mRNA_H-elongata_contig177224.4652.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.730e-15 Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 1
Query: 64 WIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVECVGNIDVVFHGRSDEPITLCDVSHVPDLKFNIFSFNKVQQ 309
WIGDS ++ H T++ + VYN R P + + DG +L+ EC G++DVVFH R D +T+ D++ VPDL F++ S N +Q+
Sbjct: 16 WIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVIQE 97
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 1.770e-10 Identity = 35/104 (33.65%), Postives = 58/104 (55.77%), Query Frame = 1
Query: 13 FSLMAFAAQLQDARNDFWIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVECVGNIDVVFH-----GRSDEPITLCDVSHVPDLKFNIFSFNKVQQ 309
F+L A + R FW DSGA+ +++ +++++R P GK + +GT LRV+CVG +++ FH G D + + DV VP + FN+FS + Q+
Sbjct: 624 FALSAQNPLSRFGREKFW-ADSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSLHHTQR 726
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: A0A834U2Q9_9FABA (F-box protein interaction domain protein n=1 Tax=Senna tora TaxID=362788 RepID=A0A834U2Q9_9FABA) HSP 1 Score: 57.0 bits (136), Expect = 3.100e-7 Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1
Query: 55 NDFWIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVECVGNIDVVFHGRSDEPITLCDVSHVPDLKFNIFSFNKVQQ 309
ND WI DSGAS HMT NAS +++ P +V DGT +V +G++ + + ITL +V HVP L N+ S +K+ Q
Sbjct: 92 NDSWIVDSGASDHMTGNAS-LFSTLGPCKTSLQVKIADGTMAKVLGIGSVKI------SDTITLLNVLHVPTLACNLLSISKLTQ 169
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: UPI00053F6F2D (myosin-G heavy chain-like n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F6F2D) HSP 1 Score: 56.2 bits (134), Expect = 5.130e-7 Identity = 34/103 (33.01%), Postives = 54/103 (52.43%), Query Frame = 1
Query: 1 ESVNFSLMAFAAQLQDARNDFWIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVECVGNIDVVFHGRSDEPITLCDVSHVPDLKFNIFSFNKVQQ 309
+SV +L A + +A + W DSG++ HMT K+ ++ P G ++ +GT L ++ VG + + R P+ L V HVP LK N+ S NK+ Q
Sbjct: 179 DSVTRALAALSVG-GEANDSVWYPDSGSATHMTPQDGKLSSI-LPYTGSSSIIVGNGTSLPIKSVGTLTLKTSSR---PLILSSVCHVPSLKHNLLSVNKLCQ 276
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: A0A834T3C8_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834T3C8_9FABA) HSP 1 Score: 53.1 bits (126), Expect = 6.230e-6 Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 1
Query: 64 WIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVECVGNIDVVFHGRSDEPITLCDVSHVPDLKFNIFSFNKVQQ 309
WI DSGAS HMT NAS +++ P +V DGT +V +G+I + +TL +V +VP L N+ S +K+ Q
Sbjct: 74 WIVDSGASDHMTGNAS-LFSTLAPCASSLQVKIADGTMAKVSAIGSIKI------STTLTLMNVLYVPALACNLLSISKLTQ 148
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: A0A7M7R4X9_NASVI (Uncharacterized protein n=1 Tax=Nasonia vitripennis TaxID=7425 RepID=A0A7M7R4X9_NASVI) HSP 1 Score: 52.4 bits (124), Expect = 6.480e-6 Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 1
Query: 25 AFAA-QLQDARNDFWIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVEC-VGNIDVV-FHGRSDEPITLCDVSHVPDLKFNIFSFN 297
AFA+ Q ++ + W DSGAS HMT++ N PF + + L C +G I+V+ F+G+S L +V +VPDLK+N+FSFN
Sbjct: 83 AFASIQNSNSHTNLWYKDSGASSHMTHHKDWFLNYE--PFKRLTWVHIGDVSLLEACGLGEINVLSFNGKSWNLSHLSNVVYVPDLKYNLFSFN 174
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: A0A835CFI5_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A835CFI5_9FABA) HSP 1 Score: 53.1 bits (126), Expect = 6.810e-6 Identity = 33/97 (34.02%), Postives = 52/97 (53.61%), Query Frame = 1
Query: 10 NFSLMAFAAQLQDARNDFWIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVECVGNIDVVFHGRSDEPITLCDVSHVPDLKFNIFSFNK 300
N S+ A A + + W DSGAS H+TN+AS + VR P G+ V T +GT L ++ VG ++ + + + L + HVP + N+ S +K
Sbjct: 292 NQSVEALLANPETLYDASWYPDSGASSHLTNDASNL-QVRQPYNGQELVHTANGTGLPIQSVGYSNI--SSSNSQILHLSQLYHVPSVSKNLISVSK 385
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: A0A834WYN7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WYN7_9FABA) HSP 1 Score: 52.8 bits (125), Expect = 9.100e-6 Identity = 34/98 (34.69%), Postives = 54/98 (55.10%), Query Frame = 1
Query: 16 SLMAFAAQLQDARNDFWIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVECVGNIDVVFHGRSDEPITLCDVSHVPDLKFNIFSFNKVQQ 309
+L+A L DA W DSGAS H+TN+AS +++ P G +V +GT L + VG ++ H S + ++L ++ HVP + N+ S +K Q
Sbjct: 309 ALVAAPETLYDAA---WYPDSGASHHITNDASNLHS-HQPYTGSEQVHAANGTGLVIHNVGQSEI--HTNSSKILSLKNLFHVPSVTKNLLSVSKCAQ 400
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: A0A834SY91_9FABA (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834SY91_9FABA) HSP 1 Score: 52.8 bits (125), Expect = 9.200e-6 Identity = 31/83 (37.35%), Postives = 47/83 (56.63%), Query Frame = 1
Query: 55 NDFWIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVECVGNIDVVFHGRSDEPITLCDVSHVPDLKFNIFSFNKV 303
ND WI DSGAS HMT NAS +++ P V +GT ++V +G++ + + +TL +V HVP L N+ S +K+
Sbjct: 358 NDSWIIDSGASDHMTGNAS-LFSDLAPCTTSLLVKIANGTMVKVSSIGSVKITNN------LTLLNVLHVPTLTCNLLSVSKL 433
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: A0A8J2WLN9_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2WLN9_9CRUS) HSP 1 Score: 52.4 bits (124), Expect = 1.220e-5 Identity = 27/76 (35.53%), Postives = 37/76 (48.68%), Query Frame = 1
Query: 64 WIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVECVGNIDVVFHGRSDEPITLCDVSHVPDLKFNIFS 291
W DSGA+ HMT+ S ++N + G V G L V G + V+ G + + V HVPDL N+FS
Sbjct: 345 WFADSGATSHMTDQRSLIFNYKPVTPGSWMVTGIGGATLPVHGQGQVSVLTEGEVESERIISPVLHVPDLGTNLFS 420 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig177224.4652.1 >prot_H-elongata_contig177224.4652.1 ID=prot_H-elongata_contig177224.4652.1|Name=mRNA_H-elongata_contig177224.4652.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp MAFAAQLQDARNDFWIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGback to top mRNA from alignment at H-elongata_contig177224:780..1088- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig177224.4652.1 ID=mRNA_H-elongata_contig177224.4652.1|Name=mRNA_H-elongata_contig177224.4652.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at H-elongata_contig177224:780..1088- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig177224:780..1088- >mRNA_H-elongata_contig177224.4652.1 ID=mRNA_H-elongata_contig177224.4652.1|Name=mRNA_H-elongata_contig177224.4652.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig177224:780..1088- (Himanthalia elongata Himel1 dioecious)back to top |