mRNA_H-elongata_contig177042.4644.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177042.4644.1
Unique NamemRNA_H-elongata_contig177042.4644.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig177042.4644.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.360e-11
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:    1 PHLGLLARLHLGIDATSTQPERNFSALSALLSDRRSRLSPKKFKMMMLLKLNRHLIPGFKDVLGDVVDLKAGNVSL 228
            P+L  +ARL+LGI+ATS Q ERNFSAL+ L+   R  + P K + MM ++LNRHL+   +++   VV  KA    +
Sbjct:  556 PYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAKTKV 631
[Close]
BLAST of mRNA_H-elongata_contig177042.4644.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.380e-11
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:    1 PHLGLLARLHLGIDATSTQPERNFSALSALLSDRRSRLSPKKFKMMMLLKLNRHLIPGFKDVLGDVVDLKAGNVSL 228
            P+L  +ARL+LGI+ATS Q ERNFSAL+ L+   R  + P K + MM ++LNRHL+   +++   VV  KA    +
Sbjct:  751 PYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAKTKV 826
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BLAST of mRNA_H-elongata_contig177042.4644.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 6.300e-11
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    1 PHLGLLARLHLGIDATSTQPERNFSALSALLSDRRSRLSPKKFKMMMLLKLNRHLIPGFKDVLGDVVDLKA 213
            P+L  +ARL+LGI+ATS Q ERNFSA S L+   R ++ P KF+  M ++LNRHL+   +++   V   KA
Sbjct:  345 PYLAFIARLYLGIEATSCQAERNFSARSHLIGQLRCKILPSKFERTMFIRLNRHLVAEVRELDAAVAQAKA 415
[Close]
BLAST of mRNA_H-elongata_contig177042.4644.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.060e-10
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    1 PHLGLLARLHLGIDATSTQPERNFSALSALLSDRRSRLSPKKFKMMMLLKLNRHLIPGFKDVLGDVVDLKA 213
            P+L  +ARLHLGI+ATS Q ERNFSAL+ L+   R  +  +K + MML++LNRHL+   + +   V   +A
Sbjct:  434 PYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLNRHLLAEVRALDAAVAQARA 504
[Close]
BLAST of mRNA_H-elongata_contig177042.4644.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.730e-9
Identity = 29/56 (51.79%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 PHLGLLARLHLGIDATSTQPERNFSALSALLSDRRSRLSPKKFKMMMLLKLNRHLI 168
            P+L  +ARLHLGI+ATS Q ERNFSAL+ L+ + R  + P + + MML++LNR ++
Sbjct:  448 PYLAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLNRRML 503
[Close]
BLAST of mRNA_H-elongata_contig177042.4644.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.450e-9
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 PHLGLLARLHLGIDATSTQPERNFSALSALLSDRRSRLSPKKFKMMMLLKLNRHLIPGFKDV 186
            P+L  +ARL LGI+A+S Q ERNFSALS L+   R  +  +K + MML++LNRHL+   +++
Sbjct:  174 PYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVREL 235
[Close]
BLAST of mRNA_H-elongata_contig177042.4644.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 5.080e-9
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    1 PHLGLLARLHLGIDATSTQPERNFSALSALLSDRRSRLSPKKFKMMMLLKLNRHLIPGFKDVLGDVVD 204
            PHL L+ARL  GI++TS Q ERNFSAL+ L+   RS + P K + +M L+LNR  IP  K  L D V+
Sbjct:  412 PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVK-ALHDAVE 478
[Close]
BLAST of mRNA_H-elongata_contig177042.4644.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 5.190e-9
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 PHLGLLARLHLGIDATSTQPERNFSALSALLSDRRSRLSPKKFKMMMLLKLNRHLIPGFKDV 186
            P+L  +ARL LGI+A+S Q ERNFSALS L+   R  +  +K + MML++LNRHL+   +++
Sbjct:  739 PYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVREL 800
[Close]
BLAST of mRNA_H-elongata_contig177042.4644.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 5.190e-9
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    1 PHLGLLARLHLGIDATSTQPERNFSALSALLSDRRSRLSPKKFKMMMLLKLNRHLIPGFKDVLGDVVD 204
            PHL L+ARL  GI++TS Q ERNFSAL+ L+   RS + P K + +M L+LNR  IP  K  L D V+
Sbjct:  740 PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVK-ALHDAVE 806
[Close]
BLAST of mRNA_H-elongata_contig177042.4644.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.310e-8
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 PHLGLLARLHLGIDATSTQPERNFSALSALLSDRRSRLSPKKFKMMMLLKLNRHLI 168
            P+L  +ARLHLGI+ATS Q ERNFSAL+ L+ D    +   + + MML++LN+HL+
Sbjct:  552 PYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLNKHLL 607
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177042.4644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JTB8_9PHAE1.360e-1144.74Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE1.380e-1144.74Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KAS2_9PHAE6.300e-1146.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE3.060e-1046.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE2.730e-951.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJT6_9PHAE3.450e-948.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE5.080e-951.47Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JRT6_9PHAE5.190e-948.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ52_9PHAE5.190e-951.47Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JQI6_9PHAE1.310e-851.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177042contigH-elongata_contig177042:913..1146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930024.5525894-CDS-H-elongata_contig177042:912..11461622930024.5525894-CDS-H-elongata_contig177042:912..1146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177042 913..1146 -
1691679250.974907-CDS-H-elongata_contig177042:912..11461691679250.974907-CDS-H-elongata_contig177042:912..1146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177042 913..1146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177042.4644.1prot_H-elongata_contig177042.4644.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177042 913..1146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177042.4644.1

>prot_H-elongata_contig177042.4644.1 ID=prot_H-elongata_contig177042.4644.1|Name=mRNA_H-elongata_contig177042.4644.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
PHLGLLARLHLGIDATSTQPERNFSALSALLSDRRSRLSPKKFKMMMLLK
LNRHLIPGFKDVLGDVVDLKAGNVSLE*
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mRNA from alignment at H-elongata_contig177042:913..1146-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177042.4644.1 ID=mRNA_H-elongata_contig177042.4644.1|Name=mRNA_H-elongata_contig177042.4644.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig177042:913..1146- (Himanthalia elongata Himel1 dioecious)
CCGCACCTTGGACTGTTGGCCAGACTGCACCTGGGCATAGATGCTACCAG
CACTCAACCTGAACGGAACTTCTCCGCTCTTTCCGCTCTCCTTAGCGACC
GACGCAGTCGCCTTTCACCCAAGAAGTTCAAAATGATGATGCTGCTCAAG
CTCAACCGGCACCTGATCCCGGGGTTCAAAGATGTTCTCGGTGATGTAGT
GGACCTAAAAGCTGGCAACGTATCTCTTGAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig177042:913..1146-

>mRNA_H-elongata_contig177042.4644.1 ID=mRNA_H-elongata_contig177042.4644.1|Name=mRNA_H-elongata_contig177042.4644.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig177042:913..1146- (Himanthalia elongata Himel1 dioecious)
CCGCACCTTGGACTGTTGGCCAGACTGCACCTGGGCATAGATGCTACCAG
CACTCAACCTGAACGGAACTTCTCCGCTCTTTCCGCTCTCCTTAGCGACC
GACGCAGTCGCCTTTCACCCAAGAAGTTCAAAATGATGATGCTGCTCAAG
CTCAACCGGCACCTGATCCCGGGGTTCAAAGATGTTCTCGGTGATGTAGT
GGACCTAAAAGCTGGCAACGTATCTCTTGAATAGCCGCACCTTGGACTGT
TGGCCAGACTGCACCTGGGCATAGATGCTACCAGCACTCAACCTGAACGG
AACTTCTCCGCTCTTTCCGCTCTCCTTAGCGACCGACGCAGTCGCCTTTC
ACCCAAGAAGTTCAAAATGATGATGCTGCTCAAGCTCAACCGGCACCTGA
TCCCGGGGTTCAAAGATGTTCTCGGTGATGTAGTGGACCTAAAAGCTGGC
AACGTATCTCTTGAATAG
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