mRNA_H-elongata_contig17680.4635.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17680.4635.1
Unique NamemRNA_H-elongata_contig17680.4635.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig17680.4635.1 vs. uniprot
Match: A0A7S2S457_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S457_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.380e-8
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 1 
Query:    1 VRYRPEKDEFSGLSSAYTSFTYTAIDGVTGDQSAAAGIVKIYVLPMNDPPIPVNMSATVFAGKAYTLFLAGLEVDSSDGDYIVGAFLYELPAYGALYE 294
            +RYRP KD  SGL  A  +F+Y A+DGVTG +SA    V + V P NDPP   N+S   F+    T+     +VD S    I  A++  LP  G L +
Sbjct:   43 LRYRPPKDA-SGL--ALDTFSYYAMDGVTGVRSAQTRTVTLDVRPCNDPPRAFNVSLWAFSSTRTTVEFNTSDVDDSA---IAAAYITRLPRNGVLLQ 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17680.4635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2S457_9STRA1.380e-840.82Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17680contigH-elongata_contig17680:4432..4749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConserved hypothetical protein
Ec32 orthologEc-sdr_f_000170.1
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930023.2104065-CDS-H-elongata_contig17680:4431..47491622930023.2104065-CDS-H-elongata_contig17680:4431..4749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17680 4432..4749 +
1691679250.2400036-CDS-H-elongata_contig17680:4431..47491691679250.2400036-CDS-H-elongata_contig17680:4431..4749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17680 4432..4749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17680.4635.1prot_H-elongata_contig17680.4635.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17680 4432..4749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17680.4635.1

>prot_H-elongata_contig17680.4635.1 ID=prot_H-elongata_contig17680.4635.1|Name=mRNA_H-elongata_contig17680.4635.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
VRYRPEKDEFSGLSSAYTSFTYTAIDGVTGDQSAAAGIVKIYVLPMNDPP
IPVNMSATVFAGKAYTLFLAGLEVDSSDGDYIVGAFLYELPAYGALYEVR
FISEI*
back to top

mRNA from alignment at H-elongata_contig17680:4432..4749+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17680.4635.1 ID=mRNA_H-elongata_contig17680.4635.1|Name=mRNA_H-elongata_contig17680.4635.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig17680:4432..4749+ (Himanthalia elongata Himel1 dioecious)
GTGAGATATCGCCCTGAGAAGGACGAATTCTCTGGACTTAGTAGTGCATA
TACGTCGTTCACGTATACGGCTATAGATGGTGTAACCGGCGATCAAAGCG
CTGCTGCTGGGATTGTTAAAATATATGTTCTACCAATGAATGATCCCCCG
ATTCCTGTCAACATGTCCGCCACGGTCTTCGCCGGGAAAGCCTACACGTT
GTTTTTAGCCGGTCTAGAGGTGGACAGCTCGGATGGCGATTACATCGTTG
GAGCATTCCTTTACGAGCTACCAGCCTACGGGGCGCTTTACGAGGTGCGT
TTTATCAGCGAGATTTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig17680:4432..4749+

>mRNA_H-elongata_contig17680.4635.1 ID=mRNA_H-elongata_contig17680.4635.1|Name=mRNA_H-elongata_contig17680.4635.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig17680:4432..4749+ (Himanthalia elongata Himel1 dioecious)
GTGAGATATCGCCCTGAGAAGGACGAATTCTCTGGACTTAGTAGTGCATA
TACGTCGTTCACGTATACGGCTATAGATGGTGTAACCGGCGATCAAAGCG
CTGCTGCTGGGATTGTTAAAATATATGTTCTACCAATGAATGATCCCCCG
ATTCCTGTCAACATGTCCGCCACGGTCTTCGCCGGGAAAGCCTACACGTT
GTTTTTAGCCGGTCTAGAGGTGGACAGCTCGGATGGCGATTACATCGTTG
GAGCATTCCTTTACGAGCTACCAGCCTACGGGGCGCTTTACGAGGTGCGT
TTTATCAGCGAGATTTAAGTGAGATATCGCCCTGAGAAGGACGAATTCTC
TGGACTTAGTAGTGCATATACGTCGTTCACGTATACGGCTATAGATGGTG
TAACCGGCGATCAAAGCGCTGCTGCTGGGATTGTTAAAATATATGTTCTA
CCAATGAATGATCCCCCGATTCCTGTCAACATGTCCGCCACGGTCTTCGC
CGGGAAAGCCTACACGTTGTTTTTAGCCGGTCTAGAGGTGGACAGCTCGG
ATGGCGATTACATCGTTGGAGCATTCCTTTACGAGCTACCAGCCTACGGG
GCGCTTTACGAGGTGCGTTTTATCAGCGAGATTTAA
back to top