mRNA_H-elongata_contig177292.4656.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177292.4656.1
Unique NamemRNA_H-elongata_contig177292.4656.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177292.4656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177292contigH-elongata_contig177292:582..1213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size576
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177292.4656.1prot_H-elongata_contig177292.4656.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177292 848..1194 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930025.5783699-UTR-H-elongata_contig177292:581..8471622930025.5783699-UTR-H-elongata_contig177292:581..847Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig177292 582..847 -
1691679251.4030125-UTR-H-elongata_contig177292:581..8471691679251.4030125-UTR-H-elongata_contig177292:581..847Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig177292 582..847 -
1622930025.6231856-UTR-H-elongata_contig177292:1194..12131622930025.6231856-UTR-H-elongata_contig177292:1194..1213Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig177292 1195..1213 -
1691679251.4279525-UTR-H-elongata_contig177292:1194..12131691679251.4279525-UTR-H-elongata_contig177292:1194..1213Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig177292 1195..1213 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930025.5944405-CDS-H-elongata_contig177292:847..9051622930025.5944405-CDS-H-elongata_contig177292:847..905Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177292 848..905 -
1691679251.4106243-CDS-H-elongata_contig177292:847..9051691679251.4106243-CDS-H-elongata_contig177292:847..905Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177292 848..905 -
1622930025.6093485-CDS-H-elongata_contig177292:961..11941622930025.6093485-CDS-H-elongata_contig177292:961..1194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177292 962..1194 -
1691679251.4183116-CDS-H-elongata_contig177292:961..11941691679251.4183116-CDS-H-elongata_contig177292:961..1194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177292 962..1194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177292.4656.1

>prot_H-elongata_contig177292.4656.1 ID=prot_H-elongata_contig177292.4656.1|Name=mRNA_H-elongata_contig177292.4656.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MRFSTVPQSPIPFLKPGYVKTKRQDKLKPKAFPCFFIGPSANRPRDTHEV
LLNSGSVVHSRNVTWARVPSVPVSAEKLGGRSFGFGRIGEVHPRVK*
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mRNA from alignment at H-elongata_contig177292:582..1213-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177292.4656.1 ID=mRNA_H-elongata_contig177292.4656.1|Name=mRNA_H-elongata_contig177292.4656.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=632bp|location=Sequence derived from alignment at H-elongata_contig177292:582..1213- (Himanthalia elongata Himel1 dioecious)
GGATAAATCGCCGTTTGAAATGCGTTTTAGTACGGTACCGCAGAGCCCGA
TCCCTTTCCTCAAGCCAGGGTACGTGAAAACCAAGCGCCAGGATAAGCTG
AAGCCTAAGGCGTTTCCTTGTTTTTTTATTGGCCCTTCGGCAAACCGCCC
CCGTGATACCCATGAGGTACTTCTGAATTCAGGAAGTGTTGTTCACTCTC
GCAACGTCACATGGGCGCGAGTACCTTCCGTCCCTGTTTCCGCAGAAAAA
CTGCTTACTGTGCCTGTTGCAGGGGGGGGAAGAAAATTGGATCGAAGTCG
CGATGGAGTGGTGGAAGAAGTTTTGGATTTGGGAGGATCGGAGAAGTACA
CCCGCGAGTCAAGTGAGTCCACCGGCGGACGACCGGGTACCACTGCAAGC
CTGGTTGTTCCGACTCCTGCGGCTGTTCCATGCGGAAGGGACGCACCGGC
GGGCGGGAGAGGTACCGCCGCGGCTACTTCGTTAAGAGGTACCGCCATGG
AGGAGGTTCCGGGTTCGTCCGTGCATAACAGCGCGGGTACTCCGGGAAGG
GATACTATGTCTACACCCTCTGCGATATCGGCAGGGGTCAACGCGTCTGG
GGGCATAGTCAGCCCCGGAGCGTCAGTTAAGC
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Coding sequence (CDS) from alignment at H-elongata_contig177292:582..1213-

>mRNA_H-elongata_contig177292.4656.1 ID=mRNA_H-elongata_contig177292.4656.1|Name=mRNA_H-elongata_contig177292.4656.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig177292:582..1213- (Himanthalia elongata Himel1 dioecious)
ATGCGTTTTAGTACGGTACCGCAGAGCCCGATCCCTTTCCTCAAGCCAGG
GTACGTGAAAACCAAGCGCCAGGATAAGCTGAAGCCTAAGGCGTTTCCTT
GTTTTTTTATTGGCCCTTCGGCAAACCGCCCCCGTGATACCCATGAGGTA
CTTCTGAATTCAGGAAGTGTTGTTCACTCTCGCAACGTCACATGGGCGCG
AGTACCTTCCGTCCCTGTTTCCGCAGAAAAACTATGCGTTTTAGTACGGT
ACCGCAGAGCCCGATCCCTTTCCTCAAGCCAGGGTACGTGAAAACCAAGC
GCCAGGATAAGCTGAAGCCTAAGGCGTTTCCTTGTTTTTTTATTGGCCCT
TCGGCAAACCGCCCCCGTGATACCCATGAGGTACTTCTGAATTCAGGAAG
TGTTGTTCACTCTCGCAACGTCACATGGGCGCGAGTACCTTCCGTCCCTG
TTTCCGCAGAAAAACTTGGTGGAAGAAGTTTTGGATTTGGGAGGATCGGA
GAAGTACACCCGCGAGTCAAGTGATGGTGGAAGAAGTTTTGGATTTGGGA
GGATCGGAGAAGTACACCCGCGAGTCAAGTGA
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