mRNA_H-elongata_contig177242.4653.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177242.4653.1
Unique NamemRNA_H-elongata_contig177242.4653.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: D7G1U6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1U6_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 3.010e-16
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    4 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 111
            +GKTAEEIR+TFNIVNDFTPEEEAQVREENKWCEDA
Sbjct:  148 KGKTAEEIRKTFNIVNDFTPEEEAQVREENKWCEDA 183
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BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: F0XYF9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYF9_AURAN)

HSP 1 Score: 72.8 bits (177), Expect = 3.890e-15
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    4 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 111
            +GKT EEIR+TFNIVNDFTPEEEAQVREENKWCE+A
Sbjct:  122 KGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEEA 157
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BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: A0A482SUX2_9ARCH (Skp1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUX2_9ARCH)

HSP 1 Score: 70.5 bits (171), Expect = 5.230e-15
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    4 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 111
            +GK+ EEIR+ FNIVNDFTPEEEAQVREENKWCEDA
Sbjct:   48 KGKSPEEIRKQFNIVNDFTPEEEAQVREENKWCEDA 83
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BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: A0A836CN28_9STRA (Skp1 family, dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN28_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.500e-15
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    4 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 111
            +GKT EEIR+TFNIVNDFTPEEEAQVREENKWCE+A
Sbjct:  147 KGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEEA 182
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BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: A0A7S2SQM9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQM9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.500e-15
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    4 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 111
            +GKT EEIR+TFNIVNDFTPEEEAQVREENKWCE+A
Sbjct:  147 KGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEEA 182
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BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: A0A7S2S0P7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S0P7_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.510e-15
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    4 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 111
            +GKT EEIRRTFNIVNDF+PEEEAQVREENKWCE+A
Sbjct:  130 KGKTPEEIRRTFNIVNDFSPEEEAQVREENKWCEEA 165
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BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: A0A835Z9K0_9STRA (Skp1 family, dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9K0_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.160e-15
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    4 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 111
            +GKT EEIR+TFNIVNDFTPEEEAQVREENKWCE+A
Sbjct:  152 KGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEEA 187
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BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: A0A0G4EPG4_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EPG4_VITBC)

HSP 1 Score: 72.0 bits (175), Expect = 8.820e-15
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    4 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 111
            +GKT EEIR+ FNIVNDFTPEEEAQVREENKWCEDA
Sbjct:  128 KGKTPEEIRKQFNIVNDFTPEEEAQVREENKWCEDA 163
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BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: A0A7S2DNG6_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DNG6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.110e-14
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    4 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 111
            +GKT EEIR+TFNIVNDFTPEEEAQVREENKWCE+A
Sbjct:  177 KGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEEA 212
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BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Match: A0A6U0KEA3_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0KEA3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.220e-14
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    4 QGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA 111
            +GKT EEIRRTFNI NDF+PEEEAQVREENKWCE+A
Sbjct:   96 KGKTPEEIRRTFNIANDFSPEEEAQVREENKWCEEA 131
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177242.4653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1U6_ECTSI3.010e-1694.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F0XYF9_AURAN3.890e-1588.89Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A482SUX2_9ARCH5.230e-1586.11Skp1 domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A836CN28_9STRA6.500e-1588.89Skp1 family, dimerization domain-containing protei... [more]
A0A7S2SQM9_9STRA6.500e-1588.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2S0P7_9STRA6.510e-1588.89Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A835Z9K0_9STRA7.160e-1588.89Skp1 family, dimerization domain-containing protei... [more]
A0A0G4EPG4_VITBC8.820e-1588.89Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A7S2DNG6_9STRA1.110e-1488.89Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A6U0KEA3_9STRA1.220e-1486.11Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177242contigH-elongata_contig177242:972..1085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue2.7e-12
Seed eggNOG ortholog2880.D7G1U6
KEGG koko:K03094
KEGG Pathwayko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04341,map04350,map04710,map05168,map05200
KEGG ModuleM00379,M00380,M00381,M00382,M00387,M00407,M00411
EggNOG free text desc.modification-dependent protein catabolic process
EggNOG OGsCOG5201@1,KOG1724@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930025.4289262-CDS-H-elongata_contig177242:971..10851622930025.4289262-CDS-H-elongata_contig177242:971..1085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177242 972..1085 -
1691679251.3525183-CDS-H-elongata_contig177242:971..10851691679251.3525183-CDS-H-elongata_contig177242:971..1085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177242 972..1085 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177242.4653.1prot_H-elongata_contig177242.4653.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177242 972..1085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177242.4653.1

>prot_H-elongata_contig177242.4653.1 ID=prot_H-elongata_contig177242.4653.1|Name=mRNA_H-elongata_contig177242.4653.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
FQGKTAEEIRRTFNIVNDFTPEEEAQVREENKWCEDA*
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mRNA from alignment at H-elongata_contig177242:972..1085-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177242.4653.1 ID=mRNA_H-elongata_contig177242.4653.1|Name=mRNA_H-elongata_contig177242.4653.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig177242:972..1085- (Himanthalia elongata Himel1 dioecious)
TTTCAGGGAAAAACCGCGGAAGAGATTCGCAGAACATTCAACATTGTGAA
CGACTTTACACCCGAGGAGGAAGCACAAGTTCGCGAGGAGAACAAATGGT
GCGAGGATGCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig177242:972..1085-

>mRNA_H-elongata_contig177242.4653.1 ID=mRNA_H-elongata_contig177242.4653.1|Name=mRNA_H-elongata_contig177242.4653.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig177242:972..1085- (Himanthalia elongata Himel1 dioecious)
TTTCAGGGAAAAACCGCGGAAGAGATTCGCAGAACATTCAACATTGTGAA
CGACTTTACACCCGAGGAGGAAGCACAAGTTCGCGAGGAGAACAAATGGT
GCGAGGATGCATAATTTCAGGGAAAAACCGCGGAAGAGATTCGCAGAACA
TTCAACATTGTGAACGACTTTACACCCGAGGAGGAAGCACAAGTTCGCGA
GGAGAACAAATGGTGCGAGGATGCATAA
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