mRNA_H-elongata_contig17712.4646.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17712.4646.1
Unique NamemRNA_H-elongata_contig17712.4646.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17712.4646.1 vs. uniprot
Match: A0A6H5JYH2_9PHAE (RanBD1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH2_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 7.100e-15
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 VELMDPSEVVNGEESEKCTHRTRAKLFRLVDKEWVEMGIGYMKVRR 138
            +ELMDPSEV+NGEE E+CTH+ R KLFRLV+KEW EMGIG +KV R
Sbjct:  397 LELMDPSEVINGEELEECTHKARGKLFRLVNKEWAEMGIGNLKVLR 442
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BLAST of mRNA_H-elongata_contig17712.4646.1 vs. uniprot
Match: A0A7I8W0M8_9ANNE (DgyrCDS9914 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W0M8_9ANNE)

HSP 1 Score: 53.9 bits (128), Expect = 5.350e-7
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   10 MDPSEVVNGEESEKCTHRTRAKLFRLVDKEWVEMGIGYMKV 132
            +DP E+V GEE+EK  +++RAKL+R VD EW E GIG +K+
Sbjct:  862 LDPVEIVTGEENEKVLYKSRAKLYRFVDGEWKERGIGDVKI 902
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BLAST of mRNA_H-elongata_contig17712.4646.1 vs. uniprot
Match: UPI0005F4E61E (E3 SUMO-protein ligase RanBP2-like n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F4E61E)

HSP 1 Score: 50.8 bits (120), Expect = 6.580e-6
Identity = 25/49 (51.02%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    1 VELMDPSEVVNGEESEKCTHRTRAKLFRLVDKEWVEMGIGYMKVRRRGE 147
            + L D  EV  GEE+E   +  RAKLFR VDKEW E G+G +K+ R  E
Sbjct: 1265 IPLPDKVEVTTGEENEHTLYCGRAKLFRFVDKEWKERGVGDVKLLRNAE 1313
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BLAST of mRNA_H-elongata_contig17712.4646.1 vs. uniprot
Match: UPI0006262143 (E3 SUMO-protein ligase RanBP2 isoform X1 n=4 Tax=Athalia rosae TaxID=37344 RepID=UPI0006262143)

HSP 1 Score: 50.8 bits (120), Expect = 6.580e-6
Identity = 24/49 (48.98%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:    1 VELMDPSEVVNGEESEKCTHRTRAKLFRLVDKEWVEMGIGYMKVRRRGE 147
            V L    E+  GEE E   +  +AKLFR VDKEW E G+GY+K+ R  E
Sbjct: 1206 VPLPAEIEITTGEEGETMLYCAKAKLFRFVDKEWKERGVGYVKLLRNSE 1254
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BLAST of mRNA_H-elongata_contig17712.4646.1 vs. uniprot
Match: UPI000622FEED (RANBP2-like and GRIP domain-containing protein 5/6 n=1 Tax=Linepithema humile TaxID=83485 RepID=UPI000622FEED)

HSP 1 Score: 50.1 bits (118), Expect = 1.230e-5
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:   25 VVNGEESEKCTHRTRAKLFRLVDKEWVEMGIGYMKVRRRGE 147
            V+ GEE E   +  RAKLFR VDKEW E G+GY+K+ R  E
Sbjct: 1289 VLTGEEDEDSLYCGRAKLFRFVDKEWKERGVGYVKLLRNAE 1329
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BLAST of mRNA_H-elongata_contig17712.4646.1 vs. uniprot
Match: D6WHS2_TRICA (Uncharacterized protein n=2 Tax=Tribolium TaxID=7069 RepID=D6WHS2_TRICA)

HSP 1 Score: 50.1 bits (118), Expect = 1.230e-5
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:    1 VELMDPSEVVNGEESEKCTHRTRAKLFRLVDKEWVEMGIGYMKVRRR 141
            + L D  EV  GEE E   +  RAKL+R VDKEW E GIG +K+ RR
Sbjct: 1911 IPLPDKVEVKTGEEEEDVLYCHRAKLYRFVDKEWKERGIGDLKILRR 1957
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BLAST of mRNA_H-elongata_contig17712.4646.1 vs. uniprot
Match: UPI0013F23360 (E3 SUMO-protein ligase RanBP2 isoform X1 n=2 Tax=Odontomachus brunneus TaxID=486640 RepID=UPI0013F23360)

HSP 1 Score: 50.1 bits (118), Expect = 1.230e-5
Identity = 25/41 (60.98%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:   25 VVNGEESEKCTHRTRAKLFRLVDKEWVEMGIGYMKVRRRGE 147
            V  GEE E   +  RAKLFR VDKEW E GIGYMK+ R  E
Sbjct: 1266 VTTGEEDEVTLYCGRAKLFRFVDKEWKERGIGYMKLLRNVE 1306
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BLAST of mRNA_H-elongata_contig17712.4646.1 vs. uniprot
Match: UPI000994ECEA (E3 SUMO-protein ligase RanBP2-like isoform X1 n=4 Tax=Pseudomyrmex gracilis TaxID=219809 RepID=UPI000994ECEA)

HSP 1 Score: 49.7 bits (117), Expect = 1.690e-5
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:   25 VVNGEESEKCTHRTRAKLFRLVDKEWVEMGIGYMKVRRRGE 147
            V  GEE E   + +RAKLFR VDKEW E G+GY+K+ R  E
Sbjct: 1330 VFTGEEDEDTLYCSRAKLFRFVDKEWKERGVGYVKLLRNTE 1370
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BLAST of mRNA_H-elongata_contig17712.4646.1 vs. uniprot
Match: UPI0018CCAFA5 (E3 SUMO-protein ligase RanBP2-like n=1 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CCAFA5)

HSP 1 Score: 49.3 bits (116), Expect = 2.310e-5
Identity = 24/46 (52.17%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:    1 VELMDPSEVVNGEESEKCTHRTRAKLFRLVDKEWVEMGIGYMKVRR 138
            + L D  +VV GEE E   +  RAKLFR VD EW E GIG +K+ R
Sbjct: 2067 IPLPDKVDVVTGEEEEDVLYEHRAKLFRFVDSEWKERGIGDVKILR 2112
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BLAST of mRNA_H-elongata_contig17712.4646.1 vs. uniprot
Match: E2ARH2_CAMFO (E3 SUMO-protein ligase RanBP2 n=1 Tax=Camponotus floridanus TaxID=104421 RepID=E2ARH2_CAMFO)

HSP 1 Score: 49.3 bits (116), Expect = 2.310e-5
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:   25 VVNGEESEKCTHRTRAKLFRLVDKEWVEMGIGYMKVRRRGE 147
            V  GEE E   + +RAKLFR VDKEW E G+GY+K+ R  E
Sbjct: 1299 VTTGEEDEDTLYCSRAKLFRFVDKEWKERGVGYVKLLRNLE 1339
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17712.4646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYH2_9PHAE7.100e-1573.91RanBD1 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7I8W0M8_9ANNE5.350e-756.10DgyrCDS9914 n=1 Tax=Dimorphilus gyrociliatus TaxID... [more]
UPI0005F4E61E6.580e-651.02E3 SUMO-protein ligase RanBP2-like n=1 Tax=Vollenh... [more]
UPI00062621436.580e-648.98E3 SUMO-protein ligase RanBP2 isoform X1 n=4 Tax=A... [more]
UPI000622FEED1.230e-556.10RANBP2-like and GRIP domain-containing protein 5/6... [more]
D6WHS2_TRICA1.230e-553.19Uncharacterized protein n=2 Tax=Tribolium TaxID=70... [more]
UPI0013F233601.230e-560.98E3 SUMO-protein ligase RanBP2 isoform X1 n=2 Tax=O... [more]
UPI000994ECEA1.690e-556.10E3 SUMO-protein ligase RanBP2-like isoform X1 n=4 ... [more]
UPI0018CCAFA52.310e-552.17E3 SUMO-protein ligase RanBP2-like n=1 Tax=Teleops... [more]
E2ARH2_CAMFO2.310e-556.10E3 SUMO-protein ligase RanBP2 n=1 Tax=Camponotus f... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17712contigH-elongata_contig17712:6188..6349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionRan binding domain
Ec32 orthologEc-19_003750.1
Exons1
Model size162
Cds size153
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930024.6416755-UTR-H-elongata_contig17712:6187..61961622930024.6416755-UTR-H-elongata_contig17712:6187..6196Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17712 6188..6196 +
1691679251.0073335-UTR-H-elongata_contig17712:6187..61961691679251.0073335-UTR-H-elongata_contig17712:6187..6196Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17712 6188..6196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930024.6547074-CDS-H-elongata_contig17712:6196..63491622930024.6547074-CDS-H-elongata_contig17712:6196..6349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17712 6197..6349 +
1691679251.0165107-CDS-H-elongata_contig17712:6196..63491691679251.0165107-CDS-H-elongata_contig17712:6196..6349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17712 6197..6349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17712.4646.1prot_H-elongata_contig17712.4646.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17712 6197..6349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17712.4646.1

>prot_H-elongata_contig17712.4646.1 ID=prot_H-elongata_contig17712.4646.1|Name=mRNA_H-elongata_contig17712.4646.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MDPSEVVNGEESEKCTHRTRAKLFRLVDKEWVEMGIGYMKVRRRGERVVP
*
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mRNA from alignment at H-elongata_contig17712:6188..6349+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17712.4646.1 ID=mRNA_H-elongata_contig17712.4646.1|Name=mRNA_H-elongata_contig17712.4646.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig17712:6188..6349+ (Himanthalia elongata Himel1 dioecious)
GTGGAGCTGATGGACCCCTCCGAGGTCGTGAACGGGGAAGAGTCGGAGAA
GTGCACCCACAGGACCAGAGCCAAGCTATTTCGGCTAGTCGACAAGGAGT
GGGTGGAGATGGGGATCGGTTACATGAAGGTTAGGAGGAGGGGGGAGAGG
GTTGTTCCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig17712:6188..6349+

>mRNA_H-elongata_contig17712.4646.1 ID=mRNA_H-elongata_contig17712.4646.1|Name=mRNA_H-elongata_contig17712.4646.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig17712:6188..6349+ (Himanthalia elongata Himel1 dioecious)
ATGGACCCCTCCGAGGTCGTGAACGGGGAAGAGTCGGAGAAGTGCACCCA
CAGGACCAGAGCCAAGCTATTTCGGCTAGTCGACAAGGAGTGGGTGGAGA
TGGGGATCGGTTACATGAAGGTTAGGAGGAGGGGGGAGAGGGTTGTTCCA
TAAATGGACCCCTCCGAGGTCGTGAACGGGGAAGAGTCGGAGAAGTGCAC
CCACAGGACCAGAGCCAAGCTATTTCGGCTAGTCGACAAGGAGTGGGTGG
AGATGGGGATCGGTTACATGAAGGTTAGGAGGAGGGGGGAGAGGGTTGTT
CCATAA
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