mRNA_H-elongata_contig17722.4650.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17722.4650.1
Unique NamemRNA_H-elongata_contig17722.4650.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: D8LBX4_ECTSI (Lipoxygenase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX4_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 7.960e-30
Identity = 54/90 (60.00%), Postives = 72/90 (80.00%), Query Frame = 1
Query:    1 FHTSGDKKAFLAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDKNERTFEDYLACLPGMEIATTQAILGNTLGSVFHTR 270
            ++T+ DKKA +AKV+ASWIY+ASTLHAAVNFPQ+  MSF P+ PG++YAPPP+DK ERTF++++  LP MEIAT    +   LG +FHT+
Sbjct:  491 YYTTDDKKALIAKVIASWIYSASTLHAAVNFPQKPSMSFVPSCPGSVYAPPPIDKRERTFDEFMNYLPPMEIATIHVAMLTLLGDIFHTK 580          
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: A0A6H5KD72_9PHAE (Lipoxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD72_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.800e-29
Identity = 57/87 (65.52%), Postives = 69/87 (79.31%), Query Frame = 1
Query:   10 SGDKKAFLAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDKNERTFEDYLACLPGMEIATTQAILGNTLGSVFHTR 270
            S D+K FLAKVLAS IY+AS LHAAVNFPQQ +MSF P+ P ++Y PPP DK ER+FE+YLA LP +EIA  Q + GN LG+VFHT+
Sbjct:  446 STDQKVFLAKVLASLIYSASVLHAAVNFPQQPIMSFVPSNPPSIYVPPPTDKTERSFEEYLAYLPPLEIAAEQVVTGNILGTVFHTK 532          
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: A0A6H5K920_9PHAE (Lipoxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K920_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.250e-27
Identity = 58/86 (67.44%), Postives = 67/86 (77.91%), Query Frame = 1
Query:   10 SGDKKAFLAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDKNERTFEDYLACLPGMEIATTQAILGNTLGSVFHT 267
            S DKK  LAKVLAS IY+ASTLHAAVNFPQ++ MSF P+ P ++Y  PP DK ERTFEDYLA LP +EIAT Q IL   LG+VF+T
Sbjct:  518 STDKKGLLAKVLASLIYSASTLHAAVNFPQKTTMSFAPSNPASVYVTPPTDKTERTFEDYLAYLPPLEIATRQVILFTFLGNVFYT 603          
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: A0A6H5JW78_9PHAE (Lipoxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW78_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.570e-26
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   37 KVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDKNERTFEDYLACLPGMEIATTQAILGNTLGSVFHTR 270
            KVLAS IY+AS LHAAVNFPQQ +MSF P+ P ++Y  PP DK +R+FE+YLA LP +EIA  Q + GN LG+VFHT+
Sbjct:   17 KVLASLIYSASVLHAAVNFPQQPIMSFVPSNPPSIYVQPPTDKTKRSFEEYLAYLPPLEIAAEQVVTGNILGTVFHTK 94          
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: A0A6H5JK40_9PHAE (Lipoxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK40_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 4.460e-21
Identity = 39/55 (70.91%), Postives = 50/55 (90.91%), Query Frame = 1
Query:    1 FHTSGDKKAFLAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDK 165
            ++T+ DKKAF+AKV+ASWIY+ASTLHAAVNFPQ+  MSF P+ PG++YAPPP+DK
Sbjct:   50 YYTTDDKKAFIAKVIASWIYSASTLHAAVNFPQKPSMSFVPSCPGSVYAPPPIDK 104          
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: A0A836C6W3_9STRA (Lipoxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6W3_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 8.030e-14
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   31 LAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDKNERTFEDYLACLPGMEIATTQAILGNTLGSVFHTR 270
            L K+LA+ I+T S  HAAVNFPQ S+M+FTP  P A++APPP D + +T  ++L  L  M +A  Q  +   LGSV+HTR
Sbjct:  559 LKKLLATIIFTGSAQHAAVNFPQPSIMAFTPAYPLALWAPPPDDPSPKTELEHLDMLAPMGVAKLQRSVALLLGSVYHTR 638          
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: A0A0N8KNK1_9CYAN (Lipoxygenase n=1 Tax=Phormidesmis priestleyi Ana TaxID=1666911 RepID=A0A0N8KNK1_9CYAN)

HSP 1 Score: 68.9 bits (167), Expect = 1.180e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   28 FLAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDKNERTFEDYLACLPGMEIATTQAILGNTLGSVFHTR 270
            +L   L   I+T+S  HAAVNFPQ +LM+++PN P A Y P P    + T +DYL  LP ++ A  Q  +   LGS+++TR
Sbjct:  595 YLTDALTLVIFTSSAQHAAVNFPQSALMTYSPNMPLAGYGPAPETATDATVQDYLNLLPPLDQAEVQMNMTYPLGSLYYTR 675          
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: A0A6H5JQS1_9PHAE (Lipoxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS1_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.890e-11
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:   31 LAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDKNERTF 180
            +++ LAS IY+ASTLHAAVNFPQ + +SF P+ P ++Y PPP DK   T+
Sbjct:    1 MSQALASLIYSASTLHAAVNFPQTTTISFAPSNPASVYVPPPTDKGVNTY 50          
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: A0A1Y5GPP4_9GAMM (Lipoxygenase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium 45_16_T64 TaxID=1856297 RepID=A0A1Y5GPP4_9GAMM)

HSP 1 Score: 67.0 bits (162), Expect = 5.580e-11
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   28 FLAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDKNERTFEDYLACLPGMEIATTQAILGNTLGSVFHTR 270
            +L  VL   ++TAS  HAAVNFPQ ++MS+TP    A YAP P  ++  + +D LA LP +E +  Q +L   LG V+ TR
Sbjct:  544 YLTDVLTMAVFTASAQHAAVNFPQLTVMSYTPAMQMASYAPLPTSEHCSSSQDILATLPPLEQSLKQMLLTQLLGGVYFTR 624          
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: B1WT74_CROS5 (Probable lipoxygenase n=2 Tax=Crocosphaera TaxID=263510 RepID=B1WT74_CROS5)

HSP 1 Score: 66.6 bits (161), Expect = 7.640e-11
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   16 DKKAFLAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDKNERTFEDYLACLPGMEIATTQAILGNTLGSVFHTR 270
            + K +L++VL++ I+TAS  HAAVNFPQ++LM++ P  P A Y+PPP    E   + +L  LP +  A +Q  +   LGSV++T+
Sbjct:  584 NTKDYLSQVLSTLIFTASAQHAAVNFPQKTLMTYVPGFPLARYSPPPTHVKET--QSFLDGLPSLSQAQSQINILYLLGSVYYTQ 666          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBX4_ECTSI7.960e-3060.00Lipoxygenase n=2 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5KD72_9PHAE1.800e-2965.52Lipoxygenase domain-containing protein n=2 Tax=Ect... [more]
A0A6H5K920_9PHAE1.250e-2767.44Lipoxygenase domain-containing protein n=2 Tax=Ect... [more]
A0A6H5JW78_9PHAE2.570e-2662.82Lipoxygenase domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JK40_9PHAE4.460e-2170.91Lipoxygenase domain-containing protein n=1 Tax=Ect... [more]
A0A836C6W3_9STRA8.030e-1450.00Lipoxygenase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A0N8KNK1_9CYAN1.180e-1143.21Lipoxygenase n=1 Tax=Phormidesmis priestleyi Ana T... [more]
A0A6H5JQS1_9PHAE2.890e-1156.00Lipoxygenase domain-containing protein n=1 Tax=Ect... [more]
A0A1Y5GPP4_9GAMM5.580e-1144.44Lipoxygenase domain-containing protein n=1 Tax=Gam... [more]
B1WT74_CROS57.640e-1142.35Probable lipoxygenase n=2 Tax=Crocosphaera TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17722contigH-elongata_contig17722:2065..2745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue2.3e-25
Seed eggNOG ortholog2880.D8LBX4
KEGG rclassRC00561,RC00839,RC02139
KEGG koko:K00461
KEGG ReactionR01595,R03058,R08527
KEGG Pathwayko00590,ko01100,ko04664,ko04726,ko04913,ko05145,map00590,map01100,map04664,map04726,map04913,map05145
EggNOG free text desc.oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
EggNOG OGs28IFU@1,2QQSP@2759
EC1.13.11.34
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Exons3
Model size271
Cds size270
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17722.4650.1prot_H-elongata_contig17722.4650.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17722 2065..2745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930025.2128499-CDS-H-elongata_contig17722:2064..21031622930025.2128499-CDS-H-elongata_contig17722:2064..2103Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17722 2065..2103 +
1691679251.2345994-CDS-H-elongata_contig17722:2064..21031691679251.2345994-CDS-H-elongata_contig17722:2064..2103Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17722 2065..2103 +
1622930025.2279828-CDS-H-elongata_contig17722:2306..24321622930025.2279828-CDS-H-elongata_contig17722:2306..2432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17722 2307..2432 +
1691679251.2491086-CDS-H-elongata_contig17722:2306..24321691679251.2491086-CDS-H-elongata_contig17722:2306..2432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17722 2307..2432 +
1622930025.2436132-CDS-H-elongata_contig17722:2640..27451622930025.2436132-CDS-H-elongata_contig17722:2640..2745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17722 2641..2745 +
1691679251.266507-CDS-H-elongata_contig17722:2640..27451691679251.266507-CDS-H-elongata_contig17722:2640..2745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17722 2641..2745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17722.4650.1

>prot_H-elongata_contig17722.4650.1 ID=prot_H-elongata_contig17722.4650.1|Name=mRNA_H-elongata_contig17722.4650.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
FHTSGDKKAFLAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAP
PPLDKNERTFEDYLACLPGMEIATTQAILGNTLGSVFHTR
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mRNA from alignment at H-elongata_contig17722:2065..2745+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17722.4650.1 ID=mRNA_H-elongata_contig17722.4650.1|Name=mRNA_H-elongata_contig17722.4650.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=681bp|location=Sequence derived from alignment at H-elongata_contig17722:2065..2745+ (Himanthalia elongata Himel1 dioecious)
TTCCACACGTCCGGGGACAAGAAAGCTTTTCTCGCTAAAGTAGGTTACTT ACGGCTGTTGACTATTGCCACAATGTTATCGCTGTAGGAAGATGCTCTGG ACATGTCGCCATTAACTCATAAATAATCTGTCGTGGGTACAGCTGAGAGG GTGAGTGCTACATTAGAGCCCTCGACTCACTCGTGTTCACACATCGCACG GCCAACCTCCGCCGGTTTAATTCGATTTGCTACGTTTCATAGGTGCTCGC TAGCTGGATCTACACGGCAAGCACGCTCCATGCCGCCGTCAACTTCCCAC AACAATCCCTAATGTCATTCACACCGAACACACCCGGGGCTATGTACGCC CCTCCTCCCCTCGACAAGGTACAAATACATACGGGGATGGCGTTTCAAAG CATTTTATGACTTGTATGTTTCACGATATACTACGAACATGTTTCTTTTA TTCAAACCATAACTCTGATAGCTTCACAATTCAGCGTATAGTTGTGATAA TTTGAGTTACATGCAGCTATATGAGGTCGAATATTGATTTAAACCACTGC CGCATCGTATTGTGGTCCTCATACAGAACGAAAGGACGTTCGAAGACTAC CTGGCTTGCCTCCCGGGCATGGAAATAGCCACGACACAGGCTATCCTCGG GAATACCCTCGGCTCTGTATTCCATACAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig17722:2065..2745+

>mRNA_H-elongata_contig17722.4650.1 ID=mRNA_H-elongata_contig17722.4650.1|Name=mRNA_H-elongata_contig17722.4650.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig17722:2065..2745+ (Himanthalia elongata Himel1 dioecious)
TTCCACACGTCCGGGGACAAGAAAGCTTTTCTCGCTAAATTCCACACGTC
CGGGGACAAGAAAGCTTTTCTCGCTAAAGTGCTCGCTAGCTGGATCTACA
CGGCAAGCACGCTCCATGCCGCCGTCAACTTCCCACAACAATCCCTAATG
TCATTCACACCGAACACACCCGGGGCTATGTACGCCCCTCCTCCCCTCGA
CAAGGTGCTCGCTAGCTGGATCTACACGGCAAGCACGCTCCATGCCGCCG
TCAACTTCCCACAACAATCCCTAATGTCATTCACACCGAACACACCCGGG
GCTATGTACGCCCCTCCTCCCCTCGACAAGAACGAAAGGACGTTCGAAGA
CTACCTGGCTTGCCTCCCGGGCATGGAAATAGCCACGACACAGGCTATCC
TCGGGAATACCCTCGGCTCTGTATTCCATACAAGGAACGAAAGGACGTTC
GAAGACTACCTGGCTTGCCTCCCGGGCATGGAAATAGCCACGACACAGGC
TATCCTCGGGAATACCCTCGGCTCTGTATTCCATACAAGG
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