mRNA_H-elongata_contig177224.4652.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177224.4652.1
Unique NamemRNA_H-elongata_contig177224.4652.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.730e-15
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   64 WIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVECVGNIDVVFHGRSDEPITLCDVSHVPDLKFNIFSFNKVQQ 309
            WIGDS ++ H T++ + VYN R P   +  +   DG +L+ EC G++DVVFH R D  +T+ D++ VPDL F++ S N +Q+
Sbjct:   16 WIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVIQE 97          
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.770e-10
Identity = 35/104 (33.65%), Postives = 58/104 (55.77%), Query Frame = 1
Query:   13 FSLMAFAAQLQDARNDFWIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVECVGNIDVVFH-----GRSDEPITLCDVSHVPDLKFNIFSFNKVQQ 309
            F+L A     +  R  FW  DSGA+    +++ +++++R  P GK  +   +GT LRV+CVG +++ FH     G  D  + + DV  VP + FN+FS +  Q+
Sbjct:  624 FALSAQNPLSRFGREKFW-ADSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSLHHTQR 726          
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: A0A834U2Q9_9FABA (F-box protein interaction domain protein n=1 Tax=Senna tora TaxID=362788 RepID=A0A834U2Q9_9FABA)

HSP 1 Score: 57.0 bits (136), Expect = 3.100e-7
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1
Query:   55 NDFWIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVECVGNIDVVFHGRSDEPITLCDVSHVPDLKFNIFSFNKVQQ 309
            ND WI DSGAS HMT NAS +++   P     +V   DGT  +V  +G++ +       + ITL +V HVP L  N+ S +K+ Q
Sbjct:   92 NDSWIVDSGASDHMTGNAS-LFSTLGPCKTSLQVKIADGTMAKVLGIGSVKI------SDTITLLNVLHVPTLACNLLSISKLTQ 169          
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: UPI00053F6F2D (myosin-G heavy chain-like n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F6F2D)

HSP 1 Score: 56.2 bits (134), Expect = 5.130e-7
Identity = 34/103 (33.01%), Postives = 54/103 (52.43%), Query Frame = 1
Query:    1 ESVNFSLMAFAAQLQDARNDFWIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVECVGNIDVVFHGRSDEPITLCDVSHVPDLKFNIFSFNKVQQ 309
            +SV  +L A +    +A +  W  DSG++ HMT    K+ ++  P  G   ++  +GT L ++ VG + +    R   P+ L  V HVP LK N+ S NK+ Q
Sbjct:  179 DSVTRALAALSVG-GEANDSVWYPDSGSATHMTPQDGKLSSI-LPYTGSSSIIVGNGTSLPIKSVGTLTLKTSSR---PLILSSVCHVPSLKHNLLSVNKLCQ 276          
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: A0A834T3C8_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834T3C8_9FABA)

HSP 1 Score: 53.1 bits (126), Expect = 6.230e-6
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 1
Query:   64 WIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVECVGNIDVVFHGRSDEPITLCDVSHVPDLKFNIFSFNKVQQ 309
            WI DSGAS HMT NAS +++   P     +V   DGT  +V  +G+I +         +TL +V +VP L  N+ S +K+ Q
Sbjct:   74 WIVDSGASDHMTGNAS-LFSTLAPCASSLQVKIADGTMAKVSAIGSIKI------STTLTLMNVLYVPALACNLLSISKLTQ 148          
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: A0A7M7R4X9_NASVI (Uncharacterized protein n=1 Tax=Nasonia vitripennis TaxID=7425 RepID=A0A7M7R4X9_NASVI)

HSP 1 Score: 52.4 bits (124), Expect = 6.480e-6
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   25 AFAA-QLQDARNDFWIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVEC-VGNIDVV-FHGRSDEPITLCDVSHVPDLKFNIFSFN 297
            AFA+ Q  ++  + W  DSGAS HMT++     N    PF +   +      L   C +G I+V+ F+G+S     L +V +VPDLK+N+FSFN
Sbjct:   83 AFASIQNSNSHTNLWYKDSGASSHMTHHKDWFLNYE--PFKRLTWVHIGDVSLLEACGLGEINVLSFNGKSWNLSHLSNVVYVPDLKYNLFSFN 174          
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: A0A835CFI5_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A835CFI5_9FABA)

HSP 1 Score: 53.1 bits (126), Expect = 6.810e-6
Identity = 33/97 (34.02%), Postives = 52/97 (53.61%), Query Frame = 1
Query:   10 NFSLMAFAAQLQDARNDFWIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVECVGNIDVVFHGRSDEPITLCDVSHVPDLKFNIFSFNK 300
            N S+ A  A  +   +  W  DSGAS H+TN+AS +  VR P  G+  V T +GT L ++ VG  ++     + + + L  + HVP +  N+ S +K
Sbjct:  292 NQSVEALLANPETLYDASWYPDSGASSHLTNDASNL-QVRQPYNGQELVHTANGTGLPIQSVGYSNI--SSSNSQILHLSQLYHVPSVSKNLISVSK 385          
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: A0A834WYN7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WYN7_9FABA)

HSP 1 Score: 52.8 bits (125), Expect = 9.100e-6
Identity = 34/98 (34.69%), Postives = 54/98 (55.10%), Query Frame = 1
Query:   16 SLMAFAAQLQDARNDFWIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVECVGNIDVVFHGRSDEPITLCDVSHVPDLKFNIFSFNKVQQ 309
            +L+A    L DA    W  DSGAS H+TN+AS +++   P  G  +V   +GT L +  VG  ++  H  S + ++L ++ HVP +  N+ S +K  Q
Sbjct:  309 ALVAAPETLYDAA---WYPDSGASHHITNDASNLHS-HQPYTGSEQVHAANGTGLVIHNVGQSEI--HTNSSKILSLKNLFHVPSVTKNLLSVSKCAQ 400          
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: A0A834SY91_9FABA (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834SY91_9FABA)

HSP 1 Score: 52.8 bits (125), Expect = 9.200e-6
Identity = 31/83 (37.35%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   55 NDFWIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVECVGNIDVVFHGRSDEPITLCDVSHVPDLKFNIFSFNKV 303
            ND WI DSGAS HMT NAS +++   P      V   +GT ++V  +G++ +  +      +TL +V HVP L  N+ S +K+
Sbjct:  358 NDSWIIDSGASDHMTGNAS-LFSDLAPCTTSLLVKIANGTMVKVSSIGSVKITNN------LTLLNVLHVPTLTCNLLSVSKL 433          
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Match: A0A8J2WLN9_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2WLN9_9CRUS)

HSP 1 Score: 52.4 bits (124), Expect = 1.220e-5
Identity = 27/76 (35.53%), Postives = 37/76 (48.68%), Query Frame = 1
Query:   64 WIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDGTRLRVECVGNIDVVFHGRSDEPITLCDVSHVPDLKFNIFS 291
            W  DSGA+ HMT+  S ++N +    G   V    G  L V   G + V+  G  +    +  V HVPDL  N+FS
Sbjct:  345 WFADSGATSHMTDQRSLIFNYKPVTPGSWMVTGIGGATLPVHGQGQVSVLTEGEVESERIISPVLHVPDLGTNLFS 420          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177224.4652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE1.730e-1542.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3I1_9PHAE1.770e-1033.65Integrase catalytic domain-containing protein n=5 ... [more]
A0A834U2Q9_9FABA3.100e-740.00F-box protein interaction domain protein n=1 Tax=S... [more]
UPI00053F6F2D5.130e-733.01myosin-G heavy chain-like n=1 Tax=Beta vulgaris su... [more]
A0A834T3C8_9FABA6.230e-637.80Retrovirus-related Pol polyprotein from transposon... [more]
A0A7M7R4X9_NASVI6.480e-638.30Uncharacterized protein n=1 Tax=Nasonia vitripenni... [more]
A0A835CFI5_9FABA6.810e-634.02Retrovirus-related Pol polyprotein from transposon... [more]
A0A834WYN7_9FABA9.100e-634.69Retrovirus-related Pol polyprotein from transposon... [more]
A0A834SY91_9FABA9.200e-637.35Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J2WLN9_9CRUS1.220e-535.53Hypothetical protein n=1 Tax=Daphnia galeata TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177224contigH-elongata_contig177224:780..1088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930025.3726761-CDS-H-elongata_contig177224:779..10671622930025.3726761-CDS-H-elongata_contig177224:779..1067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177224 780..1067 -
1691679251.321708-CDS-H-elongata_contig177224:779..10671691679251.321708-CDS-H-elongata_contig177224:779..1067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177224 780..1067 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930025.3871298-UTR-H-elongata_contig177224:1067..10881622930025.3871298-UTR-H-elongata_contig177224:1067..1088Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig177224 1068..1088 -
1691679251.3333552-UTR-H-elongata_contig177224:1067..10881691679251.3333552-UTR-H-elongata_contig177224:1067..1088Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig177224 1068..1088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177224.4652.1prot_H-elongata_contig177224.4652.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177224 780..1067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177224.4652.1

>prot_H-elongata_contig177224.4652.1 ID=prot_H-elongata_contig177224.4652.1|Name=mRNA_H-elongata_contig177224.4652.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MAFAAQLQDARNDFWIGDSGASCHMTNNASKVYNVRTPPFGKHKVMTRDG
TRLRVECVGNIDVVFHGRSDEPITLCDVSHVPDLKFNIFSFNKVQQ
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mRNA from alignment at H-elongata_contig177224:780..1088-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177224.4652.1 ID=mRNA_H-elongata_contig177224.4652.1|Name=mRNA_H-elongata_contig177224.4652.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at H-elongata_contig177224:780..1088- (Himanthalia elongata Himel1 dioecious)
GAGTCTGTGAATTTTAGTCTTATGGCATTTGCAGCGCAATTGCAGGATGC TCGTAACGATTTTTGGATAGGTGACAGTGGCGCATCGTGTCACATGACAA ATAACGCATCCAAAGTGTATAATGTGAGGACTCCTCCTTTTGGTAAACAT AAAGTAATGACTAGGGATGGAACGAGATTAAGGGTAGAATGTGTCGGTAA CATCGACGTAGTTTTTCATGGGAGGAGCGATGAACCGATCACGTTATGCG ATGTATCGCACGTACCGGATTTGAAGTTCAATATTTTTTCGTTTAACAAG GTACAGCAA
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Coding sequence (CDS) from alignment at H-elongata_contig177224:780..1088-

>mRNA_H-elongata_contig177224.4652.1 ID=mRNA_H-elongata_contig177224.4652.1|Name=mRNA_H-elongata_contig177224.4652.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig177224:780..1088- (Himanthalia elongata Himel1 dioecious)
ATGGCATTTGCAGCGCAATTGCAGGATGCTCGTAACGATTTTTGGATAGG
TGACAGTGGCGCATCGTGTCACATGACAAATAACGCATCCAAAGTGTATA
ATGTGAGGACTCCTCCTTTTGGTAAACATAAAGTAATGACTAGGGATGGA
ACGAGATTAAGGGTAGAATGTGTCGGTAACATCGACGTAGTTTTTCATGG
GAGGAGCGATGAACCGATCACGTTATGCGATGTATCGCACGTACCGGATT
TGAAGTTCAATATTTTTTCGTTTAACAAGGTACAGCAAATGGCATTTGCA
GCGCAATTGCAGGATGCTCGTAACGATTTTTGGATAGGTGACAGTGGCGC
ATCGTGTCACATGACAAATAACGCATCCAAAGTGTATAATGTGAGGACTC
CTCCTTTTGGTAAACATAAAGTAATGACTAGGGATGGAACGAGATTAAGG
GTAGAATGTGTCGGTAACATCGACGTAGTTTTTCATGGGAGGAGCGATGA
ACCGATCACGTTATGCGATGTATCGCACGTACCGGATTTGAAGTTCAATA
TTTTTTCGTTTAACAAGGTACAGCAA
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