCCAGGTG
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